A citation-based method for searching scientific literature

Hunter R Underhill, Jacob O Kitzman, Sabine Hellwig, Noah C Welker, Riza Daza, Daniel N Baker, Keith M Gligorich, Robert C Rostomily, Mary P Bronner, Jay Shendure. PLoS Genet 2016
Times Cited: 296







List of co-cited articles
873 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Enhanced detection of circulating tumor DNA by fragment size analysis.
Florent Mouliere, Dineika Chandrananda, Anna M Piskorz, Elizabeth K Moore, James Morris, Lise Barlebo Ahlborn, Richard Mair, Teodora Goranova, Francesco Marass, Katrin Heider,[...]. Sci Transl Med 2018
273
51

Detection of circulating tumor DNA in early- and late-stage human malignancies.
Chetan Bettegowda, Mark Sausen, Rebecca J Leary, Isaac Kinde, Yuxuan Wang, Nishant Agrawal, Bjarne R Bartlett, Hao Wang, Brandon Luber, Rhoda M Alani,[...]. Sci Transl Med 2014
41

Cell-free DNA Comprises an In Vivo Nucleosome Footprint that Informs Its Tissues-Of-Origin.
Matthew W Snyder, Martin Kircher, Andrew J Hill, Riza M Daza, Jay Shendure. Cell 2016
530
35

Genome-wide cell-free DNA fragmentation in patients with cancer.
Stephen Cristiano, Alessandro Leal, Jillian Phallen, Jacob Fiksel, Vilmos Adleff, Daniel C Bruhm, Sarah Østrup Jensen, Jamie E Medina, Carolyn Hruban, James R White,[...]. Nature 2019
240
33

Lengthening and shortening of plasma DNA in hepatocellular carcinoma patients.
Peiyong Jiang, Carol W M Chan, K C Allen Chan, Suk Hang Cheng, John Wong, Vincent Wai-Sun Wong, Grace L H Wong, Stephen L Chan, Tony S K Mok, Henry L Y Chan,[...]. Proc Natl Acad Sci U S A 2015
329
32

An ultrasensitive method for quantitating circulating tumor DNA with broad patient coverage.
Aaron M Newman, Scott V Bratman, Jacqueline To, Jacob F Wynne, Neville C W Eclov, Leslie A Modlin, Chih Long Liu, Joel W Neal, Heather A Wakelee, Robert E Merritt,[...]. Nat Med 2014
29

Liquid biopsies come of age: towards implementation of circulating tumour DNA.
Jonathan C M Wan, Charles Massie, Javier Garcia-Corbacho, Florent Mouliere, James D Brenton, Carlos Caldas, Simon Pacey, Richard Baird, Nitzan Rosenfeld. Nat Rev Cancer 2017
965
29

High fragmentation characterizes tumour-derived circulating DNA.
Florent Mouliere, Bruno Robert, Erika Arnau Peyrotte, Maguy Del Rio, Marc Ychou, Franck Molina, Celine Gongora, Alain R Thierry. PLoS One 2011
283
28

Circulating mutant DNA to assess tumor dynamics.
Frank Diehl, Kerstin Schmidt, Michael A Choti, Katharine Romans, Steven Goodman, Meng Li, Katherine Thornton, Nishant Agrawal, Lori Sokoll, Steve A Szabo,[...]. Nat Med 2008
25

DNA fragments in the blood plasma of cancer patients: quantitations and evidence for their origin from apoptotic and necrotic cells.
S Jahr, H Hentze, S Englisch, D Hardt, F O Fackelmayer, R D Hesch, R Knippers. Cancer Res 2001
25

Direct detection of early-stage cancers using circulating tumor DNA.
Jillian Phallen, Mark Sausen, Vilmos Adleff, Alessandro Leal, Carolyn Hruban, James White, Valsamo Anagnostou, Jacob Fiksel, Stephen Cristiano, Eniko Papp,[...]. Sci Transl Med 2017
459
24

