A citation-based method for searching scientific literature

Thorold W Theunissen, Marc Friedli, Yupeng He, Evarist Planet, Ryan C O'Neil, Styliani Markoulaki, Julien Pontis, Haoyi Wang, Alexandra Iouranova, Michaël Imbeault, Julien Duc, Malkiel A Cohen, Katherine J Wert, Rosa Castanon, Zhuzhu Zhang, Yanmei Huang, Joseph R Nery, Jesse Drotar, Tenzin Lungjangwa, Didier Trono, Joseph R Ecker, Rudolf Jaenisch. Cell Stem Cell 2016
Times Cited: 258







List of co-cited articles
974 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Resetting transcription factor control circuitry toward ground-state pluripotency in human.
Yasuhiro Takashima, Ge Guo, Remco Loos, Jennifer Nichols, Gabriella Ficz, Felix Krueger, David Oxley, Fatima Santos, James Clarke, William Mansfield,[...]. Cell 2014
533
52

Naive and primed pluripotent states.
Jennifer Nichols, Austin Smith. Cell Stem Cell 2009
45

Derivation of novel human ground state naive pluripotent stem cells.
Ohad Gafni, Leehee Weinberger, Abed AlFatah Mansour, Yair S Manor, Elad Chomsky, Dalit Ben-Yosef, Yael Kalma, Sergey Viukov, Itay Maza, Asaf Zviran,[...]. Nature 2013
684
45

Systematic identification of culture conditions for induction and maintenance of naive human pluripotency.
Thorold W Theunissen, Benjamin E Powell, Haoyi Wang, Maya Mitalipova, Dina A Faddah, Jessica Reddy, Zi Peng Fan, Dorothea Maetzel, Kibibi Ganz, Linyu Shi,[...]. Cell Stem Cell 2014
470
43

Naive Pluripotent Stem Cells Derived Directly from Isolated Cells of the Human Inner Cell Mass.
Ge Guo, Ferdinand von Meyenn, Fatima Santos, Yaoyao Chen, Wolf Reik, Paul Bertone, Austin Smith, Jennifer Nichols. Stem Cell Reports 2016
203
31

Epigenetic resetting of human pluripotency.
Ge Guo, Ferdinand von Meyenn, Maria Rostovskaya, James Clarke, Sabine Dietmann, Duncan Baker, Anna Sahakyan, Samuel Myers, Paul Bertone, Wolf Reik,[...]. Development 2017
116
31

Embryonic stem cell lines derived from human blastocysts.
J A Thomson, J Itskovitz-Eldor, S S Shapiro, M A Waknitz, J J Swiergiel, V S Marshall, J M Jones. Science 1998
30

Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos.
Sophie Petropoulos, Daniel Edsgärd, Björn Reinius, Qiaolin Deng, Sarita Pauliina Panula, Simone Codeluppi, Alvaro Plaza Reyes, Sten Linnarsson, Rickard Sandberg, Fredrik Lanner. Cell 2016
392
28

New cell lines from mouse epiblast share defining features with human embryonic stem cells.
Paul J Tesar, Josh G Chenoweth, Frances A Brook, Timothy J Davies, Edward P Evans, David L Mack, Richard L Gardner, Ronald D G McKay. Nature 2007
28

Derivation of naive human embryonic stem cells.
Carol B Ware, Angelique M Nelson, Brigham Mecham, Jennifer Hesson, Wenyu Zhou, Erica C Jonlin, Antonio J Jimenez-Caliani, Xinxian Deng, Christopher Cavanaugh, Savannah Cook,[...]. Proc Natl Acad Sci U S A 2014
323
26

Human Naive Pluripotent Stem Cells Model X Chromosome Dampening and X Inactivation.
Anna Sahakyan, Rachel Kim, Constantinos Chronis, Shan Sabri, Giancarlo Bonora, Thorold W Theunissen, Edward Kuoy, Justin Langerman, Amander T Clark, Rudolf Jaenisch,[...]. Cell Stem Cell 2017
123
25

