Kristina Gervin, Christian Magnus Page, Hans Christian D Aass, Michelle A Jansen, Heidi Elisabeth Fjeldstad, Bettina Kulle Andreassen, Liesbeth Duijts, Joyce B van Meurs, Menno C van Zelm, Vincent W Jaddoe, Hedvig Nordeng, Gunn Peggy Knudsen, Per Magnus, Wenche Nystad, Anne Cathrine Staff, Janine F Felix, Robert Lyle. Epigenetics 2016
Times Cited: 45
Times Cited: 45
Times Cited
Times Co-cited
Similarity
DNA methylation arrays as surrogate measures of cell mixture distribution.
Eugene Andres Houseman, William P Accomando, Devin C Koestler, Brock C Christensen, Carmen J Marsit, Heather H Nelson, John K Wiencke, Karl T Kelsey. BMC Bioinformatics 2012
Eugene Andres Houseman, William P Accomando, Devin C Koestler, Brock C Christensen, Carmen J Marsit, Heather H Nelson, John K Wiencke, Karl T Kelsey. BMC Bioinformatics 2012
68
DNA methylation of cord blood cell types: Applications for mixed cell birth studies.
Kelly M Bakulski, Jason I Feinberg, Shan V Andrews, Jack Yang, Shannon Brown, Stephanie L McKenney, Frank Witter, Jeremy Walston, Andrew P Feinberg, M Daniele Fallin. Epigenetics 2016
Kelly M Bakulski, Jason I Feinberg, Shan V Andrews, Jack Yang, Shannon Brown, Stephanie L McKenney, Frank Witter, Jeremy Walston, Andrew P Feinberg, M Daniele Fallin. Epigenetics 2016
60
Differential DNA methylation in purified human blood cells: implications for cell lineage and studies on disease susceptibility.
Lovisa E Reinius, Nathalie Acevedo, Maaike Joerink, Göran Pershagen, Sven-Erik Dahlén, Dario Greco, Cilla Söderhäll, Annika Scheynius, Juha Kere. PLoS One 2012
Lovisa E Reinius, Nathalie Acevedo, Maaike Joerink, Göran Pershagen, Sven-Erik Dahlén, Dario Greco, Cilla Söderhäll, Annika Scheynius, Juha Kere. PLoS One 2012
46
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.
Martin J Aryee, Andrew E Jaffe, Hector Corrada-Bravo, Christine Ladd-Acosta, Andrew P Feinberg, Kasper D Hansen, Rafael A Irizarry. Bioinformatics 2014
Martin J Aryee, Andrew E Jaffe, Hector Corrada-Bravo, Christine Ladd-Acosta, Andrew P Feinberg, Kasper D Hansen, Rafael A Irizarry. Bioinformatics 2014
42
DNA Methylation in Newborns and Maternal Smoking in Pregnancy: Genome-wide Consortium Meta-analysis.
Bonnie R Joubert, Janine F Felix, Paul Yousefi, Kelly M Bakulski, Allan C Just, Carrie Breton, Sarah E Reese, Christina A Markunas, Rebecca C Richmond, Cheng-Jian Xu,[...]. Am J Hum Genet 2016
Bonnie R Joubert, Janine F Felix, Paul Yousefi, Kelly M Bakulski, Allan C Just, Carrie Breton, Sarah E Reese, Christina A Markunas, Rebecca C Richmond, Cheng-Jian Xu,[...]. Am J Hum Genet 2016
35
Accounting for cellular heterogeneity is critical in epigenome-wide association studies.
Andrew E Jaffe, Rafael A Irizarry. Genome Biol 2014
Andrew E Jaffe, Rafael A Irizarry. Genome Biol 2014
24
Improving cell mixture deconvolution by identifying optimal DNA methylation libraries (IDOL).
Devin C Koestler, Meaghan J Jones, Joseph Usset, Brock C Christensen, Rondi A Butler, Michael S Kobor, John K Wiencke, Karl T Kelsey. BMC Bioinformatics 2016
Devin C Koestler, Meaghan J Jones, Joseph Usset, Brock C Christensen, Rondi A Butler, Michael S Kobor, John K Wiencke, Karl T Kelsey. BMC Bioinformatics 2016
22
An evaluation of methods correcting for cell-type heterogeneity in DNA methylation studies.
