A citation-based method for searching scientific literature

Nicholas James Sofroniew, Daniel Flickinger, Jonathan King, Karel Svoboda. Elife 2016
Times Cited: 203







List of co-cited articles
1073 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
43

Wide field-of-view, multi-region, two-photon imaging of neuronal activity in the mammalian brain.
Jeffrey N Stirman, Ikuko T Smith, Michael W Kudenov, Spencer L Smith. Nat Biotechnol 2016
116
38

Fully integrated silicon probes for high-density recording of neural activity.
James J Jun, Nicholas A Steinmetz, Joshua H Siegle, Daniel J Denman, Marius Bauza, Brian Barbarits, Albert K Lee, Costas A Anastassiou, Alexandru Andrei, Çağatay Aydın,[...]. Nature 2017
451
25

Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data.
Eftychios A Pnevmatikakis, Daniel Soudry, Yuanjun Gao, Timothy A Machado, Josh Merel, David Pfau, Thomas Reardon, Yu Mu, Clay Lacefield, Weijian Yang,[...]. Neuron 2016
298
18

Spontaneous behaviors drive multidimensional, brainwide activity.
Carsen Stringer, Marius Pachitariu, Nicholas Steinmetz, Charu Bai Reddy, Matteo Carandini, Kenneth D Harris. Science 2019
204
18

Sensitive red protein calcium indicators for imaging neural activity.
Hod Dana, Boaz Mohar, Yi Sun, Sujatha Narayan, Andrew Gordus, Jeremy P Hasseman, Getahun Tsegaye, Graham T Holt, Amy Hu, Deepika Walpita,[...]. Elife 2016
352
17

A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality.
Tanya L Daigle, Linda Madisen, Travis A Hage, Matthew T Valley, Ulf Knoblich, Rylan S Larsen, Marc M Takeno, Lawrence Huang, Hong Gu, Rachael Larsen,[...]. Cell 2018
160
17

Two-photon laser scanning fluorescence microscopy.
W Denk, J H Strickler, W W Webb. Science 1990
17

Long-Term Optical Access to an Estimated One Million Neurons in the Live Mouse Cortex.
Tony Hyun Kim, Yanping Zhang, Jérôme Lecoq, Juergen C Jung, Jane Li, Hongkui Zeng, Cristopher M Niell, Mark J Schnitzer. Cell Rep 2016
86
18

Miniaturized integration of a fluorescence microscope.
Kunal K Ghosh, Laurie D Burns, Eric D Cocker, Axel Nimmerjahn, Yaniv Ziv, Abbas El Gamal, Mark J Schnitzer. Nat Methods 2011
432
16

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.
Hod Dana, Yi Sun, Boaz Mohar, Brad K Hulse, Aaron M Kerlin, Jeremy P Hasseman, Getahun Tsegaye, Arthur Tsang, Allan Wong, Ronak Patel,[...]. Nat Methods 2019
178
16

In vivo imaging of neural activity.
Weijian Yang, Rafael Yuste. Nat Methods 2017
146
15

Genetically encoded indicators of neuronal activity.
Michael Z Lin, Mark J Schnitzer. Nat Neurosci 2016
258
14

In vivo three-photon imaging of activity of GCaMP6-labeled neurons deep in intact mouse brain.
Dimitre G Ouzounov, Tianyu Wang, Mengran Wang, Danielle D Feng, Nicholas G Horton, Jean C Cruz-Hernández, Yu-Ting Cheng, Jacob Reimer, Andreas S Tolias, Nozomi Nishimura,[...]. Nat Methods 2017
171
14

Deep tissue two-photon microscopy.
Fritjof Helmchen, Winfried Denk. Nat Methods 2005
14

Ultra-large field-of-view two-photon microscopy.
Philbert S Tsai, Celine Mateo, Jeffrey J Field, Chris B Schaffer, Matthew E Anderson, David Kleinfeld. Opt Express 2015
44
31

Simultaneous all-optical manipulation and recording of neural circuit activity with cellular resolution in vivo.
Adam M Packer, Lloyd E Russell, Henry W P Dalgleish, Michael Häusser. Nat Methods 2015
246
13

Long-term, high-resolution imaging in the mouse neocortex through a chronic cranial window.
Anthony Holtmaat, Tobias Bonhoeffer, David K Chow, Jyoti Chuckowree, Vincenzo De Paola, Sonja B Hofer, Mark Hübener, Tara Keck, Graham Knott, Wei-Chung A Lee,[...]. Nat Protoc 2009
530
13