Noninvasive identification and monitoring of cancer mutations by targeted deep sequencing of plasma DNA.
Tim Forshew, Muhammed Murtaza, Christine Parkinson, Davina Gale, Dana W Y Tsui, Fiona Kaper, Sarah-Jane Dawson, Anna M Piskorz, Mercedes Jimenez-Linan, David Bentley,[...]. Sci Transl Med 2012
790
22

Integrated digital error suppression for improved detection of circulating tumor DNA.
Aaron M Newman, Alexander F Lovejoy, Daniel M Klass, David M Kurtz, Jacob J Chabon, Florian Scherer, Henning Stehr, Chih Long Liu, Scott V Bratman, Carmen Say,[...]. Nat Biotechnol 2016
495
20

Detection and localization of surgically resectable cancers with a multi-analyte blood test.
Joshua D Cohen, Lu Li, Yuxuan Wang, Christopher Thoburn, Bahman Afsari, Ludmila Danilova, Christopher Douville, Ammar A Javed, Fay Wong, Austin Mattox,[...]. Science 2018
967
19

Analysis of circulating tumor DNA to monitor metastatic breast cancer.
Sarah-Jane Dawson, Dana W Y Tsui, Muhammed Murtaza, Heather Biggs, Oscar M Rueda, Suet-Feung Chin, Mark J Dunning, Davina Gale, Tim Forshew, Betania Mahler-Araujo,[...]. N Engl J Med 2013
19

Current and future perspectives of liquid biopsies in genomics-driven oncology.
Ellen Heitzer, Imran S Haque, Charles E S Roberts, Michael R Speicher. Nat Rev Genet 2019
378
19

Nuclear Acids In Human Blood Plasma.
P MANDEL, P METAIS. C R Seances Soc Biol Fil 1948
542
19

Free DNA in the serum of cancer patients and the effect of therapy.
S A Leon, B Shapiro, D M Sklaroff, M J Yaros. Cancer Res 1977
18

Liquid biopsies: genotyping circulating tumor DNA.
Luis A Diaz, Alberto Bardelli. J Clin Oncol 2014
18

Origins, structures, and functions of circulating DNA in oncology.
A R Thierry, S El Messaoudi, P B Gahan, P Anker, M Stroun. Cancer Metastasis Rev 2016
310
17

Detection and quantification of mutations in the plasma of patients with colorectal tumors.
Frank Diehl, Meng Li, Devin Dressman, Yiping He, Dong Shen, Steve Szabo, Luis A Diaz, Steven N Goodman, Kerstin A David, Hartmut Juhl,[...]. Proc Natl Acad Sci U S A 2005
744
17

Phylogenetic ctDNA analysis depicts early-stage lung cancer evolution.
Christopher Abbosh, Nicolai J Birkbak, Gareth A Wilson, Mariam Jamal-Hanjani, Tudor Constantin, Raheleh Salari, John Le Quesne, David A Moore, Selvaraju Veeriah, Rachel Rosenthal,[...]. Nature 2017
675
17

Plasma DNA tissue mapping by genome-wide methylation sequencing for noninvasive prenatal, cancer, and transplantation assessments.
Kun Sun, Peiyong Jiang, K C Allen Chan, John Wong, Yvonne K Y Cheng, Raymond H S Liang, Wai-kong Chan, Edmond S K Ma, Stephen L Chan, Suk Hang Cheng,[...]. Proc Natl Acad Sci U S A 2015
315
17

Integrating liquid biopsies into the management of cancer.
Giulia Siravegna, Silvia Marsoni, Salvatore Siena, Alberto Bardelli. Nat Rev Clin Oncol 2017
795
17

Maternal plasma DNA sequencing reveals the genome-wide genetic and mutational profile of the fetus.
Y M Dennis Lo, K C Allen Chan, Hao Sun, Eric Z Chen, Peiyong Jiang, Fiona M F Lun, Yama W Zheng, Tak Y Leung, Tze K Lau, Charles R Cantor,[...]. Sci Transl Med 2010
587
16

