A citation-based method for searching scientific literature

Samrat Roy Choudhury, Yi Cui, Anoop Narayanan, David P Gilley, Nazmul Huda, Chiao-Ling Lo, Feng C Zhou, Dinesh Yernool, Joseph Irudayaraj. Oncotarget 2016
Times Cited: 18







List of co-cited articles
170 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Photoactivatable CRISPR-Cas9 for optogenetic genome editing.
Yuta Nihongaki, Fuun Kawano, Takahiro Nakajima, Moritoshi Sato. Nat Biotechnol 2015
298
38

Optical control of mammalian endogenous transcription and epigenetic states.
Silvana Konermann, Mark D Brigham, Alexandro Trevino, Patrick D Hsu, Matthias Heidenreich, Le Cong, Randall J Platt, David A Scott, George M Church, Feng Zhang. Nature 2013
519
33

A light-inducible CRISPR-Cas9 system for control of endogenous gene activation.
Lauren R Polstein, Charles A Gersbach. Nat Chem Biol 2015
330
27

Epigenetic Editing of Ascl1 Gene in Neural Stem Cells by Optogenetics.
Chiao-Ling Lo, Samrat Roy Choudhury, Joseph Irudayaraj, Feng C Zhou. Sci Rep 2017
26
27

Engineering light-inducible nuclear localization signals for precise spatiotemporal control of protein dynamics in living cells.
Dominik Niopek, Dirk Benzinger, Julia Roensch, Thomas Draebing, Pierre Wehler, Roland Eils, Barbara Di Ventura. Nat Commun 2014
119
27


Engineered pairs of distinct photoswitches for optogenetic control of cellular proteins.
Fuun Kawano, Hideyuki Suzuki, Akihiro Furuya, Moritoshi Sato. Nat Commun 2015
168
22

A genetically encoded photoactivatable Rac controls the motility of living cells.
Yi I Wu, Daniel Frey, Oana I Lungu, Angelika Jaehrig, Ilme Schlichting, Brian Kuhlman, Klaus M Hahn. Nature 2009
707
22

Optogenetic control of nuclear protein export.
Dominik Niopek, Pierre Wehler, Julia Roensch, Roland Eils, Barbara Di Ventura. Nat Commun 2016
96
22

TULIPs: tunable, light-controlled interacting protein tags for cell biology.
Devin Strickland, Yuan Lin, Elizabeth Wagner, C Matthew Hope, Josiah Zayner, Chloe Antoniou, Tobin R Sosnick, Eric L Weiss, Michael Glotzer. Nat Methods 2012
291
22

Repurposing the CRISPR-Cas9 system for targeted DNA methylation.
Aleksandar Vojta, Paula Dobrinić, Vanja Tadić, Luka Bočkor, Petra Korać, Boris Julg, Marija Klasić, Vlatka Zoldoš. Nucleic Acids Res 2016
350
16

Targeted DNA demethylation and activation of endogenous genes using programmable TALE-TET1 fusion proteins.
Morgan L Maeder, James F Angstman, Marcy E Richardson, Samantha J Linder, Vincent M Cascio, Shengdar Q Tsai, Quan H Ho, Jeffry D Sander, Deepak Reyon, Bradley E Bernstein,[...]. Nat Biotechnol 2013
296
16

The epigenetic regulation of mammalian telomeres.
María A Blasco. Nat Rev Genet 2007
461
16

Telomerase activity is associated with an increase in DNA methylation at the proximal subtelomere and a reduction in telomeric transcription.
Laura J Ng, Jennifer E Cropley, Hilda A Pickett, Roger R Reddel, Catherine M Suter. Nucleic Acids Res 2009
102
16



A light- and calcium-gated transcription factor for imaging and manipulating activated neurons.
Wenjing Wang, Craig P Wildes, Tanyaporn Pattarabanjird, Mateo I Sanchez, Gordon F Glober, Gillian A Matthews, Kay M Tye, Alice Y Ting. Nat Biotechnol 2017
83
16

CRISPR-Cas9-based photoactivatable transcription systems to induce neuronal differentiation.
Yuta Nihongaki, Yuichi Furuhata, Takahiro Otabe, Saki Hasegawa, Keitaro Yoshimoto, Moritoshi Sato. Nat Methods 2017
65
16

