A citation-based method for searching scientific literature

Bo Yuan, Juanita Neira, Shen Gu, Tamar Harel, Pengfei Liu, Ignacio Briceño, Sarah H Elsea, Alberto Gómez, Lorraine Potocki, James R Lupski. Hum Genet 2016
Times Cited: 2







List of co-cited articles
1 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


DNA duplication associated with Charcot-Marie-Tooth disease type 1A.
J R Lupski, R M de Oca-Luna, S Slaugenhaupt, L Pentao, V Guzzetta, B J Trask, O Saucedo-Cardenas, D F Barker, J M Killian, C A Garcia,[...]. Cell 1991
100

Integrative analysis of 111 reference human epigenomes.
Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi-Moussavi, Pouya Kheradpour, Zhizhuo Zhang, Jianrong Wang, Michael J Ziller,[...]. Nature 2015
50

MicroRNA-mediated repression of nonsense mRNAs.
Ya Zhao, Jimin Lin, Beiying Xu, Sida Hu, Xue Zhang, Ligang Wu. Elife 2014
25
50


The zebrafish reference genome sequence and its relationship to the human genome.
Kerstin Howe, Matthew D Clark, Carlos F Torroja, James Torrance, Camille Berthelot, Matthieu Muffato, John E Collins, Sean Humphray, Karen McLaren, Lucy Matthews,[...]. Nature 2013
50

Finding the genes in genomic DNA.
C B Burge, S Karlin. Curr Opin Struct Biol 1998
332
50

De novo microduplication of the FMR1 gene in a patient with developmental delay, epilepsy and hyperactivity.
Jaime Vengoechea, Aditi S Parikh, Shulin Zhang, Flora Tassone. Eur J Hum Genet 2012
16
50

mRNA transcript diversity creates new opportunities for pharmacological intervention.
Elizabeth S Barrie, Ryan M Smith, Jonathan C Sanford, Wolfgang Sadee. Mol Pharmacol 2012
34
50

Gene prediction with a hidden Markov model and a new intron submodel.
Mario Stanke, Stephan Waack. Bioinformatics 2003
750
50

The reality of pervasive transcription.
Michael B Clark, Paulo P Amaral, Felix J Schlesinger, Marcel E Dinger, Ryan J Taft, John L Rinn, Chris P Ponting, Peter F Stadler, Kevin V Morris, Antonin Morillon,[...]. PLoS Biol 2011
292
50

The GENCODE exome: sequencing the complete human exome.
Alison J Coffey, Felix Kokocinski, Maria S Calafato, Carol E Scott, Priit Palta, Eleanor Drury, Christopher J Joyce, Emily M Leproust, Jen Harrow, Sarah Hunt,[...]. Eur J Hum Genet 2011
45
50

The GENCODE pseudogene resource.
Baikang Pei, Cristina Sisu, Adam Frankish, Cédric Howald, Lukas Habegger, Xinmeng Jasmine Mu, Rachel Harte, Suganthi Balasubramanian, Andrea Tanzer, Mark Diekhans,[...]. Genome Biol 2012
213
50

UGA: a third nonsense triplet in the genetic code.
S Brenner, L Barnett, E R Katz, F H Crick. Nature 1967
129
50

Modernizing reference genome assemblies.
Deanna M Church, Valerie A Schneider, Tina Graves, Katherine Auger, Fiona Cunningham, Nathan Bouk, Hsiu-Chuan Chen, Richa Agarwala, William M McLaren, Graham R S Ritchie,[...]. PLoS Biol 2011
225
50


Erosion of Conserved Binding Sites in Personal Genomes Points to Medical Histories.
Harendra Guturu, Sandeep Chinchali, Shoa L Clarke, Gill Bejerano. PLoS Comput Biol 2016
4
50

The impact of structural variation on human gene expression.
Colby Chiang, Alexandra J Scott, Joe R Davis, Emily K Tsang, Xin Li, Yungil Kim, Tarik Hadzic, Farhan N Damani, Liron Ganel, Stephen B Montgomery,[...]. Nat Genet 2017
125
50

A systematic survey of loss-of-function variants in human protein-coding genes.
Daniel G MacArthur, Suganthi Balasubramanian, Adam Frankish, Ni Huang, James Morris, Klaudia Walter, Luke Jostins, Lukas Habegger, Joseph K Pickrell, Stephen B Montgomery,[...]. Science 2012
763
50


The Ensembl Variant Effect Predictor.
William McLaren, Laurent Gil, Sarah E Hunt, Harpreet Singh Riat, Graham R S Ritchie, Anja Thormann, Paul Flicek, Fiona Cunningham. Genome Biol 2016
50

Next-generation sequencing: from basic research to diagnostics.
Karl V Voelkerding, Shale A Dames, Jacob D Durtschi. Clin Chem 2009
375
50

GENCODE pseudogenes.
Adam Frankish, Jennifer Harrow. Methods Mol Biol 2014
24
50

Initial sequencing and analysis of the human genome.
E S Lander, L M Linton, B Birren, C Nusbaum, M C Zody, J Baldwin, K Devon, K Dewar, M Doyle, W FitzHugh,[...]. Nature 2001
50

The DNA sequence of human chromosome 21.
M Hattori, A Fujiyama, T D Taylor, H Watanabe, T Yada, H S Park, A Toyoda, K Ishii, Y Totoki, D K Choi,[...]. Nature 2000
765
50


