A citation-based method for searching scientific literature

Lori Buetow, Danny T Huang. Nat Rev Mol Cell Biol 2016
Times Cited: 263







List of co-cited articles
1054 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Ubiquitin Ligases: Structure, Function, and Regulation.
Ning Zheng, Nitzan Shabek. Annu Rev Biochem 2017
533
26

The ubiquitin code.
David Komander, Michael Rape. Annu Rev Biochem 2012
25

Ubiquitin modifications.
Kirby N Swatek, David Komander. Cell Res 2016
825
16

RING-type E3 ligases: master manipulators of E2 ubiquitin-conjugating enzymes and ubiquitination.
Meredith B Metzger, Jonathan N Pruneda, Rachel E Klevit, Allan M Weissman. Biochim Biophys Acta 2014
353
14

RING domain E3 ubiquitin ligases.
Raymond J Deshaies, Claudio A P Joazeiro. Annu Rev Biochem 2009
14

E2 enzymes: more than just middle men.
Mikaela D Stewart, Tobias Ritterhoff, Rachel E Klevit, Peter S Brzovic. Cell Res 2016
243
14

The increasing complexity of the ubiquitin code.
Richard Yau, Michael Rape. Nat Cell Biol 2016
526
13

Ubiquitination in disease pathogenesis and treatment.
Doris Popovic, Domagoj Vucic, Ivan Dikic. Nat Med 2014
528
12

The ubiquitin system.
A Hershko, A Ciechanover. Annu Rev Biochem 1998
11

Physiological functions of the HECT family of ubiquitin ligases.
Daniela Rotin, Sharad Kumar. Nat Rev Mol Cell Biol 2009
726
11

New insights into ubiquitin E3 ligase mechanism.
Christopher E Berndsen, Cynthia Wolberger. Nat Struct Mol Biol 2014
367
11


Ubiquitin ligases in oncogenic transformation and cancer therapy.
Daniela Senft, Jianfei Qi, Ze'ev A Ronai. Nat Rev Cancer 2018
207
10


Breaking the chains: deubiquitylating enzyme specificity begets function.
Michael J Clague, Sylvie Urbé, David Komander. Nat Rev Mol Cell Biol 2019
266
9

Building ubiquitin chains: E2 enzymes at work.
Yihong Ye, Michael Rape. Nat Rev Mol Cell Biol 2009
646
9

Regulation and cellular roles of ubiquitin-specific deubiquitinating enzymes.
Francisca E Reyes-Turcu, Karen H Ventii, Keith D Wilkinson. Annu Rev Biochem 2009
982
9

Ubiquitin chain diversity at a glance.
Masato Akutsu, Ivan Dikic, Anja Bremm. J Cell Sci 2016
266
8

The Ubiquitin Code in the Ubiquitin-Proteasome System and Autophagy.
Yong Tae Kwon, Aaron Ciechanover. Trends Biochem Sci 2017
321
8

Structure of a RING E3 ligase and ubiquitin-loaded E2 primed for catalysis.
Anna Plechanovová, Ellis G Jaffray, Michael H Tatham, James H Naismith, Ronald T Hay. Nature 2012
345
8

BIRC7-E2 ubiquitin conjugate structure reveals the mechanism of ubiquitin transfer by a RING dimer.
Hao Dou, Lori Buetow, Gary J Sibbet, Kenneth Cameron, Danny T Huang. Nat Struct Mol Biol 2012
227
8

UBCH7 reactivity profile reveals parkin and HHARI to be RING/HECT hybrids.
Dawn M Wenzel, Alexei Lissounov, Peter S Brzovic, Rachel E Klevit. Nature 2011
359
8

Proteasomal and Autophagic Degradation Systems.
Ivan Dikic. Annu Rev Biochem 2017
497
8

Mechanisms of Deubiquitinase Specificity and Regulation.
Tycho E T Mevissen, David Komander. Annu Rev Biochem 2017
439
8

Function and regulation of cullin-RING ubiquitin ligases.
Matthew D Petroski, Raymond J Deshaies. Nat Rev Mol Cell Biol 2005
8

Types of Ubiquitin Ligases.
Francesca Ester Morreale, Helen Walden. Cell 2016
172
8

The Logic of the 26S Proteasome.
Galen Andrew Collins, Alfred L Goldberg. Cell 2017
409
7

Assembly and Function of Heterotypic Ubiquitin Chains in Cell-Cycle and Protein Quality Control.
Richard G Yau, Kerstin Doerner, Erick R Castellanos, Diane L Haakonsen, Achim Werner, Nan Wang, X William Yang, Nadia Martinez-Martin, Marissa L Matsumoto, Vishva M Dixit,[...]. Cell 2017
152
7

Structure of an E3:E2~Ub complex reveals an allosteric mechanism shared among RING/U-box ligases.
Jonathan N Pruneda, Peter J Littlefield, Sarah E Soss, Kyle A Nordquist, Walter J Chazin, Peter S Brzovic, Rachel E Klevit. Mol Cell 2012
216
7


