A citation-based method for searching scientific literature

Mingming Sun, Wei Wu, Zhanju Liu, Yingzi Cong. J Gastroenterol 2017
Times Cited: 401







List of co-cited articles
1008 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


From Dietary Fiber to Host Physiology: Short-Chain Fatty Acids as Key Bacterial Metabolites.
Ara Koh, Filipe De Vadder, Petia Kovatcheva-Datchary, Fredrik Bäckhed. Cell 2016
23

Short Chain Fatty Acids (SCFAs)-Mediated Gut Epithelial and Immune Regulation and Its Relevance for Inflammatory Bowel Diseases.
Daniela Parada Venegas, Marjorie K De la Fuente, Glauben Landskron, María Julieta González, Rodrigo Quera, Gerard Dijkstra, Hermie J M Harmsen, Klaas Nico Faber, Marcela A Hermoso. Front Immunol 2019
18

Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells.
Yukihiro Furusawa, Yuuki Obata, Shinji Fukuda, Takaho A Endo, Gaku Nakato, Daisuke Takahashi, Yumiko Nakanishi, Chikako Uetake, Keiko Kato, Tamotsu Kato,[...]. Nature 2013
15

The role of short-chain fatty acids in health and disease.
Jian Tan, Craig McKenzie, Maria Potamitis, Alison N Thorburn, Charles R Mackay, Laurence Macia. Adv Immunol 2014
997
13

The microbial metabolites, short-chain fatty acids, regulate colonic Treg cell homeostasis.
Patrick M Smith, Michael R Howitt, Nicolai Panikov, Monia Michaud, Carey Ann Gallini, Mohammad Bohlooly-Y, Jonathan N Glickman, Wendy S Garrett. Science 2013
13

Gut microbiota-derived metabolites as key actors in inflammatory bowel disease.
Aonghus Lavelle, Harry Sokol. Nat Rev Gastroenterol Hepatol 2020
442
13

Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation.
Nicholas Arpaia, Clarissa Campbell, Xiying Fan, Stanislav Dikiy, Joris van der Veeken, Paul deRoos, Hui Liu, Justin R Cross, Klaus Pfeffer, Paul J Coffer,[...]. Nature 2013
12

Activation of Gpr109a, receptor for niacin and the commensal metabolite butyrate, suppresses colonic inflammation and carcinogenesis.
Nagendra Singh, Ashish Gurav, Sathish Sivaprakasam, Evan Brady, Ravi Padia, Huidong Shi, Muthusamy Thangaraju, Puttur D Prasad, Santhakumar Manicassamy, David H Munn,[...]. Immunity 2014
11

Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43.
Kendle M Maslowski, Angelica T Vieira, Aylwin Ng, Jan Kranich, Frederic Sierro, Di Yu, Heidi C Schilter, Michael S Rolph, Fabienne Mackay, David Artis,[...]. Nature 2009
11

Metabolite-sensing receptors GPR43 and GPR109A facilitate dietary fibre-induced gut homeostasis through regulation of the inflammasome.
Laurence Macia, Jian Tan, Angelica T Vieira, Katie Leach, Dragana Stanley, Suzanne Luong, Mikako Maruya, Craig Ian McKenzie, Atsushi Hijikata, Connie Wong,[...]. Nat Commun 2015
677
11

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases.
Jason Lloyd-Price, Cesar Arze, Ashwin N Ananthakrishnan, Melanie Schirmer, Julian Avila-Pacheco, Tiffany W Poon, Elizabeth Andrews, Nadim J Ajami, Kevin S Bonham, Colin J Brislawn,[...]. Nature 2019
900
11

Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota.
Koji Atarashi, Takeshi Tanoue, Kenshiro Oshima, Wataru Suda, Yuji Nagano, Hiroyoshi Nishikawa, Shinji Fukuda, Takuro Saito, Seiko Narushima, Koji Hase,[...]. Nature 2013
10

The microbial metabolite butyrate regulates intestinal macrophage function via histone deacetylase inhibition.
Pamela V Chang, Liming Hao, Stefan Offermanns, Ruslan Medzhitov. Proc Natl Acad Sci U S A 2014
9

Gut microbiome structure and metabolic activity in inflammatory bowel disease.
Eric A Franzosa, Alexandra Sirota-Madi, Julian Avila-Pacheco, Nadine Fornelos, Henry J Haiser, Stefan Reinker, Tommi Vatanen, A Brantley Hall, Himel Mallick, Lauren J McIver,[...]. Nat Microbiol 2019
585
9

Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients.
Harry Sokol, Bénédicte Pigneur, Laurie Watterlot, Omar Lakhdari, Luis G Bermúdez-Humarán, Jean-Jacques Gratadoux, Sébastien Blugeon, Chantal Bridonneau, Jean-Pierre Furet, Gérard Corthier,[...]. Proc Natl Acad Sci U S A 2008
9

Gut microbiota and IBD: causation or correlation?
Josephine Ni, Gary D Wu, Lindsey Albenberg, Vesselin T Tomov. Nat Rev Gastroenterol Hepatol 2017
675
9

