A citation-based method for searching scientific literature

Akatsuki Saito, Matthew S Henning, Erik Serrao, Brittany N Dubose, Samantha Teng, Jing Huang, Xiangming Li, Namiko Saito, Saumendra Prasad Roy, Mohammad Adnan Siddiqui, Jinwoo Ahn, Moriya Tsuji, Theodora Hatziioannou, Alan N Engelman, Masahiro Yamashita. J Virol 2016
Times Cited: 38







List of co-cited articles
627 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Flexible use of nuclear import pathways by HIV-1.
KyeongEun Lee, Zandrea Ambrose, Thomas D Martin, Ilker Oztop, Alok Mulky, John G Julias, Nick Vandegraaff, Joerg G Baumann, Rui Wang, Wendy Yuen,[...]. Cell Host Microbe 2010
302
78

A critical role for alternative polyadenylation factor CPSF6 in targeting HIV-1 integration to transcriptionally active chromatin.
Gregory A Sowd, Erik Serrao, Hao Wang, Weifeng Wang, Hind J Fadel, Eric M Poeschla, Alan N Engelman. Proc Natl Acad Sci U S A 2016
125
65

Host cofactors and pharmacologic ligands share an essential interface in HIV-1 capsid that is lost upon disassembly.
Amanda J Price, David A Jacques, William A McEwan, Adam J Fletcher, Sebastian Essig, Jason W Chin, Upul D Halambage, Christopher Aiken, Leo C James. PLoS Pathog 2014
157
63

CPSF6 defines a conserved capsid interface that modulates HIV-1 replication.
Amanda J Price, Adam J Fletcher, Torsten Schaller, Tom Elliott, KyeongEun Lee, Vineet N KewalRamani, Jason W Chin, Greg J Towers, Leo C James. PLoS Pathog 2012
163
63

HIV-1 capsid-cyclophilin interactions determine nuclear import pathway, integration targeting and replication efficiency.
Torsten Schaller, Karen E Ocwieja, Jane Rasaiyaah, Amanda J Price, Troy L Brady, Shoshannah L Roth, Stéphane Hué, Adam J Fletcher, KyeongEun Lee, Vineet N KewalRamani,[...]. PLoS Pathog 2011
316
60


HIV-1 capsid: the multifaceted key player in HIV-1 infection.
Edward M Campbell, Thomas J Hope. Nat Rev Microbiol 2015
215
55

Structural basis of HIV-1 capsid recognition by PF74 and CPSF6.
Akash Bhattacharya, Steven L Alam, Thomas Fricke, Kaneil Zadrozny, Jaroslaw Sedzicki, Alexander B Taylor, Borries Demeler, Owen Pornillos, Barbie K Ganser-Pornillos, Felipe Diaz-Griffero,[...]. Proc Natl Acad Sci U S A 2014
140
55

Quantitative microscopy of functional HIV post-entry complexes reveals association of replication with the viral capsid.
Ke Peng, Walter Muranyi, Bärbel Glass, Vibor Laketa, Stephen R Yant, Luong Tsai, Tomas Cihlar, Barbara Müller, Hans-Georg Kräusslich. Elife 2014
119
52

HIV-1 evades innate immune recognition through specific cofactor recruitment.
Jane Rasaiyaah, Choon Ping Tan, Adam J Fletcher, Amanda J Price, Caroline Blondeau, Laura Hilditch, David A Jacques, David L Selwood, Leo C James, Mahdad Noursadeghi,[...]. Nature 2013
295
52


Direct Visualization of HIV-1 Replication Intermediates Shows that Capsid and CPSF6 Modulate HIV-1 Intra-nuclear Invasion and Integration.
Christopher R Chin, Jill M Perreira, George Savidis, Jocelyn M Portmann, Aaron M Aker, Eric M Feeley, Miles C Smith, Abraham L Brass. Cell Rep 2015
92
50

Capsid-CPSF6 Interaction Licenses Nuclear HIV-1 Trafficking to Sites of Viral DNA Integration.
Vasudevan Achuthan, Jill M Perreira, Gregory A Sowd, Maritza Puray-Chavez, William M McDougall, Adriana Paulucci-Holthauzen, Xiaolin Wu, Hind J Fadel, Eric M Poeschla, Asha S Multani,[...]. Cell Host Microbe 2018
78
50

HIV-1 nuclear import in macrophages is regulated by CPSF6-capsid interactions at the nuclear pore complex.
David Alejandro Bejarano, Ke Peng, Vibor Laketa, Kathleen Börner, K Laurence Jost, Bojana Lucic, Bärbel Glass, Marina Lusic, Barbara Müller, Hans-Georg Kräusslich. Elife 2019
77
50

HIV-1 uncoats in the nucleus near sites of integration.
Ryan C Burdick, Chenglei Li, MohamedHusen Munshi, Jonathan M O Rawson, Kunio Nagashima, Wei-Shau Hu, Vinay K Pathak. Proc Natl Acad Sci U S A 2020
82
47