Kevin McGregor, Sasha Bernatsky, Ines Colmegna, Marie Hudson, Tomi Pastinen, Aurélie Labbe, Celia M T Greenwood. Genome Biol 2016
Kevin McGregor, Sasha Bernatsky, Ines Colmegna, Marie Hudson, Tomi Pastinen, Aurélie Labbe, Celia M T Greenwood. Genome Biol 2016
22
Data Resource Profile: Accessible Resource for Integrated Epigenomic Studies (ARIES).
Caroline L Relton, Tom Gaunt, Wendy McArdle, Karen Ho, Aparna Duggirala, Hashem Shihab, Geoff Woodward, Oliver Lyttleton, David M Evans, Wolf Reik,[...]. Int J Epidemiol 2015
Caroline L Relton, Tom Gaunt, Wendy McArdle, Karen Ho, Aparna Duggirala, Hashem Shihab, Geoff Woodward, Oliver Lyttleton, David M Evans, Wolf Reik,[...]. Int J Epidemiol 2015
20
Reference-free cell mixture adjustments in analysis of DNA methylation data.
Eugene Andres Houseman, John Molitor, Carmen J Marsit. Bioinformatics 2014
Eugene Andres Houseman, John Molitor, Carmen J Marsit. Bioinformatics 2014
20
Cell-type deconvolution in epigenome-wide association studies: a review and recommendations.
Andrew E Teschendorff, Shijie C Zheng. Epigenomics 2017
Andrew E Teschendorff, Shijie C Zheng. Epigenomics 2017
20
Nucleated red blood cells impact DNA methylation and expression analyses of cord blood hematopoietic cells.
Olivia M de Goede, Hamid R Razzaghian, E Magda Price, Meaghan J Jones, Michael S Kobor, Wendy P Robinson, Pascal M Lavoie. Clin Epigenetics 2015
Olivia M de Goede, Hamid R Razzaghian, E Magda Price, Meaghan J Jones, Michael S Kobor, Wendy P Robinson, Pascal M Lavoie. Clin Epigenetics 2015
23
A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies.
Andrew E Teschendorff, Charles E Breeze, Shijie C Zheng, Stephan Beck. BMC Bioinformatics 2017
Andrew E Teschendorff, Charles E Breeze, Shijie C Zheng, Stephan Beck. BMC Bioinformatics 2017
17
Capturing heterogeneity in gene expression studies by surrogate variable analysis.
Jeffrey T Leek, John D Storey. PLoS Genet 2007
Jeffrey T Leek, John D Storey. PLoS Genet 2007
17
High density DNA methylation array with single CpG site resolution.
Marina Bibikova, Bret Barnes, Chan Tsan, Vincent Ho, Brandy Klotzle, Jennie M Le, David Delano, Lu Zhang, Gary P Schroth, Kevin L Gunderson,[...]. Genomics 2011
Marina Bibikova, Bret Barnes, Chan Tsan, Vincent Ho, Brandy Klotzle, Jennie M Le, David Delano, Lu Zhang, Gary P Schroth, Kevin L Gunderson,[...]. Genomics 2011
17
Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray.
Yi-an Chen, Mathieu Lemire, Sanaa Choufani, Darci T Butcher, Daria Grafodatskaya, Brent W Zanke, Steven Gallinger, Thomas J Hudson, Rosanna Weksberg. Epigenetics 2013
Yi-an Chen, Mathieu Lemire, Sanaa Choufani, Darci T Butcher, Daria Grafodatskaya, Brent W Zanke, Steven Gallinger, Thomas J Hudson, Rosanna Weksberg. Epigenetics 2013
17
Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis.
Pan Du, Xiao Zhang, Chiang-Ching Huang, Nadereh Jafari, Warren A Kibbe, Lifang Hou, Simon M Lin. BMC Bioinformatics 2010
Pan Du, Xiao Zhang, Chiang-Ching Huang, Nadereh Jafari, Warren A Kibbe, Lifang Hou, Simon M Lin. BMC Bioinformatics 2010
17
missMethyl: an R package for analyzing data from Illumina's HumanMethylation450 platform.
Belinda Phipson, Jovana Maksimovic, Alicia Oshlack. Bioinformatics 2016
Belinda Phipson, Jovana Maksimovic, Alicia Oshlack. Bioinformatics 2016
17
Validation of a DNA methylation microarray for 850,000 CpG sites of the human genome enriched in enhancer sequences.
Sebastian Moran, Carles Arribas, Manel Esteller. Epigenomics 2016
Sebastian Moran, Carles Arribas, Manel Esteller. Epigenomics 2016
15
Epigenome-wide association studies without the need for cell-type composition.
