A citation-based method for searching scientific literature

Xiaoyan Robert Bao, Shao-En Ong, Olga Goldberger, Jun Peng, Rohit Sharma, Dawn A Thompson, Scott B Vafai, Andrew G Cox, Eizo Marutani, Fumito Ichinose, Wolfram Goessling, Aviv Regev, Steven A Carr, Clary B Clish, Vamsi K Mootha. Elife 2016
Times Cited: 226







List of co-cited articles
922 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Multi-omics analysis identifies ATF4 as a key regulator of the mitochondrial stress response in mammals.
Pedro M Quirós, Miguel A Prado, Nicola Zamboni, Davide D'Amico, Robert W Williams, Daniel Finley, Steven P Gygi, Johan Auwerx. J Cell Biol 2017
268
31

Mitochondrial DNA Replication Defects Disturb Cellular dNTP Pools and Remodel One-Carbon Metabolism.
Joni Nikkanen, Saara Forsström, Liliya Euro, Ilse Paetau, Rebecca A Kohnz, Liya Wang, Dmitri Chilov, Jenni Viinamäki, Anne Roivainen, Päivi Marjamäki,[...]. Cell Metab 2016
133
29

mTORC1 Regulates Mitochondrial Integrated Stress Response and Mitochondrial Myopathy Progression.
Nahid A Khan, Joni Nikkanen, Shuichi Yatsuga, Christopher Jackson, Liya Wang, Swagat Pradhan, Riikka Kivelä, Alberto Pessia, Vidya Velagapudi, Anu Suomalainen. Cell Metab 2017
138
23

One-Carbon Metabolism in Health and Disease.
Gregory S Ducker, Joshua D Rabinowitz. Cell Metab 2017
523
19

The integrated stress response.
Karolina Pakos-Zebrucka, Izabela Koryga, Katarzyna Mnich, Mila Ljujic, Afshin Samali, Adrienne M Gorman. EMBO Rep 2016
671
17

Transcriptomic and proteomic landscape of mitochondrial dysfunction reveals secondary coenzyme Q deficiency in mammals.
Inge Kühl, Maria Miranda, Ilian Atanassov, Irina Kuznetsova, Yvonne Hinze, Arnaud Mourier, Aleksandra Filipovska, Nils-Göran Larsson. Elife 2017
68
22

Supporting Aspartate Biosynthesis Is an Essential Function of Respiration in Proliferating Cells.
Lucas B Sullivan, Dan Y Gui, Aaron M Hosios, Lauren N Bush, Elizaveta Freinkman, Matthew G Vander Heiden. Cell 2015
467
14

Quantitative flux analysis reveals folate-dependent NADPH production.
Jing Fan, Jiangbin Ye, Jurre J Kamphorst, Tomer Shlomi, Craig B Thompson, Joshua D Rabinowitz. Nature 2014
561
14

A mitochondrial specific stress response in mammalian cells.
Quan Zhao, Jianghui Wang, Ilya V Levichkin, Stan Stasinopoulos, Michael T Ryan, Nicholas J Hoogenraad. EMBO J 2002
580
14

MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins.
Sarah E Calvo, Karl R Clauser, Vamsi K Mootha. Nucleic Acids Res 2016
710
14

An Essential Role of the Mitochondrial Electron Transport Chain in Cell Proliferation Is to Enable Aspartate Synthesis.
Kıvanç Birsoy, Tim Wang, Walter W Chen, Elizaveta Freinkman, Monther Abu-Remaileh, David M Sabatini. Cell 2015
530
14

Fibroblast Growth Factor 21 Drives Dynamics of Local and Systemic Stress Responses in Mitochondrial Myopathy with mtDNA Deletions.
Saara Forsström, Christopher B Jackson, Christopher J Carroll, Mervi Kuronen, Eija Pirinen, Swagat Pradhan, Anastasiia Marmyleva, Mari Auranen, Iida-Marja Kleine, Nahid A Khan,[...]. Cell Metab 2019
44
31

Mitochondrial myopathy induces a starvation-like response.
Henna Tyynismaa, Christopher J Carroll, Nuno Raimundo, Sofia Ahola-Erkkilä, Tina Wenz, Heini Ruhanen, Kilian Guse, Akseli Hemminki, Katja E Peltola-Mjøsund, Valtteri Tulkki,[...]. Hum Mol Genet 2010
173
13

Reversal of Cytosolic One-Carbon Flux Compensates for Loss of the Mitochondrial Folate Pathway.
Gregory S Ducker, Li Chen, Raphael J Morscher, Jonathan M Ghergurovich, Mark Esposito, Xin Teng, Yibin Kang, Joshua D Rabinowitz. Cell Metab 2016
150
13