The ability of TNPO3-depleted cells to inhibit HIV-1 infection requires CPSF6.
Thomas Fricke, Jose Carlos Valle-Casuso, Tommy E White, Alberto Brandariz-Nuñez, William J Bosche, Natalia Reszka, Robert Gorelick, Felipe Diaz-Griffero. Retrovirology 2013
67
44

Dynamics and regulation of nuclear import and nuclear movements of HIV-1 complexes.
Ryan C Burdick, Krista A Delviks-Frankenberry, Jianbo Chen, Sanath K Janaka, Jaya Sastri, Wei-Shau Hu, Vinay K Pathak. PLoS Pathog 2017
61
44

TNPO3 protects HIV-1 replication from CPSF6-mediated capsid stabilization in the host cell cytoplasm.
Alberto De Iaco, Federico Santoni, Anne Vannier, Michel Guipponi, Stylianos Antonarakis, Jeremy Luban. Retrovirology 2013
105
42


Capsid-Dependent Host Factors in HIV-1 Infection.
Masahiro Yamashita, Alan N Engelman. Trends Microbiol 2017
61
39

Differential effects of human immunodeficiency virus type 1 capsid and cellular factors nucleoporin 153 and LEDGF/p75 on the efficiency and specificity of viral DNA integration.
Yasuhiro Koh, Xiaolin Wu, Andrea L Ferris, Kenneth A Matreyek, Steven J Smith, KyeongEun Lee, Vineet N KewalRamani, Stephen H Hughes, Alan Engelman. J Virol 2013
85
36

Time-Resolved Imaging of Single HIV-1 Uncoating In Vitro and in Living Cells.
Ashwanth C Francis, Mariana Marin, Jiong Shi, Christopher Aiken, Gregory B Melikyan. PLoS Pathog 2016
70
36

Roles of Capsid-Interacting Host Factors in Multimodal Inhibition of HIV-1 by PF74.
Akatsuki Saito, Damien Ferhadian, Gregory A Sowd, Erik Serrao, Jiong Shi, Upul D Halambage, Samantha Teng, Juan Soto, Mohammad Adnan Siddiqui, Alan N Engelman,[...]. J Virol 2016
49
36


Human immunodeficiency virus type 1 Gag protein binds to cyclophilins A and B.
J Luban, K L Bossolt, E K Franke, G V Kalpana, S P Goff. Cell 1993
672
34

Human immunodeficiency virus type 1 capsid mutation N74D alters cyclophilin A dependence and impairs macrophage infection.
Zandrea Ambrose, KyeongEun Lee, Jean Ndjomou, Hongzhan Xu, Ilker Oztop, James Matous, Taichiro Takemura, Derya Unutmaz, Alan Engelman, Stephen H Hughes,[...]. J Virol 2012
69
34


HIV-1 capsid-targeting domain of cleavage and polyadenylation specificity factor 6.
Kyeongeun Lee, Alok Mulky, Wendy Yuen, Thomas D Martin, Nicholas R Meyerson, Laura Choi, Hyun Yu, Sara L Sawyer, Vineet N Kewalramani. J Virol 2012
59
31

Small-molecule inhibition of human immunodeficiency virus type 1 infection by virus capsid destabilization.
Jiong Shi, Jing Zhou, Vaibhav B Shah, Christopher Aiken, Kevin Whitby. J Virol 2011
167
31

Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics.
Gongpu Zhao, Juan R Perilla, Ernest L Yufenyuy, Xin Meng, Bo Chen, Jiying Ning, Jinwoo Ahn, Angela M Gronenborn, Klaus Schulten, Christopher Aiken,[...]. Nature 2013
443
31

Early cytoplasmic uncoating is associated with infectivity of HIV-1.
João I Mamede, Gianguido C Cianci, Meegan R Anderson, Thomas J Hope. Proc Natl Acad Sci U S A 2017
68
31

Nuclear pore blockade reveals that HIV-1 completes reverse transcription and uncoating in the nucleus.
Adarsh Dharan, Niklas Bachmann, Sarah Talley, Virginia Zwikelmaier, Edward M Campbell. Nat Microbiol 2020
63
31

Nuclear architecture dictates HIV-1 integration site selection.
Bruna Marini, Attila Kertesz-Farkas, Hashim Ali, Bojana Lucic, Kamil Lisek, Lara Manganaro, Sandor Pongor, Roberto Luzzati, Alessandra Recchia, Fulvio Mavilio,[...]. Nature 2015
188
28

KIF5B and Nup358 Cooperatively Mediate the Nuclear Import of HIV-1 during Infection.
Adarsh Dharan, Sarah Talley, Abhishek Tripathi, João I Mamede, Matthias Majetschak, Thomas J Hope, Edward M Campbell. PLoS Pathog 2016
57
28