James Zou, Christoph Lippert, David Heckerman, Martin Aryee, Jennifer Listgarten. Nat Methods 2014
James Zou, Christoph Lippert, David Heckerman, Martin Aryee, Jennifer Listgarten. Nat Methods 2014
15
Independent surrogate variable analysis to deconvolve confounding factors in large-scale microarray profiling studies.
Andrew E Teschendorff, Joanna Zhuang, Martin Widschwendter. Bioinformatics 2011
Andrew E Teschendorff, Joanna Zhuang, Martin Widschwendter. Bioinformatics 2011
15
Systematic identification of genetic influences on methylation across the human life course.
Tom R Gaunt, Hashem A Shihab, Gibran Hemani, Josine L Min, Geoff Woodward, Oliver Lyttleton, Jie Zheng, Aparna Duggirala, Wendy L McArdle, Karen Ho,[...]. Genome Biol 2016
Tom R Gaunt, Hashem A Shihab, Gibran Hemani, Josine L Min, Geoff Woodward, Oliver Lyttleton, Jie Zheng, Aparna Duggirala, Wendy L McArdle, Karen Ho,[...]. Genome Biol 2016
15
Complete pipeline for Infinium(®) Human Methylation 450K BeadChip data processing using subset quantile normalization for accurate DNA methylation estimation.
Nizar Touleimat, Jörg Tost. Epigenomics 2012
Nizar Touleimat, Jörg Tost. Epigenomics 2012
15
Evaluation of the Infinium Methylation 450K technology.
Sarah Dedeurwaerder, Matthieu Defrance, Emilie Calonne, Hélène Denis, Christos Sotiriou, François Fuks. Epigenomics 2011
Sarah Dedeurwaerder, Matthieu Defrance, Emilie Calonne, Hélène Denis, Christos Sotiriou, François Fuks. Epigenomics 2011
13
Cohort Profile: the Avon Longitudinal Study of Parents and Children: ALSPAC mothers cohort.
Abigail Fraser, Corrie Macdonald-Wallis, Kate Tilling, Andy Boyd, Jean Golding, George Davey Smith, John Henderson, John Macleod, Lynn Molloy, Andy Ness,[...]. Int J Epidemiol 2013
Abigail Fraser, Corrie Macdonald-Wallis, Kate Tilling, Andy Boyd, Jean Golding, George Davey Smith, John Henderson, John Macleod, Lynn Molloy, Andy Ness,[...]. Int J Epidemiol 2013
13
450K epigenome-wide scan identifies differential DNA methylation in newborns related to maternal smoking during pregnancy.
Bonnie R Joubert, Siri E Håberg, Roy M Nilsen, Xuting Wang, Stein E Vollset, Susan K Murphy, Zhiqing Huang, Cathrine Hoyo, Øivind Midttun, Lea A Cupul-Uicab,[...]. Environ Health Perspect 2012
Bonnie R Joubert, Siri E Håberg, Roy M Nilsen, Xuting Wang, Stein E Vollset, Susan K Murphy, Zhiqing Huang, Cathrine Hoyo, Øivind Midttun, Lea A Cupul-Uicab,[...]. Environ Health Perspect 2012
13
Sparse PCA corrects for cell type heterogeneity in epigenome-wide association studies.
Elior Rahmani, Noah Zaitlen, Yael Baran, Celeste Eng, Donglei Hu, Joshua Galanter, Sam Oh, Esteban G Burchard, Eleazar Eskin, James Zou,[...]. Nat Methods 2016
Elior Rahmani, Noah Zaitlen, Yael Baran, Celeste Eng, Donglei Hu, Joshua Galanter, Sam Oh, Esteban G Burchard, Eleazar Eskin, James Zou,[...]. Nat Methods 2016
13
A cell epigenotype specific model for the correction of brain cellular heterogeneity bias and its application to age, brain region and major depression.
Jerry Guintivano, Martin J Aryee, Zachary A Kaminsky. Epigenetics 2013
Jerry Guintivano, Martin J Aryee, Zachary A Kaminsky. Epigenetics 2013
13
Validation of a DNA methylation reference panel for the estimation of nucleated cells types in cord blood.
Andres Cardenas, Catherine Allard, Myriam Doyon, E Andres Houseman, Kelly M Bakulski, Patrice Perron, Luigi Bouchard, Marie-France Hivert. Epigenetics 2016
Andres Cardenas, Catherine Allard, Myriam Doyon, E Andres Houseman, Kelly M Bakulski, Patrice Perron, Luigi Bouchard, Marie-France Hivert. Epigenetics 2016
20
De novo identification of differentially methylated regions in the human genome.