Induction of a human pluripotent state with distinct regulatory circuitry that resembles preimplantation epiblast.
Yun-Shen Chan, Jonathan Göke, Jia-Hui Ng, Xinyi Lu, Kevin Andrew Uy Gonzales, Cheng-Peow Tan, Wei-Quan Tng, Zhong-Zhi Hong, Yee-Siang Lim, Huck-Hui Ng. Cell Stem Cell 2013
274
25

Derivation of Pluripotent Stem Cells with In Vivo Embryonic and Extraembryonic Potency.
Yang Yang, Bei Liu, Jun Xu, Jinlin Wang, Jun Wu, Cheng Shi, Yaxing Xu, Jiebin Dong, Chengyan Wang, Weifeng Lai,[...]. Cell 2017
214
25

Derivation of pluripotent epiblast stem cells from mammalian embryos.
I Gabrielle M Brons, Lucy E Smithers, Matthew W B Trotter, Peter Rugg-Gunn, Bowen Sun, Susana M Chuva de Sousa Lopes, Sarah K Howlett, Amanda Clarkson, Lars Ahrlund-Richter, Roger A Pedersen,[...]. Nature 2007
25

A developmental coordinate of pluripotency among mice, monkeys and humans.
Tomonori Nakamura, Ikuhiro Okamoto, Kotaro Sasaki, Yukihiro Yabuta, Chizuru Iwatani, Hideaki Tsuchiya, Yasunari Seita, Shinichiro Nakamura, Takuya Yamamoto, Mitinori Saitou. Nature 2016
250
24

The ground state of embryonic stem cell self-renewal.
Qi-Long Ying, Jason Wray, Jennifer Nichols, Laura Batlle-Morera, Bradley Doble, James Woodgett, Philip Cohen, Austin Smith. Nature 2008
23

Naive Human Pluripotent Cells Feature a Methylation Landscape Devoid of Blastocyst or Germline Memory.
William A Pastor, Di Chen, Wanlu Liu, Rachel Kim, Anna Sahakyan, Anastasia Lukianchikov, Kathrin Plath, Steven E Jacobsen, Amander T Clark. Cell Stem Cell 2016
150
23

Interspecies Chimerism with Mammalian Pluripotent Stem Cells.
Jun Wu, Aida Platero-Luengo, Masahiro Sakurai, Atsushi Sugawara, Maria Antonia Gil, Takayoshi Yamauchi, Keiichiro Suzuki, Yanina Soledad Bogliotti, Cristina Cuello, Mariana Morales Valencia,[...]. Cell 2017
245
23

Human embryonic stem cells with biological and epigenetic characteristics similar to those of mouse ESCs.
Jacob Hanna, Albert W Cheng, Krishanu Saha, Jongpil Kim, Christopher J Lengner, Frank Soldner, John P Cassady, Julien Muffat, Bryce W Carey, Rudolf Jaenisch. Proc Natl Acad Sci U S A 2010
599
20

Integrated analysis of single-cell embryo data yields a unified transcriptome signature for the human pre-implantation epiblast.
Giuliano G Stirparo, Thorsten Boroviak, Ge Guo, Jennifer Nichols, Austin Smith, Paul Bertone. Development 2018
88
22

Dynamic stem cell states: naive to primed pluripotency in rodents and humans.
Leehee Weinberger, Muneef Ayyash, Noa Novershtern, Jacob H Hanna. Nat Rev Mol Cell Biol 2016
313
20

Capacitation of human naïve pluripotent stem cells for multi-lineage differentiation.
Maria Rostovskaya, Giuliano G Stirparo, Austin Smith. Development 2019
40
45