Whole-genome and whole-exome sequencing in neurological diseases.
Jia-Nee Foo, Jian-Jun Liu, Eng-King Tan. Nat Rev Neurol 2012
75
50

Lineage-specific biology revealed by a finished genome assembly of the mouse.
Deanna M Church, Leo Goodstadt, Ladeana W Hillier, Michael C Zody, Steve Goldstein, Xinwe She, Carol J Bult, Richa Agarwala, Joshua L Cherry, Michael DiCuccio,[...]. PLoS Biol 2009
307
50



Zebrafish as an emerging model for studying complex brain disorders.
Allan V Kalueff, Adam Michael Stewart, Robert Gerlai. Trends Pharmacol Sci 2014
459
50


Pitfalls in genetic testing: the story of missed SCN1A mutations.
Tania Djémié, Sarah Weckhuysen, Sarah von Spiczak, Gemma L Carvill, Johanna Jaehn, Anna-Kaisa Anttonen, Eva Brilstra, Hande S Caglayan, Carolien G de Kovel, Christel Depienne,[...]. Mol Genet Genomic Med 2016
39
50

Trial watch: phase II and phase III attrition rates 2011-2012.
John Arrowsmith, Philip Miller. Nat Rev Drug Discov 2013
336
50

Transcriptome profiling of UPF3B/NMD-deficient lymphoblastoid cells from patients with various forms of intellectual disability.
L S Nguyen, L Jolly, C Shoubridge, W K Chan, L Huang, F Laumonnier, M Raynaud, A Hackett, M Field, J Rodriguez,[...]. Mol Psychiatry 2012
63
50

A missense mutation in a highly conserved alternate exon of dynamin-1 causes epilepsy in fitful mice.
Rebecca M Boumil, Verity A Letts, Monica C Roberts, Christine Lenz, Connie L Mahaffey, Zhong-Wei Zhang, Tobias Moser, Wayne N Frankel. PLoS Genet 2010
71
50

Rfam 12.0: updates to the RNA families database.
Eric P Nawrocki, Sarah W Burge, Alex Bateman, Jennifer Daub, Ruth Y Eberhardt, Sean R Eddy, Evan W Floden, Paul P Gardner, Thomas A Jones, John Tate,[...]. Nucleic Acids Res 2015
631
50

The long noncoding RNA HOTAIR contributes to cisplatin resistance of human lung adenocarcinoma cells via downregualtion of p21(WAF1/CIP1) expression.
Zhili Liu, Ming Sun, Kaihua Lu, Jing Liu, Meiling Zhang, Weiqin Wu, Wei De, Zhaoxia Wang, Rui Wang. PLoS One 2013
223
50

The Landscape of long noncoding RNA classification.
Georges St Laurent, Claes Wahlestedt, Philipp Kapranov. Trends Genet 2015
572
50

A conditional knockout resource for the genome-wide study of mouse gene function.
William C Skarnes, Barry Rosen, Anthony P West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O Mujica, Mark Thomas, Jennifer Harrow, Tony Cox,[...]. Nature 2011
50

Genomic organization of human transcription initiation complexes.
Bryan J Venters, B Franklin Pugh. Nature 2013
47
50

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
50

Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C.
Borbala Mifsud, Filipe Tavares-Cadete, Alice N Young, Robert Sugar, Stefan Schoenfelder, Lauren Ferreira, Steven W Wingett, Simon Andrews, William Grey, Philip A Ewels,[...]. Nat Genet 2015
493
50


The non-obese diabetic mouse sequence, annotation and variation resource: an aid for investigating type 1 diabetes.
Charles A Steward, Jose M Gonzalez, Steve Trevanion, Dan Sheppard, Giselle Kerry, James G R Gilbert, Linda S Wicker, Jane Rogers, Jennifer L Harrow. Database (Oxford) 2013
13
50

Disruption of a large intergenic noncoding RNA in subjects with neurodevelopmental disabilities.
Michael E Talkowski, Gilles Maussion, Liam Crapper, Jill A Rosenfeld, Ian Blumenthal, Carrie Hanscom, Colby Chiang, Amelia Lindgren, Shahrin Pereira, Douglas Ruderfer,[...]. Am J Hum Genet 2012
47
50

The Deciphering Developmental Disorders (DDD) study.
Helen V Firth, Caroline F Wright. Dev Med Child Neurol 2011
89
50


A Whole-Genome Analysis Framework for Effective Identification of Pathogenic Regulatory Variants in Mendelian Disease.
Damian Smedley, Max Schubach, Julius O B Jacobsen, Sebastian Köhler, Tomasz Zemojtel, Malte Spielmann, Marten Jäger, Harry Hochheiser, Nicole L Washington, Julie A McMurry,[...]. Am J Hum Genet 2016
102
50

RefSeq: an update on mammalian reference sequences.
Kim D Pruitt, Garth R Brown, Susan M Hiatt, Françoise Thibaud-Nissen, Alexander Astashyn, Olga Ermolaeva, Catherine M Farrell, Jennifer Hart, Melissa J Landrum, Kelly M McGarvey,[...]. Nucleic Acids Res 2014
639
50

De novo gain-of-function KCNT1 channel mutations cause malignant migrating partial seizures of infancy.
Giulia Barcia, Matthew R Fleming, Aline Deligniere, Valeswara-Rao Gazula, Maile R Brown, Maeva Langouet, Haijun Chen, Jack Kronengold, Avinash Abhyankar, Roberta Cilio,[...]. Nat Genet 2012
267
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.