Timothy J Peters, Michael J Buckley, Aaron L Statham, Ruth Pidsley, Katherine Samaras, Reginald V Lord, Susan J Clark, Peter L Molloy. Epigenetics Chromatin 2015
Timothy J Peters, Michael J Buckley, Aaron L Statham, Ruth Pidsley, Katherine Samaras, Reginald V Lord, Susan J Clark, Peter L Molloy. Epigenetics Chromatin 2015
13
ENmix: a novel background correction method for Illumina HumanMethylation450 BeadChip.
Zongli Xu, Liang Niu, Leping Li, Jack A Taylor. Nucleic Acids Res 2016
Zongli Xu, Liang Niu, Leping Li, Jack A Taylor. Nucleic Acids Res 2016
13
An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray.
Lucas A Salas, Devin C Koestler, Rondi A Butler, Helen M Hansen, John K Wiencke, Karl T Kelsey, Brock C Christensen. Genome Biol 2018
Lucas A Salas, Devin C Koestler, Rondi A Butler, Helen M Hansen, John K Wiencke, Karl T Kelsey, Brock C Christensen. Genome Biol 2018
13
Genome-wide methylation profiles reveal quantitative views of human aging rates.
Gregory Hannum, Justin Guinney, Ling Zhao, Li Zhang, Guy Hughes, SriniVas Sadda, Brandy Klotzle, Marina Bibikova, Jian-Bing Fan, Yuan Gao,[...]. Mol Cell 2013
Gregory Hannum, Justin Guinney, Ling Zhao, Li Zhang, Guy Hughes, SriniVas Sadda, Brandy Klotzle, Marina Bibikova, Jian-Bing Fan, Yuan Gao,[...]. Mol Cell 2013
11
Two-step epigenetic Mendelian randomization: a strategy for establishing the causal role of epigenetic processes in pathways to disease.
Caroline L Relton, George Davey Smith. Int J Epidemiol 2012
Caroline L Relton, George Davey Smith. Int J Epidemiol 2012
11
Using control genes to correct for unwanted variation in microarray data.
Johann A Gagnon-Bartsch, Terence P Speed. Biostatistics 2012
Johann A Gagnon-Bartsch, Terence P Speed. Biostatistics 2012
11
Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis.
Yun Liu, Martin J Aryee, Leonid Padyukov, M Daniele Fallin, Espen Hesselberg, Arni Runarsson, Lovisa Reinius, Nathalie Acevedo, Margaret Taub, Marcus Ronninger,[...]. Nat Biotechnol 2013
Yun Liu, Martin J Aryee, Leonid Padyukov, M Daniele Fallin, Espen Hesselberg, Arni Runarsson, Lovisa Reinius, Nathalie Acevedo, Margaret Taub, Marcus Ronninger,[...]. Nat Biotechnol 2013
11
Quantitative reconstruction of leukocyte subsets using DNA methylation.
William P Accomando, John K Wiencke, E Andres Houseman, Heather H Nelson, Karl T Kelsey. Genome Biol 2014
William P Accomando, John K Wiencke, E Andres Houseman, Heather H Nelson, Karl T Kelsey. Genome Biol 2014
11
The sva package for removing batch effects and other unwanted variation in high-throughput experiments.
Jeffrey T Leek, W Evan Johnson, Hilary S Parker, Andrew E Jaffe, John D Storey. Bioinformatics 2012
Jeffrey T Leek, W Evan Johnson, Hilary S Parker, Andrew E Jaffe, John D Storey. Bioinformatics 2012
11
Low-level processing of Illumina Infinium DNA Methylation BeadArrays.
Timothy J Triche, Daniel J Weisenberger, David Van Den Berg, Peter W Laird, Kimberly D Siegmund. Nucleic Acids Res 2013
Timothy J Triche, Daniel J Weisenberger, David Van Den Berg, Peter W Laird, Kimberly D Siegmund. Nucleic Acids Res 2013
11
Characterizing the hypomethylated DNA methylation profile of nucleated red blood cells from cord blood.
Olivia M de Goede, Pascal M Lavoie, Wendy P Robinson. Epigenomics 2016
Olivia M de Goede, Pascal M Lavoie, Wendy P Robinson. Epigenomics 2016
35
Epigenome-Wide Meta-Analysis of Methylation in Children Related to Prenatal NO2 Air Pollution Exposure.