Light-activated ion channels for remote control of neuronal firing.
Matthew Banghart, Katharine Borges, Ehud Isacoff, Dirk Trauner, Richard H Kramer. Nat Neurosci 2004
438
16

Photoexcited CRY2 interacts with CIB1 to regulate transcription and floral initiation in Arabidopsis.
Hongtao Liu, Xuhong Yu, Kunwu Li, John Klejnot, Hongyun Yang, Dominique Lisiero, Chentao Lin. Science 2008
396
16

Rapid blue-light-mediated induction of protein interactions in living cells.
Matthew J Kennedy, Robert M Hughes, Leslie A Peteya, Joel W Schwartz, Michael D Ehlers, Chandra L Tucker. Nat Methods 2010
606
16

Near-infrared optogenetic pair for protein regulation and spectral multiplexing.
Taras A Redchuk, Evgeniya S Omelina, Konstantin G Chernov, Vladislav V Verkhusha. Nat Chem Biol 2017
68
16

From dusk till dawn: one-plasmid systems for light-regulated gene expression.
Robert Ohlendorf, Roee R Vidavski, Avigdor Eldar, Keith Moffat, Andreas Möglich. J Mol Biol 2012
116
16

Orthogonal optogenetic triple-gene control in Mammalian cells.
Konrad Müller, Raphael Engesser, Jens Timmer, Matias D Zurbriggen, Wilfried Weber. ACS Synth Biol 2014
39
16

Ultraviolet-B-mediated induction of protein-protein interactions in mammalian cells.
Remco P Crefcoeur, Ruohe Yin, Roman Ulm, Thanos D Halazonetis. Nat Commun 2013
92
16

A New Facet of Vitamin B12: Gene Regulation by Cobalamin-Based Photoreceptors.
S Padmanabhan, Marco Jost, Catherine L Drennan, Montserrat Elías-Arnanz. Annu Rev Biochem 2017
41
16

Optimized second-generation CRY2-CIB dimerizers and photoactivatable Cre recombinase.
Amir Taslimi, Brian Zoltowski, Jose G Miranda, Gopal P Pathak, Robert M Hughes, Chandra L Tucker. Nat Chem Biol 2016
119
16

Structural basis for gene regulation by a B12-dependent photoreceptor.
Marco Jost, Jésus Fernández-Zapata, María Carmen Polanco, Juan Manuel Ortiz-Guerrero, Percival Yang-Ting Chen, Gyunghoon Kang, S Padmanabhan, Montserrat Elías-Arnanz, Catherine L Drennan. Nature 2015
70
16

Optochemical Control of Biological Processes in Cells and Animals.
Nicholas Ankenbruck, Taylor Courtney, Yuta Naro, Alexander Deiters. Angew Chem Int Ed Engl 2018
145
16

DNA methylation: roles in mammalian development.
Zachary D Smith, Alexander Meissner. Nat Rev Genet 2013
16

DNA methyltransferases control telomere length and telomere recombination in mammalian cells.
Susana Gonzalo, Isabel Jaco, Mario F Fraga, Taiping Chen, En Li, Manel Esteller, María A Blasco. Nat Cell Biol 2006
418
16

Comparison of TALE designer transcription factors and the CRISPR/dCas9 in regulation of gene expression by targeting enhancers.
Xuefei Gao, Jason C H Tsang, Fortis Gaba, Donghai Wu, Liming Lu, Pentao Liu. Nucleic Acids Res 2014
108
11


Multiplex genome engineering using CRISPR/Cas systems.
Le Cong, F Ann Ran, David Cox, Shuailiang Lin, Robert Barretto, Naomi Habib, Patrick D Hsu, Xuebing Wu, Wenyan Jiang, Luciano A Marraffini,[...]. Science 2013
11

Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers.
Isaac B Hilton, Anthony M D'Ippolito, Christopher M Vockley, Pratiksha I Thakore, Gregory E Crawford, Timothy E Reddy, Charles A Gersbach. Nat Biotechnol 2015
873
11