Preferred end coordinates and somatic variants as signatures of circulating tumor DNA associated with hepatocellular carcinoma.
Peiyong Jiang, Kun Sun, Yu K Tong, Suk Hang Cheng, Timothy H T Cheng, Macy M S Heung, John Wong, Vincent W S Wong, Henry L Y Chan, K C Allen Chan,[...]. Proc Natl Acad Sci U S A 2018
57
28

Sensitive tumour detection and classification using plasma cell-free DNA methylomes.
Shu Yi Shen, Rajat Singhania, Gordon Fehringer, Ankur Chakravarthy, Michael H A Roehrl, Dianne Chadwick, Philip C Zuzarte, Ayelet Borgida, Ting Ting Wang, Tiantian Li,[...]. Nature 2018
263
16

Comprehensive human cell-type methylation atlas reveals origins of circulating cell-free DNA in health and disease.
Joshua Moss, Judith Magenheim, Daniel Neiman, Hai Zemmour, Netanel Loyfer, Amit Korach, Yaacov Samet, Myriam Maoz, Henrik Druid, Peter Arner,[...]. Nat Commun 2018
192
15

Application of Cell-free DNA Analysis to Cancer Treatment.
Ryan B Corcoran, Bruce A Chabner. N Engl J Med 2018
287
14

Scalable whole-exome sequencing of cell-free DNA reveals high concordance with metastatic tumors.
Viktor A Adalsteinsson, Gavin Ha, Samuel S Freeman, Atish D Choudhury, Daniel G Stover, Heather A Parsons, Gregory Gydush, Sarah C Reed, Denisse Rotem, Justin Rhoades,[...]. Nat Commun 2017
256
14

Detection and quantification of rare mutations with massively parallel sequencing.
Isaac Kinde, Jian Wu, Nick Papadopoulos, Kenneth W Kinzler, Bert Vogelstein. Proc Natl Acad Sci U S A 2011
692
14

Inferring expressed genes by whole-genome sequencing of plasma DNA.
Peter Ulz, Gerhard G Thallinger, Martina Auer, Ricarda Graf, Karl Kashofer, Stephan W Jahn, Luca Abete, Gunda Pristauz, Edgar Petru, Jochen B Geigl,[...]. Nat Genet 2016
136
14

Orientation-aware plasma cell-free DNA fragmentation analysis in open chromatin regions informs tissue of origin.
Kun Sun, Peiyong Jiang, Suk Hang Cheng, Timothy H T Cheng, John Wong, Vincent W S Wong, Simon S M Ng, Brigette B Y Ma, Tak Y Leung, Stephen L Chan,[...]. Genome Res 2019
67
20

Non-invasive analysis of acquired resistance to cancer therapy by sequencing of plasma DNA.
Muhammed Murtaza, Sarah-Jane Dawson, Dana W Y Tsui, Davina Gale, Tim Forshew, Anna M Piskorz, Christine Parkinson, Suet-Feung Chin, Zoya Kingsbury, Alvin S C Wong,[...]. Nature 2013
13

Presence of fetal DNA in maternal plasma and serum.
Y M Lo, N Corbetta, P F Chamberlain, V Rai, I L Sargent, C W Redman, J S Wainscoat. Lancet 1997
13

Detection of cell-free DNA fragmentation and copy number alterations in cerebrospinal fluid from glioma patients.
Florent Mouliere, Richard Mair, Dineika Chandrananda, Francesco Marass, Christopher G Smith, Jing Su, James Morris, Colin Watts, Kevin M Brindle, Nitzan Rosenfeld. EMBO Mol Med 2018
60
21

Size-tagged preferred ends in maternal plasma DNA shed light on the production mechanism and show utility in noninvasive prenatal testing.
Kun Sun, Peiyong Jiang, Ada I C Wong, Yvonne K Y Cheng, Suk Hang Cheng, Haiqiang Zhang, K C Allen Chan, Tak Y Leung, Rossa W K Chiu, Y M Dennis Lo. Proc Natl Acad Sci U S A 2018
59
22

Cell-free nucleic acids as biomarkers in cancer patients.
Heidi Schwarzenbach, Dave S B Hoon, Klaus Pantel. Nat Rev Cancer 2011
12