Olena Gruzieva, Cheng-Jian Xu, Carrie V Breton, Isabella Annesi-Maesano, Josep M Antó, Charles Auffray, Stéphane Ballereau, Tom Bellander, Jean Bousquet, Mariona Bustamante,[...]. Environ Health Perspect 2017
Olena Gruzieva, Cheng-Jian Xu, Carrie V Breton, Isabella Annesi-Maesano, Josep M Antó, Charles Auffray, Stéphane Ballereau, Tom Bellander, Jean Bousquet, Mariona Bustamante,[...]. Environ Health Perspect 2017
11
Reducing the risk of false discovery enabling identification of biologically significant genome-wide methylation status using the HumanMethylation450 array.
Haroon Naeem, Nicholas C Wong, Zac Chatterton, Matthew K H Hong, John S Pedersen, Niall M Corcoran, Christopher M Hovens, Geoff Macintyre. BMC Genomics 2014
Haroon Naeem, Nicholas C Wong, Zac Chatterton, Matthew K H Hong, John S Pedersen, Niall M Corcoran, Christopher M Hovens, Geoff Macintyre. BMC Genomics 2014
11
DNA Methylation Score as a Biomarker in Newborns for Sustained Maternal Smoking during Pregnancy.
Sarah E Reese, Shanshan Zhao, Michael C Wu, Bonnie R Joubert, Christine L Parr, Siri E Håberg, Per Magne Ueland, Roy M Nilsen, Øivind Midttun, Stein Emil Vollset,[...]. Environ Health Perspect 2017
Sarah E Reese, Shanshan Zhao, Michael C Wu, Bonnie R Joubert, Christine L Parr, Siri E Håberg, Per Magne Ueland, Roy M Nilsen, Øivind Midttun, Stein Emil Vollset,[...]. Environ Health Perspect 2017
11
A coherent approach for analysis of the Illumina HumanMethylation450 BeadChip improves data quality and performance in epigenome-wide association studies.
Benjamin Lehne, Alexander W Drong, Marie Loh, Weihua Zhang, William R Scott, Sian-Tsung Tan, Uzma Afzal, James Scott, Marjo-Riitta Jarvelin, Paul Elliott,[...]. Genome Biol 2015
Benjamin Lehne, Alexander W Drong, Marie Loh, Weihua Zhang, William R Scott, Sian-Tsung Tan, Uzma Afzal, James Scott, Marjo-Riitta Jarvelin, Paul Elliott,[...]. Genome Biol 2015
11
Recommendations for the design and analysis of epigenome-wide association studies.
Karin B Michels, Alexandra M Binder, Sarah Dedeurwaerder, Charles B Epstein, John M Greally, Ivo Gut, E Andres Houseman, Benedetta Izzi, Karl T Kelsey, Alexander Meissner,[...]. Nat Methods 2013
Karin B Michels, Alexandra M Binder, Sarah Dedeurwaerder, Charles B Epstein, John M Greally, Ivo Gut, E Andres Houseman, Benedetta Izzi, Karl T Kelsey, Alexander Meissner,[...]. Nat Methods 2013
11
A data-driven approach to preprocessing Illumina 450K methylation array data.
Ruth Pidsley, Chloe C Y Wong, Manuela Volta, Katie Lunnon, Jonathan Mill, Leonard C Schalkwyk. BMC Genomics 2013
Ruth Pidsley, Chloe C Y Wong, Manuela Volta, Katie Lunnon, Jonathan Mill, Leonard C Schalkwyk. BMC Genomics 2013
11
Prenatal exposure to maternal depressed mood and the MTHFR C677T variant affect SLC6A4 methylation in infants at birth.
Angela M Devlin, Ursula Brain, Jehannine Austin, Tim F Oberlander. PLoS One 2010
Angela M Devlin, Ursula Brain, Jehannine Austin, Tim F Oberlander. PLoS One 2010
11
Prenatal exposure to maternal depression, neonatal methylation of human glucocorticoid receptor gene (NR3C1) and infant cortisol stress responses.
Tim F Oberlander, Joanne Weinberg, Michael Papsdorf, Ruth Grunau, Shaila Misri, Angela M Devlin. Epigenetics 2008
Tim F Oberlander, Joanne Weinberg, Michael Papsdorf, Ruth Grunau, Shaila Misri, Angela M Devlin. Epigenetics 2008
11
Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi.
Jean-Philippe Fortin, Timothy J Triche, Kasper D Hansen. Bioinformatics 2017
Jean-Philippe Fortin, Timothy J Triche, Kasper D Hansen. Bioinformatics 2017
11
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.