CRISPR-dCas9 mediated TET1 targeting for selective DNA demethylation at BRCA1 promoter.
Samrat Roy Choudhury, Yi Cui, Katarzyna Lubecka, Barbara Stefanska, Joseph Irudayaraj. Oncotarget 2016
135
11

Genetic analysis of DNA methylation and gene expression levels in whole blood of healthy human subjects.
Kristel R van Eijk, Simone de Jong, Marco P M Boks, Terry Langeveld, Fabrice Colas, Jan H Veldink, Carolien G F de Kovel, Esther Janson, Eric Strengman, Peter Langfelder,[...]. BMC Genomics 2012
139
11

Arsenic exposure and DNA methylation among elderly men.
Angeliki Lambrou, Andrea Baccarelli, Robert O Wright, Marc Weisskopf, Valentina Bollati, Chitra Amarasiriwardena, Pantel Vokonas, Joel Schwartz. Epidemiology 2012
51
11

Genetic and non-genetic predictors of LINE-1 methylation in leukocyte DNA.
Salman M Tajuddin, André F S Amaral, Agustín F Fernández, Sandra Rodríguez-Rodero, Ramón María Rodríguez, Lee E Moore, Adonina Tardón, Alfredo Carrato, Montserrat García-Closas, Debra T Silverman,[...]. Environ Health Perspect 2013
52
11

Genotoxic and epigenetic mechanisms in arsenic carcinogenicity.
Elisa Bustaffa, Andrea Stoccoro, Fabrizio Bianchi, Lucia Migliore. Arch Toxicol 2014
69
11

Telomeres in ICF syndrome cells are vulnerable to DNA damage due to elevated DNA:RNA hybrids.
Shira Sagie, Shir Toubiana, Stella R Hartono, Hagar Katzir, Aya Tzur-Gilat, Shany Havazelet, Claire Francastel, Guillaume Velasco, Frédéric Chédin, Sara Selig. Nat Commun 2017
52
11

Position effect at S. cerevisiae telomeres: reversible repression of Pol II transcription.
D E Gottschling, O M Aparicio, B L Billington, V A Zakian. Cell 1990
11

Aging stem cells. A Werner syndrome stem cell model unveils heterochromatin alterations as a driver of human aging.
Weiqi Zhang, Jingyi Li, Keiichiro Suzuki, Jing Qu, Ping Wang, Junzhi Zhou, Xiaomeng Liu, Ruotong Ren, Xiuling Xu, Alejandro Ocampo,[...]. Science 2015
258
11

Induced pluripotent stem cells as a model for telomeric abnormalities in ICF type I syndrome.
Shira Sagie, Erika Ellran, Hagar Katzir, Rony Shaked, Shiran Yehezkel, Ilana Laevsky, Alaa Ghanayim, Dan Geiger, Maty Tzukerman, Sara Selig. Hum Mol Genet 2014
21
11

Telomere length regulates TERRA levels through increased trimethylation of telomeric H3K9 and HP1α.
Nausica Arnoult, Amandine Van Beneden, Anabelle Decottignies. Nat Struct Mol Biol 2012
151
11

TERRA, CpG methylation and telomere heterochromatin: lessons from ICF syndrome cells.
Zhong Deng, Amy E Campbell, Paul M Lieberman. Cell Cycle 2010
64
11

Complex interactions between the DNA-damage response and mammalian telomeres.
Nausica Arnoult, Jan Karlseder. Nat Struct Mol Biol 2015
103
11

Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends.
Claus M Azzalin, Patrick Reichenbach, Lela Khoriauli, Elena Giulotto, Joachim Lingner. Science 2007
809
11

Mapping and analysis of chromatin state dynamics in nine human cell types.
Jason Ernst, Pouya Kheradpour, Tarjei S Mikkelsen, Noam Shoresh, Lucas D Ward, Charles B Epstein, Xiaolan Zhang, Li Wang, Robbyn Issner, Michael Coyne,[...]. Nature 2011
11

Hypomethylation of subtelomeric regions in ICF syndrome is associated with abnormally short telomeres and enhanced transcription from telomeric regions.
Shiran Yehezkel, Yardena Segev, Evani Viegas-Péquignot, Karl Skorecki, Sara Selig. Hum Mol Genet 2008
156
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.