A citation-based method for searching scientific literature

Sonia Nestorowa, Fiona K Hamey, Blanca Pijuan Sala, Evangelia Diamanti, Mairi Shepherd, Elisa Laurenti, Nicola K Wilson, David G Kent, Berthold Göttgens. Blood 2016
Times Cited: 237







List of co-cited articles
899 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
30

Human haematopoietic stem cell lineage commitment is a continuous process.
Lars Velten, Simon F Haas, Simon Raffel, Sandra Blaszkiewicz, Saiful Islam, Bianca P Hennig, Christoph Hirche, Christoph Lutz, Eike C Buss, Daniel Nowak,[...]. Nat Cell Biol 2017
327
22

Transcriptional Heterogeneity and Lineage Commitment in Myeloid Progenitors.
Franziska Paul, Ya'ara Arkin, Amir Giladi, Diego Adhemar Jaitin, Ephraim Kenigsberg, Hadas Keren-Shaul, Deborah Winter, David Lara-Astiaso, Meital Gury, Assaf Weiner,[...]. Cell 2015
475
22

From haematopoietic stem cells to complex differentiation landscapes.
Elisa Laurenti, Berthold Göttgens. Nature 2018
238
20

Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
19

Distinct routes of lineage development reshape the human blood hierarchy across ontogeny.
Faiyaz Notta, Sasan Zandi, Naoya Takayama, Stephanie Dobson, Olga I Gan, Gavin Wilson, Kerstin B Kaufmann, Jessica McLeod, Elisa Laurenti, Cyrille F Dunant,[...]. Science 2016
380
18

Population snapshots predict early haematopoietic and erythroid hierarchies.
Betsabeh Khoramian Tusi, Samuel L Wolock, Caleb Weinreb, Yung Hwang, Daniel Hidalgo, Rapolas Zilionis, Ari Waisman, Jun R Huh, Allon M Klein, Merav Socolovsky. Nature 2018
149
18

Platelet-biased stem cells reside at the apex of the haematopoietic stem-cell hierarchy.
Alejandra Sanjuan-Pla, Iain C Macaulay, Christina T Jensen, Petter S Woll, Tiago C Luis, Adam Mead, Susan Moore, Cintia Carella, Sahoko Matsuoka, Tiphaine Bouriez Jones,[...]. Nature 2013
321
16

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.
Cole Trapnell, Davide Cacchiarelli, Jonna Grimsby, Prapti Pokharel, Shuqiang Li, Michael Morse, Niall J Lennon, Kenneth J Livak, Tarjei S Mikkelsen, John L Rinn. Nat Biotechnol 2014
16

Massively parallel digital transcriptional profiling of single cells.
Grace X Y Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu,[...]. Nat Commun 2017
16

Clonal analysis unveils self-renewing lineage-restricted progenitors generated directly from hematopoietic stem cells.
Ryo Yamamoto, Yohei Morita, Jun Ooehara, Sanae Hamanaka, Masafumi Onodera, Karl Lenhard Rudolph, Hideo Ema, Hiromitsu Nakauchi. Cell 2013
378
14

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.
Allon M Klein, Linas Mazutis, Ilke Akartuna, Naren Tallapragada, Adrian Veres, Victor Li, Leonid Peshkin, David A Weitz, Marc W Kirschner. Cell 2015
13

A clonogenic common myeloid progenitor that gives rise to all myeloid lineages.
K Akashi, D Traver, T Miyamoto, I L Weissman. Nature 2000
12

Functionally Distinct Subsets of Lineage-Biased Multipotent Progenitors Control Blood Production in Normal and Regenerative Conditions.
Eric M Pietras, Damien Reynaud, Yoon-A Kang, Daniel Carlin, Fernando J Calero-Nieto, Andrew D Leavitt, Joshua M Stuart, Berthold Göttgens, Emmanuelle Passegué. Cell Stem Cell 2015
236
12

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
12

Clonal analysis of lineage fate in native haematopoiesis.
Alejo E Rodriguez-Fraticelli, Samuel L Wolock, Caleb S Weinreb, Riccardo Panero, Sachin H Patel, Maja Jankovic, Jianlong Sun, Raffaele A Calogero, Allon M Klein, Fernando D Camargo. Nature 2018
198
11

SCENIC: single-cell regulatory network inference and clustering.
Sara Aibar, Carmen Bravo González-Blas, Thomas Moerman, Vân Anh Huynh-Thu, Hana Imrichova, Gert Hulselmans, Florian Rambow, Jean-Christophe Marine, Pierre Geurts, Jan Aerts,[...]. Nat Methods 2017
631
11