Non-random fragmentation patterns in circulating cell-free DNA reflect epigenetic regulation.
Maxim Ivanov, Ancha Baranova, Timothy Butler, Paul Spellman, Vladislav Mileyko. BMC Genomics 2015
54
22

Identification of tissue-specific cell death using methylation patterns of circulating DNA.
Roni Lehmann-Werman, Daniel Neiman, Hai Zemmour, Joshua Moss, Judith Magenheim, Adi Vaknin-Dembinsky, Sten Rubertsson, Bengt Nellgård, Kaj Blennow, Henrik Zetterberg,[...]. Proc Natl Acad Sci U S A 2016
280
12

Automated size selection for short cell-free DNA fragments enriches for circulating tumor DNA and improves error correction during next generation sequencing.
Sabine Hellwig, David A Nix, Keith M Gligorich, John M O'Shea, Alun Thomas, Carrie L Fuertes, Preetida J Bhetariya, Gabor T Marth, Mary P Bronner, Hunter R Underhill. PLoS One 2018
32
37

Cerebrospinal fluid-derived circulating tumour DNA better represents the genomic alterations of brain tumours than plasma.
Leticia De Mattos-Arruda, Regina Mayor, Charlotte K Y Ng, Britta Weigelt, Francisco Martínez-Ricarte, Davis Torrejon, Mafalda Oliveira, Alexandra Arias, Carolina Raventos, Jiabin Tang,[...]. Nat Commun 2015
346
12

Circulating tumor DNA analysis detects minimal residual disease and predicts recurrence in patients with stage II colon cancer.
Jeanne Tie, Yuxuan Wang, Cristian Tomasetti, Lu Li, Simeon Springer, Isaac Kinde, Natalie Silliman, Mark Tacey, Hui-Li Wong, Michael Christie,[...]. Sci Transl Med 2016
595
11

Single-stranded DNA library preparation uncovers the origin and diversity of ultrashort cell-free DNA in plasma.
Philip Burnham, Min Seong Kim, Sean Agbor-Enoh, Helen Luikart, Hannah A Valantine, Kiran K Khush, Iwijn De Vlaminck. Sci Rep 2016
90
12

Detection of tumor-derived DNA in cerebrospinal fluid of patients with primary tumors of the brain and spinal cord.
Yuxuan Wang, Simeon Springer, Ming Zhang, K Wyatt McMahon, Isaac Kinde, Lisa Dobbyn, Janine Ptak, Henry Brem, Kaisorn Chaichana, Gary L Gallia,[...]. Proc Natl Acad Sci U S A 2015
187
10

Fragment size and level of cell-free DNA provide prognostic information in patients with advanced pancreatic cancer.
Morten Lapin, Satu Oltedal, Kjersti Tjensvoll, Tove Buhl, Rune Smaaland, Herish Garresori, Milind Javle, Nils Idar Glenjen, Bente Kristin Abelseth, Bjørnar Gilje,[...]. J Transl Med 2018
49
20

Nonhematopoietically derived DNA is shorter than hematopoietically derived DNA in plasma: a transplantation model.
Yama W L Zheng, K C Allen Chan, Hao Sun, Peiyong Jiang, Xiaoxi Su, Eric Z Chen, Fiona M F Lun, Emily C W Hung, Vincent Lee, John Wong,[...]. Clin Chem 2012
73
13

The Landscape of Actionable Genomic Alterations in Cell-Free Circulating Tumor DNA from 21,807 Advanced Cancer Patients.
Oliver A Zill, Kimberly C Banks, Stephen R Fairclough, Stefanie A Mortimer, James V Vowles, Reza Mokhtari, David R Gandara, Philip C Mack, Justin I Odegaard, Rebecca J Nagy,[...]. Clin Cancer Res 2018
140
10

New insights into structural features and optimal detection of circulating tumor DNA determined by single-strand DNA analysis.
Cynthia Sanchez, Matthew W Snyder, Rita Tanos, Jay Shendure, Alain R Thierry. NPJ Genom Med 2018
39
25



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.