Bile acid-microbiota crosstalk in gastrointestinal inflammation and carcinogenesis.
Wei Jia, Guoxiang Xie, Weiping Jia. Nat Rev Gastroenterol Hepatol 2018
636
8

Tryptophan catabolites from microbiota engage aryl hydrocarbon receptor and balance mucosal reactivity via interleukin-22.
Teresa Zelante, Rossana G Iannitti, Cristina Cunha, Antonella De Luca, Gloria Giovannini, Giuseppe Pieraccini, Riccardo Zecchi, Carmen D'Angelo, Cristina Massi-Benedetti, Francesca Fallarino,[...]. Immunity 2013
8

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases.
Daniel N Frank, Allison L St Amand, Robert A Feldman, Edgar C Boedeker, Noam Harpaz, Norman R Pace. Proc Natl Acad Sci U S A 2007
8

The gut microbiota, bacterial metabolites and colorectal cancer.
Petra Louis, Georgina L Hold, Harry J Flint. Nat Rev Microbiol 2014
8

GPR43 mediates microbiota metabolite SCFA regulation of antimicrobial peptide expression in intestinal epithelial cells via activation of mTOR and STAT3.
Ye Zhao, Feidi Chen, Wei Wu, Mingming Sun, Anthony J Bilotta, Suxia Yao, Yi Xiao, Xiangsheng Huang, Tonyia D Eaves-Pyles, George Golovko,[...]. Mucosal Immunol 2018
192
8

Short chain fatty acids in human large intestine, portal, hepatic and venous blood.
J H Cummings, E W Pomare, W J Branch, C P Naylor, G T Macfarlane. Gut 1987
8

The role of short-chain fatty acids in microbiota-gut-brain communication.
Boushra Dalile, Lukas Van Oudenhove, Bram Vervliet, Kristin Verbeke. Nat Rev Gastroenterol Hepatol 2019
748
8

Formation of propionate and butyrate by the human colonic microbiota.
Petra Louis, Harry J Flint. Environ Microbiol 2017
904
8

Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity.
Amandine Everard, Clara Belzer, Lucie Geurts, Janneke P Ouwerkerk, Céline Druart, Laure B Bindels, Yves Guiot, Muriel Derrien, Giulio G Muccioli, Nathalie M Delzenne,[...]. Proc Natl Acad Sci U S A 2013
7

An obesity-associated gut microbiome with increased capacity for energy harvest.
Peter J Turnbaugh, Ruth E Ley, Michael A Mahowald, Vincent Magrini, Elaine R Mardis, Jeffrey I Gordon. Nature 2006
7

Bile acid metabolites control TH17 and Treg cell differentiation.
Saiyu Hang, Donggi Paik, Lina Yao, Eunha Kim, Jamma Trinath, Jingping Lu, Soyoung Ha, Brandon N Nelson, Samantha P Kelly, Lin Wu,[...]. Nature 2019
369
7

Microbial bile acid metabolites modulate gut RORγ+ regulatory T cell homeostasis.
Xinyang Song, Ximei Sun, Sungwhan F Oh, Meng Wu, Yanbo Zhang, Wen Zheng, Naama Geva-Zatorsky, Ray Jupp, Diane Mathis, Christophe Benoist,[...]. Nature 2020
329
7

CARD9 impacts colitis by altering gut microbiota metabolism of tryptophan into aryl hydrocarbon receptor ligands.
Bruno Lamas, Mathias L Richard, Valentin Leducq, Hang-Phuong Pham, Marie-Laure Michel, Gregory Da Costa, Chantal Bridonneau, Sarah Jegou, Thomas W Hoffmann, Jane M Natividad,[...]. Nat Med 2016
687
7

Gut Microbiota Regulation of Tryptophan Metabolism in Health and Disease.
Allison Agus, Julien Planchais, Harry Sokol. Cell Host Microbe 2018
807
7

Gut Microbial Metabolites Fuel Host Antibody Responses.
Myunghoo Kim, Yaqing Qie, Jeongho Park, Chang H Kim. Cell Host Microbe 2016
373
7

Suppressive effect of short-chain fatty acids on production of proinflammatory mediators by neutrophils.
Marco A R Vinolo, Hosana G Rodrigues, Elaine Hatanaka, Fábio T Sato, Sandra C Sampaio, Rui Curi. J Nutr Biochem 2011
358
7

Microbiota-derived short-chain fatty acids promote Th1 cell IL-10 production to maintain intestinal homeostasis.
Mingming Sun, Wei Wu, Liang Chen, Wenjing Yang, Xiangsheng Huang, Caiyun Ma, Feidi Chen, Yi Xiao, Ye Zhao, Chunyan Ma,[...]. Nat Commun 2018
223
7

Connecting dysbiosis, bile-acid dysmetabolism and gut inflammation in inflammatory bowel diseases.
Henri Duboc, Sylvie Rajca, Dominique Rainteau, David Benarous, Marie-Anne Maubert, Elodie Quervain, Ginette Thomas, Véronique Barbu, Lydie Humbert, Guillaume Despras,[...]. Gut 2013
456
7