The Cell-Surface Marker Sushi Containing Domain 2 Facilitates Establishment of Human Naive Pluripotent Stem Cells.
Nicholas Bredenkamp, Giuliano Giuseppe Stirparo, Jennifer Nichols, Austin Smith, Ge Guo. Stem Cell Reports 2019
36
47

Hominoid-Specific Transposable Elements and KZFPs Facilitate Human Embryonic Genome Activation and Control Transcription in Naive Human ESCs.
Julien Pontis, Evarist Planet, Sandra Offner, Priscilla Turelli, Julien Duc, Alexandre Coudray, Thorold W Theunissen, Rudolf Jaenisch, Didier Trono. Cell Stem Cell 2019
83
20

Comprehensive Cell Surface Protein Profiling Identifies Specific Markers of Human Naive and Primed Pluripotent States.
Amanda J Collier, Sarita P Panula, John Paul Schell, Peter Chovanec, Alvaro Plaza Reyes, Sophie Petropoulos, Anne E Corcoran, Rachael Walker, Iyadh Douagi, Fredrik Lanner,[...]. Cell Stem Cell 2017
89
19

Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells.
Liying Yan, Mingyu Yang, Hongshan Guo, Lu Yang, Jun Wu, Rong Li, Ping Liu, Ying Lian, Xiaoying Zheng, Jie Yan,[...]. Nat Struct Mol Biol 2013
844
17

Derivation of trophoblast stem cells from naïve human pluripotent stem cells.
Chen Dong, Mariana Beltcheva, Paul Gontarz, Bo Zhang, Pooja Popli, Laura A Fischer, Shafqat A Khan, Kyoung-Mi Park, Eun-Ja Yoon, Xiaoyun Xing,[...]. Elife 2020
67
25

Establishment of porcine and human expanded potential stem cells.
Xuefei Gao, Monika Nowak-Imialek, Xi Chen, Dongsheng Chen, Doris Herrmann, Degong Ruan, Andy Chun Hang Chen, Melanie A Eckersley-Maslin, Shakil Ahmad, Yin Lau Lee,[...]. Nat Cell Biol 2019
118
16

Comprehensive characterization of distinct states of human naive pluripotency generated by reprogramming.
Xiaodong Liu, Christian M Nefzger, Fernando J Rossello, Joseph Chen, Anja S Knaupp, Jaber Firas, Ethan Ford, Jahnvi Pflueger, Jacob M Paynter, Hun S Chy,[...]. Nat Methods 2017
69
23


TFAP2C regulates transcription in human naive pluripotency by opening enhancers.
William A Pastor, Wanlu Liu, Di Chen, Jamie Ho, Rachel Kim, Timothy J Hunt, Anastasia Lukianchikov, Xiaodong Liu, Jose M Polo, Steven E Jacobsen,[...]. Nat Cell Biol 2018
63
23


Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
15

A developmental landscape of 3D-cultured human pre-gastrulation embryos.
Lifeng Xiang, Yu Yin, Yun Zheng, Yanping Ma, Yonggang Li, Zhigang Zhao, Junqiang Guo, Zongyong Ai, Yuyu Niu, Kui Duan,[...]. Nature 2020
95
15

Induction of pluripotent stem cells from adult human fibroblasts by defined factors.
Kazutoshi Takahashi, Koji Tanabe, Mari Ohnuki, Megumi Narita, Tomoko Ichisaka, Kiichiro Tomoda, Shinya Yamanaka. Cell 2007
14

Parallel derivation of isogenic human primed and naive induced pluripotent stem cells.
Stéphanie Kilens, Dimitri Meistermann, Diego Moreno, Caroline Chariau, Anne Gaignerie, Arnaud Reignier, Yohann Lelièvre, Miguel Casanova, Céline Vallot, Steven Nedellec,[...]. Nat Commun 2018
61
22

YAP Induces Human Naive Pluripotency.
Han Qin, Miroslav Hejna, Yanxia Liu, Michelle Percharde, Mark Wossidlo, Laure Blouin, Jens Durruthy-Durruthy, Priscilla Wong, Zhongxia Qi, Jingwei Yu,[...]. Cell Rep 2016
104
14

