A citation-based method for searching scientific literature

Vaclav Urban, Jana Dobrovolna, Daniela Hühn, Jana Fryzelkova, Jiri Bartek, Pavel Janscak. J Cell Biol 2016
Times Cited: 39







List of co-cited articles
676 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


RECQL5 controls transcript elongation and suppresses genome instability associated with transcription stress.
Marco Saponaro, Theodoros Kantidakis, Richard Mitter, Gavin P Kelly, Mark Heron, Hannah Williams, Johannes Söding, Aengus Stewart, Jesper Q Svejstrup. Cell 2014
115
53

RECQL5/Recql5 helicase regulates homologous recombination and suppresses tumor formation via disruption of Rad51 presynaptic filaments.
Yiduo Hu, Steven Raynard, Michael G Sehorn, Xincheng Lu, Wendy Bussen, Lu Zheng, Jeremy M Stark, Ellen L Barnes, Peter Chi, Pavel Janscak,[...]. Genes Dev 2007
249
41

Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability.
Julie Sollier, Caroline Townsend Stork, María L García-Rubio, Renee D Paulsen, Andrés Aguilera, Karlene A Cimprich. Mol Cell 2014
294
38

Transcription-Replication Conflict Orientation Modulates R-Loop Levels and Activates Distinct DNA Damage Responses.
Stephan Hamperl, Michael J Bocek, Joshua C Saldivar, Tomek Swigut, Karlene A Cimprich. Cell 2017
236
38


RECQ5 Helicase Cooperates with MUS81 Endonuclease in Processing Stalled Replication Forks at Common Fragile Sites during Mitosis.
Stefano Di Marco, Zdenka Hasanova, Radhakrishnan Kanagaraj, Nagaraja Chappidi, Veronika Altmannova, Shruti Menon, Hana Sedlackova, Jana Langhoff, Kalpana Surendranath, Daniela Hühn,[...]. Mol Cell 2017
46
35

Human RecQ helicases in DNA repair, recombination, and replication.
Deborah L Croteau, Venkateswarlu Popuri, Patricia L Opresko, Vilhelm A Bohr. Annu Rev Biochem 2014
323
33

RECQ5 helicase associates with the C-terminal repeat domain of RNA polymerase II during productive elongation phase of transcription.
Radhakrishnan Kanagaraj, Daniela Huehn, April MacKellar, Mirco Menigatti, Lu Zheng, Vaclav Urban, Igor Shevelev, Arno L Greenleaf, Pavel Janscak. Nucleic Acids Res 2010
55
33

Topoisomerase I suppresses genomic instability by preventing interference between replication and transcription.
Sandie Tuduri, Laure Crabbé, Chiara Conti, Hélène Tourrière, Heidi Holtgreve-Grez, Anna Jauch, Véronique Pantesco, John De Vos, Aubin Thomas, Charles Theillet,[...]. Nat Cell Biol 2009
334
30

The Fanconi Anemia Pathway Maintains Genome Stability by Coordinating Replication and Transcription.
Rebekka A Schwab, Jadwiga Nieminuszczy, Fenil Shah, Jamie Langton, David Lopez Martinez, Chih-Chao Liang, Martin A Cohn, Richard J Gibbons, Andrew J Deans, Wojciech Niedzwiedz. Mol Cell 2015
202
30

Transcription-replication encounters, consequences and genomic instability.
Anne Helmrich, Monica Ballarino, Evgeny Nudler, Laszlo Tora. Nat Struct Mol Biol 2013
180
28

BRCA2 prevents R-loop accumulation and associates with TREX-2 mRNA export factor PCID2.
Vaibhav Bhatia, Sonia I Barroso, María L García-Rubio, Emanuela Tumini, Emilia Herrera-Moyano, Andrés Aguilera. Nature 2014
295
28

BRCA1 recruitment to transcriptional pause sites is required for R-loop-driven DNA damage repair.
Elodie Hatchi, Konstantina Skourti-Stathaki, Steffen Ventz, Luca Pinello, Angela Yen, Kinga Kamieniarz-Gdula, Stoil Dimitrov, Shailja Pathania, Kristine M McKinney, Matthew L Eaton,[...]. Mol Cell 2015
237
28

SUMO2 conjugation of PCNA facilitates chromatin remodeling to resolve transcription-replication conflicts.
Min Li, Xiaohua Xu, Chou-Wei Chang, Li Zheng, Binghui Shen, Yilun Liu. Nat Commun 2018
28
39

Structural mimicry in transcription regulation of human RNA polymerase II by the DNA helicase RECQL5.
Susanne A Kassube, Martin Jinek, Jie Fang, Susan Tsutakawa, Eva Nogales. Nat Struct Mol Biol 2013
25
40

R loops: from transcription byproducts to threats to genome stability.
Andrés Aguilera, Tatiana García-Muse. Mol Cell 2012
587
25

Transcription-replication conflicts: how they occur and how they are resolved.
Tatiana García-Muse, Andrés Aguilera. Nat Rev Mol Cell Biol 2016
177
25

Double-strand break repair-independent role for BRCA2 in blocking stalled replication fork degradation by MRE11.
Katharina Schlacher, Nicole Christ, Nicolas Siaud, Akinori Egashira, Hong Wu, Maria Jasin. Cell 2011
743
23

R loops: new modulators of genome dynamics and function.
José M Santos-Pereira, Andrés Aguilera. Nat Rev Genet 2015
393
23