Thy1-GCaMP6 transgenic mice for neuronal population imaging in vivo.
Hod Dana, Tsai-Wen Chen, Amy Hu, Brenda C Shields, Caiying Guo, Loren L Looger, Douglas S Kim, Karel Svoboda. PLoS One 2014
204
13

Fast two-photon in vivo imaging with three-dimensional random-access scanning in large tissue volumes.
Gergely Katona, Gergely Szalay, Pál Maák, Attila Kaszás, Máté Veress, Dániel Hillier, Balázs Chiovini, E Sylvester Vizi, Botond Roska, Balázs Rózsa. Nat Methods 2012
193
13

High-speed volumetric imaging of neuronal activity in freely moving rodents.
Oliver Skocek, Tobias Nöbauer, Lukas Weilguny, Francisca Martínez Traub, Chuying Naomi Xia, Maxim I Molodtsov, Abhinav Grama, Masahito Yamagata, Daniel Aharoni, David D Cox,[...]. Nat Methods 2018
45
28

Single-trial neural dynamics are dominated by richly varied movements.
Simon Musall, Matthew T Kaufman, Ashley L Juavinett, Steven Gluf, Anne K Churchland. Nat Neurosci 2019
132
13

Fast high-resolution miniature two-photon microscopy for brain imaging in freely behaving mice.
Weijian Zong, Runlong Wu, Mingli Li, Yanhui Hu, Yijun Li, Jinghang Li, Hao Rong, Haitao Wu, Yangyang Xu, Yang Lu,[...]. Nat Methods 2017
132
12

Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance.
Linda Madisen, Aleena R Garner, Daisuke Shimaoka, Amy S Chuong, Nathan C Klapoetke, Lu Li, Alexander van der Bourg, Yusuke Niino, Ladan Egolf, Claudio Monetti,[...]. Neuron 2015
457
12

Ultrafast neuronal imaging of dopamine dynamics with designed genetically encoded sensors.
Tommaso Patriarchi, Jounhong Ryan Cho, Katharina Merten, Mark W Howe, Aaron Marley, Wei-Hong Xiong, Robert W Folk, Gerard Joey Broussard, Ruqiang Liang, Min Jee Jang,[...]. Science 2018
244
12

Volumetric Ca2+ Imaging in the Mouse Brain Using Hybrid Multiplexed Sculpted Light Microscopy.
Siegfried Weisenburger, Frank Tejera, Jeffrey Demas, Brandon Chen, Jason Manley, Fraser T Sparks, Francisca Martínez Traub, Tanya Daigle, Hongkui Zeng, Attila Losonczy,[...]. Cell 2019
43
27

Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.
Ahmed S Abdelfattah, Takashi Kawashima, Amrita Singh, Ondrej Novak, Hui Liu, Yichun Shuai, Yi-Chieh Huang, Luke Campagnola, Stephanie C Seeman, Jianing Yu,[...]. Science 2019
112
12

A mesoscale connectome of the mouse brain.
Seung Wook Oh, Julie A Harris, Lydia Ng, Brent Winslow, Nicholas Cain, Stefan Mihalas, Quanxin Wang, Chris Lau, Leonard Kuan, Alex M Henry,[...]. Nature 2014
988
11

Visualizing mammalian brain area interactions by dual-axis two-photon calcium imaging.
Jérôme Lecoq, Joan Savall, Dejan Vučinić, Benjamin F Grewe, Hyun Kim, Jin Zhong Li, Lacey J Kitch, Mark J Schnitzer. Nat Neurosci 2014
73
15

In vivo three-photon microscopy of subcortical structures within an intact mouse brain.
Nicholas G Horton, Ke Wang, Demirhan Kobat, Catharine G Clark, Frank W Wise, Chris B Schaffer, Chris Xu. Nat Photonics 2013
482
11

Global Representations of Goal-Directed Behavior in Distinct Cell Types of Mouse Neocortex.
William E Allen, Isaac V Kauvar, Michael Z Chen, Ethan B Richman, Samuel J Yang, Ken Chan, Viviana Gradinaru, Benjamin E Deverman, Liqun Luo, Karl Deisseroth. Neuron 2017
120
11

NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data.
Eftychios A Pnevmatikakis, Andrea Giovannucci. J Neurosci Methods 2017
141
10

High-speed, miniaturized fluorescence microscopy in freely moving mice.
Benjamin A Flusberg, Axel Nimmerjahn, Eric D Cocker, Eran A Mukamel, Robert P J Barretto, Tony H Ko, Laurie D Burns, Juergen C Jung, Mark J Schnitzer. Nat Methods 2008
212
10