An integrated stress response regulates amino acid metabolism and resistance to oxidative stress.
Heather P Harding, Yuhong Zhang, Huiquing Zeng, Isabel Novoa, Phoebe D Lu, Marcella Calfon, Navid Sadri, Chi Yun, Brian Popko, Richard Paules,[...]. Mol Cell 2003
13

The Transcription Factor ATF5 Mediates a Mammalian Mitochondrial UPR.
Christopher J Fiorese, Anna M Schulz, Yi-Fan Lin, Nadine Rosin, Mark W Pellegrino, Cole M Haynes. Curr Biol 2016
236
13


mTORC1 induces purine synthesis through control of the mitochondrial tetrahydrofolate cycle.
Issam Ben-Sahra, Gerta Hoxhaj, Stéphane J H Ricoult, John M Asara, Brendan D Manning. Science 2016
338
12

Mitochondrial translation requires folate-dependent tRNA methylation.
Raphael J Morscher, Gregory S Ducker, Sophia Hsin-Jung Li, Johannes A Mayer, Zemer Gitai, Wolfgang Sperl, Joshua D Rabinowitz. Nature 2018
92
13

Functional genomics reveal that the serine synthesis pathway is essential in breast cancer.
Richard Possemato, Kevin M Marks, Yoav D Shaul, Michael E Pacold, Dohoon Kim, Kıvanç Birsoy, Shalini Sethumadhavan, Hin-Koon Woo, Hyun G Jang, Abhishek K Jha,[...]. Nature 2011
908
12

Tracing compartmentalized NADPH metabolism in the cytosol and mitochondria of mammalian cells.
Caroline A Lewis, Seth J Parker, Brian P Fiske, Douglas McCloskey, Dan Y Gui, Courtney R Green, Natalie I Vokes, Adam M Feist, Matthew G Vander Heiden, Christian M Metallo. Mol Cell 2014
297
12

Serine one-carbon catabolism with formate overflow.
Johannes Meiser, Sergey Tumanov, Oliver Maddocks, Christiaan Fred Labuschagne, Dimitris Athineos, Niels Van Den Broek, Gillian M Mackay, Eyal Gottlieb, Karen Blyth, Karen Vousden,[...]. Sci Adv 2016
62
19

Modulating the therapeutic response of tumours to dietary serine and glycine starvation.
Oliver D K Maddocks, Dimitris Athineos, Eric C Cheung, Pearl Lee, Tong Zhang, Niels J F van den Broek, Gillian M Mackay, Christiaan F Labuschagne, David Gay, Flore Kruiswijk,[...]. Nature 2017
197
11

Phosphoglycerate dehydrogenase diverts glycolytic flux and contributes to oncogenesis.
Jason W Locasale, Alexandra R Grassian, Tamar Melman, Costas A Lyssiotis, Katherine R Mattaini, Adam J Bass, Gregory Heffron, Christian M Metallo, Taru Muranen, Hadar Sharfi,[...]. Nat Genet 2011
669
11

Mitochondrial stress is relayed to the cytosol by an OMA1-DELE1-HRI pathway.
Xiaoyan Guo, Giovanni Aviles, Yi Liu, Ruilin Tian, Bret A Unger, Yu-Hsiu T Lin, Arun P Wiita, Ke Xu, M Almira Correia, Martin Kampmann. Nature 2020
67
16

Mitochondria: in sickness and in health.
Jodi Nunnari, Anu Suomalainen. Cell 2012
10

Tissue-specific loss of DARS2 activates stress responses independently of respiratory chain deficiency in the heart.
Sukru Anil Dogan, Claire Pujol, Priyanka Maiti, Alexandra Kukat, Shuaiyu Wang, Steffen Hermans, Katharina Senft, Rolf Wibom, Elena I Rugarli, Aleksandra Trifunovic. Cell Metab 2014
113
10

NRF2 regulates serine biosynthesis in non-small cell lung cancer.
Gina M DeNicola, Pei-Hsuan Chen, Edouard Mullarky, Jessica A Sudderth, Zeping Hu, David Wu, Hao Tang, Yang Xie, John M Asara, Kenneth E Huffman,[...]. Nat Genet 2015
353
10

Serine, but not glycine, supports one-carbon metabolism and proliferation of cancer cells.
Christiaan F Labuschagne, Niels J F van den Broek, Gillian M Mackay, Karen H Vousden, Oliver D K Maddocks. Cell Rep 2014
283
10