The Bloom's syndrome gene product is homologous to RecQ helicases.
N A Ellis, J Groden, T Z Ye, J Straughen, D J Lennon, S Ciocci, M Proytcheva, J German. Cell 1995
23

Increased replication initiation and conflicts with transcription underlie Cyclin E-induced replication stress.
R M Jones, O Mortusewicz, I Afzal, M Lorvellec, P García, T Helleday, E Petermann. Oncogene 2013
154
23

A RECQ5-RNA polymerase II association identified by targeted proteomic analysis of human chromatin.
Ozan Aygün, Jesper Svejstrup, Yilun Liu. Proc Natl Acad Sci U S A 2008
109
23

Increased global transcription activity as a mechanism of replication stress in cancer.
Panagiotis Kotsantis, Lara Marques Silva, Sarah Irmscher, Rebecca M Jones, Lisa Folkes, Natalia Gromak, Eva Petermann. Nat Commun 2016
139
23

RECQ5-dependent SUMOylation of DNA topoisomerase I prevents transcription-associated genome instability.
Min Li, Subhash Pokharel, Jiin-Tarng Wang, Xiaohua Xu, Yilun Liu. Nat Commun 2015
37
24


Human RECQ5 helicase promotes repair of DNA double-strand breaks by synthesis-dependent strand annealing.
Shreya Paliwal, Radhakrishnan Kanagaraj, Andreas Sturzenegger, Kamila Burdova, Pavel Janscak. Nucleic Acids Res 2014
39
23

R-loop-mediated genomic instability is caused by impairment of replication fork progression.
Wenjian Gan, Zhishuang Guan, Jie Liu, Ting Gui, Keng Shen, James L Manley, Xialu Li. Genes Dev 2011
257
23

Fork Cleavage-Religation Cycle and Active Transcription Mediate Replication Restart after Fork Stalling at Co-transcriptional R-Loops.
Nagaraja Chappidi, Zuzana Nascakova, Barbora Boleslavska, Ralph Zellweger, Esin Isik, Martin Andrs, Shruti Menon, Jana Dobrovolna, Chiara Balbo Pogliano, Joao Matos,[...]. Mol Cell 2020
43
23

Human RECQ1 promotes restart of replication forks reversed by DNA topoisomerase I inhibition.
Matteo Berti, Arnab Ray Chaudhuri, Saravanabhavan Thangavel, Shivasankari Gomathinayagam, Sasa Kenig, Marko Vujanovic, Federico Odreman, Timo Glatter, Simona Graziano, Ramiro Mendoza-Maldonado,[...]. Nat Struct Mol Biol 2013
256
20


Direct inhibition of RNA polymerase II transcription by RECQL5.
Ozan Aygün, Xiaohua Xu, Yilun Liu, Hidehisa Takahashi, Stephanie E Kong, Ronald C Conaway, Joan W Conaway, Jesper Q Svejstrup. J Biol Chem 2009
49
20

The Fanconi Anemia Pathway Protects Genome Integrity from R-loops.
María L García-Rubio, Carmen Pérez-Calero, Sonia I Barroso, Emanuela Tumini, Emilia Herrera-Moyano, Iván V Rosado, Andrés Aguilera. PLoS Genet 2015
167
20

Transcription as a Threat to Genome Integrity.
Hélène Gaillard, Andrés Aguilera. Annu Rev Biochem 2016
104
17




Causes and consequences of replication stress.
Michelle K Zeman, Karlene A Cimprich. Nat Cell Biol 2014
17

Loss of Topoisomerase I leads to R-loop-mediated transcriptional blocks during ribosomal RNA synthesis.
Aziz El Hage, Sarah L French, Ann L Beyer, David Tollervey. Genes Dev 2010
283
17

R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters.
Paul A Ginno, Paul L Lott, Holly C Christensen, Ian Korf, Frédéric Chédin. Mol Cell 2012
450
17



Mutations in RECQL4 cause a subset of cases of Rothmund-Thomson syndrome.
S Kitao, A Shimamoto, M Goto, R W Miller, W A Smithson, N M Lindor, Y Furuichi. Nat Genet 1999
511
17

PIF1 family DNA helicases suppress R-loop mediated genome instability at tRNA genes.
Phong Lan Thao Tran, Thomas J Pohl, Chi-Fu Chen, Angela Chan, Sebastian Pott, Virginia A Zakian. Nat Commun 2017
62
17

Insights into the RecQ helicase mechanism revealed by the structure of the helicase domain of human RECQL5.
Joseph A Newman, Hazel Aitkenhead, Pavel Savitsky, Opher Gileadi. Nucleic Acids Res 2017
12
58




Transcription-mediated replication hindrance: a major driver of genome instability.
Belén Gómez-González, Andrés Aguilera. Genes Dev 2019
91
17

Replication stress and cancer.
Hélène Gaillard, Tatiana García-Muse, Andrés Aguilera. Nat Rev Cancer 2015
458
15

ATR prohibits replication catastrophe by preventing global exhaustion of RPA.
Luis Ignacio Toledo, Matthias Altmeyer, Maj-Britt Rask, Claudia Lukas, Dorthe Helena Larsen, Lou Klitgaard Povlsen, Simon Bekker-Jensen, Niels Mailand, Jiri Bartek, Jiri Lukas. Cell 2013
482
15


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.