Simultaneous two-photon calcium imaging at different depths with spatiotemporal multiplexing.
Adrian Cheng, J Tiago Gonçalves, Peyman Golshani, Katsushi Arisaka, Carlos Portera-Cailliau. Nat Methods 2011
139
10

Long-range population dynamics of anatomically defined neocortical networks.
Jerry L Chen, Fabian F Voigt, Mitra Javadzadeh, Roland Krueppel, Fritjof Helmchen. Elife 2016
52
19

A genetically encoded fluorescent acetylcholine indicator for in vitro and in vivo studies.
Miao Jing, Peng Zhang, Guangfu Wang, Jiesi Feng, Lukas Mesik, Jianzhi Zeng, Huoqing Jiang, Shaohua Wang, Jess C Looby, Nick A Guagliardo,[...]. Nat Biotechnol 2018
110
10

Imaging calcium in neurons.
Christine Grienberger, Arthur Konnerth. Neuron 2012
554
10

Distributed coding of choice, action and engagement across the mouse brain.
Nicholas A Steinmetz, Peter Zatka-Haas, Matteo Carandini, Kenneth D Harris. Nature 2019
98
10

Aberrant Cortical Activity in Multiple GCaMP6-Expressing Transgenic Mouse Lines.
Nicholas A Steinmetz, Christina Buetfering, Jerome Lecoq, Christian R Lee, Andrew J Peters, Elina A K Jacobs, Philip Coen, Douglas R Ollerenshaw, Matthew T Valley, Saskia E J de Vries,[...]. eNeuro 2017
86
10

All-Optical Interrogation of Neural Circuits.
Valentina Emiliani, Adam E Cohen, Karl Deisseroth, Michael Häusser. J Neurosci 2015
145
9

A shared neural ensemble links distinct contextual memories encoded close in time.
Denise J Cai, Daniel Aharoni, Tristan Shuman, Justin Shobe, Jeremy Biane, Weilin Song, Brandon Wei, Michael Veshkini, Mimi La-Vu, Jerry Lou,[...]. Nature 2016
308
9

Chronic optical access through a polished and reinforced thinned skull.
Patrick J Drew, Andy Y Shih, Jonathan D Driscoll, Per Magne Knutsen, Pablo Blinder, Dimitrios Davalos, Katerina Akassoglou, Philbert S Tsai, David Kleinfeld. Nat Methods 2010
231
9

Millisecond-timescale, genetically targeted optical control of neural activity.
Edward S Boyden, Feng Zhang, Ernst Bamberg, Georg Nagel, Karl Deisseroth. Nat Neurosci 2005
9

Simultaneous Multi-plane Imaging of Neural Circuits.
Weijian Yang, Jae-Eun Kang Miller, Luis Carrillo-Reid, Eftychios Pnevmatikakis, Liam Paninski, Rafael Yuste, Darcy S Peterka. Neuron 2016
101
9

Fast two-layer two-photon imaging of neuronal cell populations using an electrically tunable lens.
Benjamin F Grewe, Fabian F Voigt, Marcel van 't Hoff, Fritjof Helmchen. Biomed Opt Express 2011
140
9

Brain heating induced by near-infrared lasers during multiphoton microscopy.
Kaspar Podgorski, Gayathri Ranganathan. J Neurophysiol 2016
83
10

Imaging Cortical Dynamics in GCaMP Transgenic Rats with a Head-Mounted Widefield Macroscope.
Benjamin B Scott, Stephan Y Thiberge, Caiying Guo, D Gowanlock R Tervo, Carlos D Brody, Alla Y Karpova, David W Tank. Neuron 2018
33
27

Flow of cortical activity underlying a tactile decision in mice.
Zengcai V Guo, Nuo Li, Daniel Huber, Eran Ophir, Diego Gutnisky, Jonathan T Ting, Guoping Feng, Karel Svoboda. Neuron 2014
281
9

Large-scale imaging of cortical dynamics during sensory perception and behavior.
Joseph B Wekselblatt, Erik D Flister, Denise M Piscopo, Cristopher M Niell. J Neurophysiol 2016
91
9

Kilohertz two-photon fluorescence microscopy imaging of neural activity in vivo.
Jianglai Wu, Yajie Liang, Shuo Chen, Ching-Lung Hsu, Mariya Chavarha, Stephen W Evans, Dongqing Shi, Michael Z Lin, Kevin K Tsia, Na Ji. Nat Methods 2020
35
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.