X-ray structures of the hexameric building block of the HIV capsid.
Owen Pornillos, Barbie K Ganser-Pornillos, Brian N Kelly, Yuanzi Hua, Frank G Whitby, C David Stout, Wesley I Sundquist, Christopher P Hill, Mark Yeager. Cell 2009
357
28

Complementary assays reveal a relationship between HIV-1 uncoating and reverse transcription.
Amy E Hulme, Omar Perez, Thomas J Hope. Proc Natl Acad Sci U S A 2011
176
28

Nup153 and Nup98 bind the HIV-1 core and contribute to the early steps of HIV-1 replication.
Francesca Di Nunzio, Thomas Fricke, Annarita Miccio, Jose Carlos Valle-Casuso, Patricio Perez, Philippe Souque, Ermanno Rizzi, Marco Severgnini, Fulvio Mavilio, Pierre Charneau,[...]. Virology 2013
99
28

STRUCTURAL VIROLOGY. X-ray crystal structures of native HIV-1 capsid protein reveal conformational variability.
Anna T Gres, Karen A Kirby, Vineet N KewalRamani, John J Tanner, Owen Pornillos, Stefan G Sarafianos. Science 2015
130
28

Structural basis for nuclear import of splicing factors by human Transportin 3.
Goedele N Maertens, Nicola J Cook, Weifeng Wang, Stephen Hare, Saumya Shree Gupta, Ilker Öztop, KyeongEun Lee, Valerie E Pye, Ophélie Cosnefroy, Ambrosius P Snijders,[...]. Proc Natl Acad Sci U S A 2014
81
28

A cyclophilin homology domain-independent role for Nup358 in HIV-1 infection.
Anne M Meehan, Dyana T Saenz, Rebekah Guevera, James H Morrison, Mary Peretz, Hind J Fadel, Masakazu Hamada, Jan van Deursen, Eric M Poeschla. PLoS Pathog 2014
38
28

Transportin 3 promotes a nuclear maturation step required for efficient HIV-1 integration.
Lihong Zhou, Elena Sokolskaja, Clare Jolly, William James, Sally A Cowley, Ariberto Fassati. PLoS Pathog 2011
100
28

Formation of a human immunodeficiency virus type 1 core of optimal stability is crucial for viral replication.
Brett M Forshey, Uta von Schwedler, Wesley I Sundquist, Christopher Aiken. J Virol 2002
384
28

Structural organization of authentic, mature HIV-1 virions and cores.
John A G Briggs, Thomas Wilk, Reinhold Welker, Hans-Georg Kräusslich, Stephen D Fuller. EMBO J 2003
322
28

HIV-1 replication complexes accumulate in nuclear speckles and integrate into speckle-associated genomic domains.
Ashwanth C Francis, Mariana Marin, Parmit K Singh, Vasudevan Achuthan, Mathew J Prellberg, Kristina Palermino-Rowland, Shuiyun Lan, Philip R Tedbury, Stefan G Sarafianos, Alan N Engelman,[...]. Nat Commun 2020
34
32

HIV-1 integration in the human genome favors active genes and local hotspots.
Astrid R W Schröder, Paul Shinn, Huaming Chen, Charles Berry, Joseph R Ecker, Frederic Bushman. Cell 2002
26

HIV-1 DNA Flap formation promotes uncoating of the pre-integration complex at the nuclear pore.
Nathalie J Arhel, Sylvie Souquere-Besse, Sandie Munier, Philippe Souque, Stéphanie Guadagnini, Sandra Rutherford, Marie-Christine Prévost, Terry D Allen, Pierre Charneau. EMBO J 2007
201
26

HIV capsid is a tractable target for small molecule therapeutic intervention.
Wade S Blair, Chris Pickford, Stephen L Irving, David G Brown, Marie Anderson, Richard Bazin, Joan Cao, Giuseppe Ciaramella, Jason Isaacson, Lynn Jackson,[...]. PLoS Pathog 2010
184
26

MX2 is an interferon-induced inhibitor of HIV-1 infection.
Melissa Kane, Shalini S Yadav, Julia Bitzegeio, Sebla B Kutluay, Trinity Zang, Sam J Wilson, John W Schoggins, Charles M Rice, Masahiro Yamashita, Theodora Hatziioannou,[...]. Nature 2013
317
26

Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication.
Renate König, Yingyao Zhou, Daniel Elleder, Tracy L Diamond, Ghislain M C Bonamy, Jeffrey T Irelan, Chih-Yuan Chiang, Buu P Tu, Paul D De Jesus, Caroline E Lilley,[...]. Cell 2008
719
26

HIV integration targeting: a pathway involving Transportin-3 and the nuclear pore protein RanBP2.
Karen E Ocwieja, Troy L Brady, Keshet Ronen, Alyssa Huegel, Shoshannah L Roth, Torsten Schaller, Leo C James, Greg J Towers, John A T Young, Sumit K Chanda,[...]. PLoS Pathog 2011
164
26


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.