A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis.
Kathleen Machiels, Marie Joossens, João Sabino, Vicky De Preter, Ingrid Arijs, Venessa Eeckhaut, Vera Ballet, Karolien Claes, Filip Van Immerseel, Kristin Verbeke,[...]. Gut 2014
924
7

Microbiota metabolite short-chain fatty acid acetate promotes intestinal IgA response to microbiota which is mediated by GPR43.
W Wu, M Sun, F Chen, A T Cao, H Liu, Y Zhao, X Huang, Y Xiao, S Yao, Q Zhao,[...]. Mucosal Immunol 2017
218
7

Short chain fatty acids and its producing organisms: An overlooked therapy for IBD?
Sara Deleu, Kathleen Machiels, Jeroen Raes, Kristin Verbeke, Séverine Vermeire. EBioMedicine 2021
84
8

Linking long-term dietary patterns with gut microbial enterotypes.
Gary D Wu, Jun Chen, Christian Hoffmann, Kyle Bittinger, Ying-Yu Chen, Sue A Keilbaugh, Meenakshi Bewtra, Dan Knights, William A Walters, Rob Knight,[...]. Science 2011
7

Intestinal microbiota-derived short-chain fatty acids regulation of immune cell IL-22 production and gut immunity.
Wenjing Yang, Tianming Yu, Xiangsheng Huang, Anthony J Bilotta, Leiqi Xu, Yao Lu, Jiaren Sun, Fan Pan, Jia Zhou, Wenbo Zhang,[...]. Nat Commun 2020
214
7

Salt-responsive gut commensal modulates TH17 axis and disease.
Nicola Wilck, Mariana G Matus, Sean M Kearney, Scott W Olesen, Kristoffer Forslund, Hendrik Bartolomaeus, Stefanie Haase, Anja Mähler, András Balogh, Lajos Markó,[...]. Nature 2017
601
6

Diet rapidly and reproducibly alters the human gut microbiome.
Lawrence A David, Corinne F Maurice, Rachel N Carmody, David B Gootenberg, Julie E Button, Benjamin E Wolfe, Alisha V Ling, A Sloan Devlin, Yug Varma, Michael A Fischbach,[...]. Nature 2014
6

Expert consensus document: The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of prebiotics.
Glenn R Gibson, Robert Hutkins, Mary Ellen Sanders, Susan L Prescott, Raylene A Reimer, Seppo J Salminen, Karen Scott, Catherine Stanton, Kelly S Swanson, Patrice D Cani,[...]. Nat Rev Gastroenterol Hepatol 2017
6

Probiotics and prebiotics in intestinal health and disease: from biology to the clinic.
Mary Ellen Sanders, Daniel J Merenstein, Gregor Reid, Glenn R Gibson, Robert A Rastall. Nat Rev Gastroenterol Hepatol 2019
449
6

Dysbiosis-Induced Secondary Bile Acid Deficiency Promotes Intestinal Inflammation.
Sidhartha R Sinha, Yeneneh Haileselassie, Linh P Nguyen, Carolina Tropini, Min Wang, Laren S Becker, Davis Sim, Karolin Jarr, Estelle T Spear, Gulshan Singh,[...]. Cell Host Microbe 2020
198
6

Gut microbiota, metabolites and host immunity.
Michelle G Rooks, Wendy S Garrett. Nat Rev Immunol 2016
6

A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites.
Dylan Dodd, Matthew H Spitzer, William Van Treuren, Bryan D Merrill, Andrew J Hryckowian, Steven K Higginbottom, Anthony Le, Tina M Cowan, Garry P Nolan, Michael A Fischbach,[...]. Nature 2017
464
6

The Orphan G protein-coupled receptors GPR41 and GPR43 are activated by propionate and other short chain carboxylic acids.
Andrew J Brown, Susan M Goldsworthy, Ashley A Barnes, Michelle M Eilert, Lili Tcheang, Dion Daniels, Alison I Muir, Mark J Wigglesworth, Ian Kinghorn, Neil J Fraser,[...]. J Biol Chem 2003
6

Regulation of immune cell function by short-chain fatty acids.
Renan Corrêa-Oliveira, José Luís Fachi, Aline Vieira, Fabio Takeo Sato, Marco Aurélio R Vinolo. Clin Transl Immunology 2016
551
6

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment.
Xochitl C Morgan, Timothy L Tickle, Harry Sokol, Dirk Gevers, Kathryn L Devaney, Doyle V Ward, Joshua A Reyes, Samir A Shah, Neal LeLeiko, Scott B Snapper,[...]. Genome Biol 2012
6

ACE2 links amino acid malnutrition to microbial ecology and intestinal inflammation.
Tatsuo Hashimoto, Thomas Perlot, Ateequr Rehman, Jean Trichereau, Hiroaki Ishiguro, Magdalena Paolino, Verena Sigl, Toshikatsu Hanada, Reiko Hanada, Simone Lipinski,[...]. Nature 2012
730
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.