Generation of rat pancreas in mouse by interspecific blastocyst injection of pluripotent stem cells.
Toshihiro Kobayashi, Tomoyuki Yamaguchi, Sanae Hamanaka, Megumi Kato-Itoh, Yuji Yamazaki, Makoto Ibata, Hideyuki Sato, Youn-Su Lee, Jo-Ichi Usui, A S Knisely,[...]. Cell 2010
340
14


Self-organization of the in vitro attached human embryo.
Alessia Deglincerti, Gist F Croft, Lauren N Pietila, Magdalena Zernicka-Goetz, Eric D Siggia, Ali H Brivanlou. Nature 2016
329
13

Derivation of Human Trophoblast Stem Cells.
Hiroaki Okae, Hidehiro Toh, Tetsuya Sato, Hitoshi Hiura, Sota Takahashi, Kenjiro Shirane, Yuka Kabayama, Mikita Suyama, Hiroyuki Sasaki, Takahiro Arima. Cell Stem Cell 2018
243
13

Naïve human pluripotent stem cells respond to Wnt, Nodal and LIF signalling to produce expandable naïve extra-embryonic endoderm.
Madeleine Linneberg-Agerholm, Yan Fung Wong, Jose Alejandro Romero Herrera, Rita S Monteiro, Kathryn G V Anderson, Joshua M Brickman. Development 2019
49
26

Embryonic stem cell potency fluctuates with endogenous retrovirus activity.
Todd S Macfarlan, Wesley D Gifford, Shawn Driscoll, Karen Lettieri, Helen M Rowe, Dario Bonanomi, Amy Firth, Oded Singer, Didier Trono, Samuel L Pfaff. Nature 2012
588
13

Self-organization of the human embryo in the absence of maternal tissues.
Marta N Shahbazi, Agnieszka Jedrusik, Sanna Vuoristo, Gaelle Recher, Anna Hupalowska, Virginia Bolton, Norah N M Fogarty, Alison Campbell, Liani Devito, Dusko Ilic,[...]. Nat Cell Biol 2016
312
12

XACT Noncoding RNA Competes with XIST in the Control of X Chromosome Activity during Human Early Development.
Céline Vallot, Catherine Patrat, Amanda J Collier, Christophe Huret, Miguel Casanova, Tharvesh M Liyakat Ali, Matteo Tosolini, Nelly Frydman, Edith Heard, Peter J Rugg-Gunn,[...]. Cell Stem Cell 2017
99
12

Interspecies organogenesis generates autologous functional islets.
Tomoyuki Yamaguchi, Hideyuki Sato, Megumi Kato-Itoh, Teppei Goto, Hiromasa Hara, Makoto Sanbo, Naoaki Mizuno, Toshihiro Kobayashi, Ayaka Yanagida, Ayumi Umino,[...]. Nature 2017
146
12

Stem cells and interspecies chimaeras.
Jun Wu, Henry T Greely, Rudolf Jaenisch, Hiromitsu Nakauchi, Janet Rossant, Juan Carlos Izpisua Belmonte. Nature 2016
86
13


Establishment of mouse expanded potential stem cells.
Jian Yang, David J Ryan, Wei Wang, Jason Cheuk-Ho Tsang, Guocheng Lan, Hideki Masaki, Xuefei Gao, Liliana Antunes, Yong Yu, Zhexin Zhu,[...]. Nature 2017
117
12

Defining the three cell lineages of the human blastocyst by single-cell RNA-seq.
Paul Blakeley, Norah M E Fogarty, Ignacio del Valle, Sissy E Wamaitha, Tim Xiaoming Hu, Kay Elder, Philip Snell, Leila Christie, Paul Robson, Kathy K Niakan. Development 2015
198
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.