RNA velocity of single cells.
Gioele La Manno, Ruslan Soldatov, Amit Zeisel, Emelie Braun, Hannah Hochgerner, Viktor Petukhov, Katja Lidschreiber, Maria E Kastriti, Peter Lönnerberg, Alessandro Furlan,[...]. Nature 2018
676
11

Single-cell analysis of mixed-lineage states leading to a binary cell fate choice.
Andre Olsson, Meenakshi Venkatasubramanian, Viren K Chaudhri, Bruce J Aronow, Nathan Salomonis, Harinder Singh, H Leighton Grimes. Nature 2016
257
11

Fundamental properties of unperturbed haematopoiesis from stem cells in vivo.
Katrin Busch, Kay Klapproth, Melania Barile, Michael Flossdorf, Tim Holland-Letz, Susan M Schlenner, Michael Reth, Thomas Höfer, Hans-Reimer Rodewald. Nature 2015
364
10

Combined Single-Cell Functional and Gene Expression Analysis Resolves Heterogeneity within Stem Cell Populations.
Nicola K Wilson, David G Kent, Florian Buettner, Mona Shehata, Iain C Macaulay, Fernando J Calero-Nieto, Manuel Sánchez Castillo, Caroline A Oedekoven, Evangelia Diamanti, Reiner Schulte,[...]. Cell Stem Cell 2015
249
10

A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia.
Ninib Baryawno, Dariusz Przybylski, Monika S Kowalczyk, Youmna Kfoury, Nicolas Severe, Karin Gustafsson, Konstantinos D Kokkaliaris, Francois Mercier, Marcin Tabaka, Matan Hofree,[...]. Cell 2019
215
10

The bone marrow microenvironment at single-cell resolution.
Anastasia N Tikhonova, Igor Dolgalev, Hai Hu, Kishor K Sivaraj, Edlira Hoxha, Álvaro Cuesta-Domínguez, Sandra Pinho, Ilseyar Akhmetzyanova, Jie Gao, Matthew Witkowski,[...]. Nature 2019
233
10

Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors.
Laleh Haghverdi, Aaron T L Lun, Michael D Morgan, John C Marioni. Nat Biotechnol 2018
474
10

SLAM family receptors distinguish hematopoietic stem and progenitor cells and reveal endothelial niches for stem cells.
Mark J Kiel, Omer H Yilmaz, Toshihide Iwashita, Osman H Yilmaz, Cox Terhorst, Sean J Morrison. Cell 2005
9

Clonal dynamics of native haematopoiesis.
Jianlong Sun, Azucena Ramos, Brad Chapman, Jonathan B Johnnidis, Linda Le, Yu-Jui Ho, Allon Klein, Oliver Hofmann, Fernando D Camargo. Nature 2014
445
9

SCANPY: large-scale single-cell gene expression data analysis.
F Alexander Wolf, Philipp Angerer, Fabian J Theis. Genome Biol 2018
720
9

Fundamental limits on dynamic inference from single-cell snapshots.
Caleb Weinreb, Samuel Wolock, Betsabeh K Tusi, Merav Socolovsky, Allon M Klein. Proc Natl Acad Sci U S A 2018
88
10


Single-cell characterization of haematopoietic progenitors and their trajectories in homeostasis and perturbed haematopoiesis.
Amir Giladi, Franziska Paul, Yoni Herzog, Yaniv Lubling, Assaf Weiner, Ido Yofe, Diego Jaitin, Nina Cabezas-Wallscheid, Regine Dress, Florent Ginhoux,[...]. Nat Cell Biol 2018
106
9

Lineage tracing on transcriptional landscapes links state to fate during differentiation.
Caleb Weinreb, Alejo Rodriguez-Fraticelli, Fernando D Camargo, Allon M Klein. Science 2020
114
9


Hematopoietic stem cells reversibly switch from dormancy to self-renewal during homeostasis and repair.
Anne Wilson, Elisa Laurenti, Gabriela Oser, Richard C van der Wath, William Blanco-Bose, Maike Jaworski, Sandra Offner, Cyrille F Dunant, Leonid Eshkind, Ernesto Bockamp,[...]. Cell 2008
8

Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation.
Jason D Buenrostro, M Ryan Corces, Caleb A Lareau, Beijing Wu, Alicia N Schep, Martin J Aryee, Ravindra Majeti, Howard Y Chang, William J Greenleaf. Cell 2018
191
8

Hierarchically related lineage-restricted fates of multipotent haematopoietic stem cells.
Joana Carrelha, Yiran Meng, Laura M Kettyle, Tiago C Luis, Ruggiero Norfo, Verónica Alcolea, Hanane Boukarabila, Francesca Grasso, Adriana Gambardella, Amit Grover,[...]. Nature 2018
133
8