Serine starvation induces stress and p53-dependent metabolic remodelling in cancer cells.
Oliver D K Maddocks, Celia R Berkers, Susan M Mason, Liang Zheng, Karen Blyth, Eyal Gottlieb, Karen H Vousden. Nature 2013
506
10

Metabolic enzyme expression highlights a key role for MTHFD2 and the mitochondrial folate pathway in cancer.
Roland Nilsson, Mohit Jain, Nikhil Madhusudhan, Nina Gustafsson Sheppard, Laura Strittmatter, Caroline Kampf, Jenny Huang, Anna Asplund, Vamsi K Mootha. Nat Commun 2014
265
10

Serine and one-carbon metabolism in cancer.
Ming Yang, Karen H Vousden. Nat Rev Cancer 2016
330
10

Mitochondrial import efficiency of ATFS-1 regulates mitochondrial UPR activation.
Amrita M Nargund, Mark W Pellegrino, Christopher J Fiorese, Brooke M Baker, Cole M Haynes. Science 2012
499
10

Serine Catabolism Feeds NADH when Respiration Is Impaired.
Lifeng Yang, Juan Carlos Garcia Canaveras, Zihong Chen, Lin Wang, Lingfan Liang, Cholsoon Jang, Johannes A Mayr, Zhaoyue Zhang, Jonathan M Ghergurovich, Le Zhan,[...]. Cell Metab 2020
33
30

dATF4 regulation of mitochondrial folate-mediated one-carbon metabolism is neuroprotective.
Ivana Celardo, Susann Lehmann, Ana C Costa, Samantha Hy Loh, L Miguel Martins. Cell Death Differ 2017
27
33

ER-stress-induced transcriptional regulation increases protein synthesis leading to cell death.
Jaeseok Han, Sung Hoon Back, Junguk Hur, Yu-Hsuan Lin, Robert Gildersleeve, Jixiu Shan, Celvie L Yuan, Dawid Krokowski, Shiyu Wang, Maria Hatzoglou,[...]. Nat Cell Biol 2013
849
9

FGF21 is a biomarker for mitochondrial translation and mtDNA maintenance disorders.
Jenni M Lehtonen, Saara Forsström, Emanuela Bottani, Carlo Viscomi, Olivier R Baris, Helena Isoniemi, Krister Höckerstedt, Pia Österlund, Mikko Hurme, Juulia Jylhävä,[...]. Neurology 2016
89
10

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
9


Serine Metabolism Supports the Methionine Cycle and DNA/RNA Methylation through De Novo ATP Synthesis in Cancer Cells.
Oliver D K Maddocks, Christiaan F Labuschagne, Peter D Adams, Karen H Vousden. Mol Cell 2016
199
9

Compartmentalization of Mammalian folate-mediated one-carbon metabolism.
Anne S Tibbetts, Dean R Appling. Annu Rev Nutr 2010
358
9

A pathway coordinated by DELE1 relays mitochondrial stress to the cytosol.
Evelyn Fessler, Eva-Maria Eckl, Sabine Schmitt, Igor Alves Mancilla, Matthias F Meyer-Bender, Monika Hanf, Julia Philippou-Massier, Stefan Krebs, Hans Zischka, Lucas T Jae. Nature 2020
61
14

The Mitochondrial Basis of Aging.
Nuo Sun, Richard J Youle, Toren Finkel. Mol Cell 2016
494
8


Complementation of mitochondrial electron transport chain by manipulation of the NAD+/NADH ratio.
Denis V Titov, Valentin Cracan, Russell P Goodman, Jun Peng, Zenon Grabarek, Vamsi K Mootha. Science 2016
129
8

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
8

A PHGDH inhibitor reveals coordination of serine synthesis and one-carbon unit fate.
Michael E Pacold, Kyle R Brimacombe, Sze Ham Chan, Jason M Rohde, Caroline A Lewis, Lotteke J Y M Swier, Richard Possemato, Walter W Chen, Lucas B Sullivan, Brian P Fiske,[...]. Nat Chem Biol 2016
204
8

New roles for mitochondrial proteases in health, ageing and disease.
Pedro M Quirós, Thomas Langer, Carlos López-Otín. Nat Rev Mol Cell Biol 2015
271
8

Serine and glycine metabolism in cancer.
Ivano Amelio, Francesca Cutruzzolá, Alexey Antonov, Massimiliano Agostini, Gerry Melino. Trends Biochem Sci 2014
436
8

Selective induction of mitochondrial chaperones in response to loss of the mitochondrial genome.
R D Martinus, G P Garth, T L Webster, P Cartwright, D J Naylor, P B Høj, N J Hoogenraad. Eur J Biochem 1996
211
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.