Protacs: chimeric molecules that target proteins to the Skp1-Cullin-F box complex for ubiquitination and degradation.
K M Sakamoto, K B Kim, A Kumagai, F Mercurio, C M Crews, R J Deshaies. Proc Natl Acad Sci U S A 2001
791
7

Systematic and quantitative assessment of the ubiquitin-modified proteome.
Woong Kim, Eric J Bennett, Edward L Huttlin, Ailan Guo, Jing Li, Anthony Possemato, Mathew E Sowa, Ramin Rad, John Rush, Michael J Comb,[...]. Mol Cell 2011
7

Principles of Ubiquitin-Dependent Signaling.
Eugene Oh, David Akopian, Michael Rape. Annu Rev Cell Dev Biol 2018
131
7

A ubiquitin ligase complex assembles linear polyubiquitin chains.
Takayoshi Kirisako, Kiyoko Kamei, Shigeo Murata, Michiko Kato, Hiromi Fukumoto, Masato Kanie, Soichi Sano, Fuminori Tokunaga, Keiji Tanaka, Kazuhiro Iwai. EMBO J 2006
533
7

A genomic and functional inventory of deubiquitinating enzymes.
Sebastian M B Nijman, Mark P A Luna-Vargas, Arno Velds, Thijn R Brummelkamp, Annette M G Dirac, Titia K Sixma, René Bernards. Cell 2005
6

U box proteins as a new family of ubiquitin-protein ligases.
S Hatakeyama, M Yada, M Matsumoto, N Ishida, K I Nakayama. J Biol Chem 2001
430
6

Structure of the DDB1-CRBN E3 ubiquitin ligase in complex with thalidomide.
Eric S Fischer, Kerstin Böhm, John R Lydeard, Haidi Yang, Michael B Stadler, Simone Cavadini, Jane Nagel, Fabrizio Serluca, Vincent Acker, Gondichatnahalli M Lingaraju,[...]. Nature 2014
479
6

Lenalidomide causes selective degradation of IKZF1 and IKZF3 in multiple myeloma cells.
Jan Krönke, Namrata D Udeshi, Anupama Narla, Peter Grauman, Slater N Hurst, Marie McConkey, Tanya Svinkina, Dirk Heckl, Eamon Comer, Xiaoyu Li,[...]. Science 2014
937
6

Targeted protein degradation: expanding the toolbox.
Matthieu Schapira, Matthew F Calabrese, Alex N Bullock, Craig M Crews. Nat Rev Drug Discov 2019
287
6

K29-selective ubiquitin binding domain reveals structural basis of specificity and heterotypic nature of k29 polyubiquitin.
Yosua Adi Kristariyanto, Syed Arif Abdul Rehman, David G Campbell, Nicholas A Morrice, Clare Johnson, Rachel Toth, Yogesh Kulathu. Mol Cell 2015
102
6

Breaking the chains: structure and function of the deubiquitinases.
David Komander, Michael J Clague, Sylvie Urbé. Nat Rev Mol Cell Biol 2009
6

Enhanced protein degradation by branched ubiquitin chains.
Hermann-Josef Meyer, Michael Rape. Cell 2014
285
6

Activity-based E3 ligase profiling uncovers an E3 ligase with esterification activity.
Kuan-Chuan Pao, Nicola T Wood, Axel Knebel, Karim Rafie, Mathew Stanley, Peter D Mabbitt, Ramasubramanian Sundaramoorthy, Kay Hofmann, Daan M F van Aalten, Satpal Virdee. Nature 2018
102
6

RING-Between-RING E3 Ligases: Emerging Themes amid the Variations.
Katja K Dove, Rachel E Klevit. J Mol Biol 2017
73
8

RBR E3 ubiquitin ligases: new structures, new insights, new questions.
Donald E Spratt, Helen Walden, Gary S Shaw. Biochem J 2014
161
6

RINGs hold the key to ubiquitin transfer.
Rhesa Budhidarmo, Yoshio Nakatani, Catherine L Day. Trends Biochem Sci 2012
129
6

HECT E3 Ligases: A Tale With Multiple Facets.
Janine Weber, Simona Polo, Elena Maspero. Front Physiol 2019
52
11

Building and remodelling Cullin-RING E3 ubiquitin ligases.
John R Lydeard, Brenda A Schulman, J Wade Harper. EMBO Rep 2013
213
6

RBR ligase-mediated ubiquitin transfer: a tale with many twists and turns.
Helen Walden, Katrin Rittinger. Nat Struct Mol Biol 2018
57
10

A Comprehensive Atlas of E3 Ubiquitin Ligase Mutations in Neurological Disorders.
Arlene J George, Yarely C Hoffiz, Antoinette J Charles, Ying Zhu, Angela M Mabb. Front Genet 2018
70
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.