Challenges in unsupervised clustering of single-cell RNA-seq data.
Vladimir Yu Kiselev, Tallulah S Andrews, Martin Hemberg. Nat Rev Genet 2019
215
8

Dimensionality reduction for visualizing single-cell data using UMAP.
Etienne Becht, Leland McInnes, John Healy, Charles-Antoine Dutertre, Immanuel W H Kwok, Lai Guan Ng, Florent Ginhoux, Evan W Newell. Nat Biotechnol 2018
821
8

A single-cell hematopoietic landscape resolves 8 lineage trajectories and defects in Kit mutant mice.
Joakim S Dahlin, Fiona K Hamey, Blanca Pijuan-Sala, Mairi Shepherd, Winnie W Y Lau, Sonia Nestorowa, Caleb Weinreb, Samuel Wolock, Rebecca Hannah, Evangelia Diamanti,[...]. Blood 2018
58
13

Identification of regulatory networks in HSCs and their immediate progeny via integrated proteome, transcriptome, and DNA methylome analysis.
Nina Cabezas-Wallscheid, Daniel Klimmeck, Jenny Hansson, Daniel B Lipka, Alejandro Reyes, Qi Wang, Dieter Weichenhan, Amelie Lier, Lisa von Paleske, Simon Renders,[...]. Cell Stem Cell 2014
270
8

Prospective isolation and molecular characterization of hematopoietic stem cells with durable self-renewal potential.
David G Kent, Michael R Copley, Claudia Benz, Stefan Wöhrer, Brad J Dykstra, Elaine Ma, John Cheyne, Yongjun Zhao, Michelle B Bowie, Yun Zhao,[...]. Blood 2009
208
8

Endothelial and perivascular cells maintain haematopoietic stem cells.
Lei Ding, Thomas L Saunders, Grigori Enikolopov, Sean J Morrison. Nature 2012
8

Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors.
Alexandra-Chloé Villani, Rahul Satija, Gary Reynolds, Siranush Sarkizova, Karthik Shekhar, James Fletcher, Morgane Griesbeck, Andrew Butler, Shiwei Zheng, Suzan Lazo,[...]. Science 2017
918
8

Simultaneous epitope and transcriptome measurement in single cells.
Marlon Stoeckius, Christoph Hafemeister, William Stephenson, Brian Houck-Loomis, Pratip K Chattopadhyay, Harold Swerdlow, Rahul Satija, Peter Smibert. Nat Methods 2017
673
8

Single-Cell RNA-Seq Reveals AML Hierarchies Relevant to Disease Progression and Immunity.
Peter van Galen, Volker Hovestadt, Marc H Wadsworth Ii, Travis K Hughes, Gabriel K Griffin, Sofia Battaglia, Julia A Verga, Jason Stephansky, Timothy J Pastika, Jennifer Lombardi Story,[...]. Cell 2019
205
8

M-CSF instructs myeloid lineage fate in single haematopoietic stem cells.
Noushine Mossadegh-Keller, Sandrine Sarrazin, Prashanth K Kandalla, Leon Espinosa, E Richard Stanley, Stephen L Nutt, Jordan Moore, Michael H Sieweke. Nature 2013
213
8

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
8

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq.
Itay Tirosh, Benjamin Izar, Sanjay M Prakadan, Marc H Wadsworth, Daniel Treacy, John J Trombetta, Asaf Rotem, Christopher Rodman, Christine Lian, George Murphy,[...]. Science 2016
8

Inflammation-Induced Emergency Megakaryopoiesis Driven by Hematopoietic Stem Cell-like Megakaryocyte Progenitors.
Simon Haas, Jenny Hansson, Daniel Klimmeck, Dirk Loeffler, Lars Velten, Hannah Uckelmann, Stephan Wurzer, Áine M Prendergast, Alexandra Schnell, Klaus Hexel,[...]. Cell Stem Cell 2015
200
7

Long-term propagation of distinct hematopoietic differentiation programs in vivo.
Brad Dykstra, David Kent, Michelle Bowie, Lindsay McCaffrey, Melisa Hamilton, Kristin Lyons, Shang-Jung Lee, Ryan Brinkman, Connie Eaves. Cell Stem Cell 2007
389
7

Thrombopoietin/MPL signaling regulates hematopoietic stem cell quiescence and interaction with the osteoblastic niche.
Hiroki Yoshihara, Fumio Arai, Kentaro Hosokawa, Tetsuya Hagiwara, Keiyo Takubo, Yuka Nakamura, Yumiko Gomei, Hiroko Iwasaki, Sahoko Matsuoka, Kana Miyamoto,[...]. Cell Stem Cell 2007
483
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.