A citation-based method for searching scientific literature

Nicolas J Lehrbach, Gary Ruvkun. Elife 2016
Times Cited: 113







List of co-cited articles
1136 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The aspartyl protease DDI2 activates Nrf1 to compensate for proteasome dysfunction.
Shun Koizumi, Taro Irie, Shoshiro Hirayama, Yasuyuki Sakurai, Hideki Yashiroda, Isao Naguro, Hidenori Ichijo, Jun Hamazaki, Shigeo Murata. Elife 2016
96
48

Transcription factor Nrf1 mediates the proteasome recovery pathway after proteasome inhibition in mammalian cells.
Senthil K Radhakrishnan, Candy S Lee, Patrick Young, Anne Beskow, Jefferson Y Chan, Raymond J Deshaies. Mol Cell 2010
326
47

Inhibition of NGLY1 Inactivates the Transcription Factor Nrf1 and Potentiates Proteasome Inhibitor Cytotoxicity.
Frederick M Tomlin, Ulla I M Gerling-Driessen, Yi-Chang Liu, Ryan A Flynn, Janakiram R Vangala, Christian S Lentz, Sandra Clauder-Muenster, Petra Jakob, William F Mueller, Diana Ordoñez-Rueda,[...]. ACS Cent Sci 2017
83
45

Proteasomal degradation is transcriptionally controlled by TCF11 via an ERAD-dependent feedback loop.
Janos Steffen, Michael Seeger, Annett Koch, Elke Krüger. Mol Cell 2010
241
37

Mutations in NGLY1 cause an inherited disorder of the endoplasmic reticulum-associated degradation pathway.
Gregory M Enns, Vandana Shashi, Matthew Bainbridge, Michael J Gambello, Farah R Zahir, Thomas Bast, Rebecca Crimian, Kelly Schoch, Julia Platt, Rachel Cox,[...]. Genet Med 2014
129
31



Prospective phenotyping of NGLY1-CDDG, the first congenital disorder of deglycosylation.
Christina Lam, Carlos Ferreira, Donna Krasnewich, Camilo Toro, Lea Latham, Wadih M Zein, Tanya Lehky, Carmen Brewer, Eva H Baker, Audrey Thurm,[...]. Genet Med 2017
74
37


Endo-β-N-acetylglucosaminidase forms N-GlcNAc protein aggregates during ER-associated degradation in Ngly1-defective cells.
Chengcheng Huang, Yoichiro Harada, Akira Hosomi, Yuki Masahara-Negishi, Junichi Seino, Haruhiko Fujihira, Yoko Funakoshi, Takehiro Suzuki, Naoshi Dohmae, Tadashi Suzuki. Proc Natl Acad Sci U S A 2015
68
33

Clinical application of exome sequencing in undiagnosed genetic conditions.
Anna C Need, Vandana Shashi, Yuki Hitomi, Kelly Schoch, Kevin V Shianna, Marie T McDonald, Miriam H Meisler, David B Goldstein. J Med Genet 2012
289
22

Transcriptome and functional analysis in a Drosophila model of NGLY1 deficiency provides insight into therapeutic approaches.
Katie G Owings, Joshua B Lowry, Yiling Bi, Matthew Might, Clement Y Chow. Hum Mol Genet 2018
36
61

N-glycanase NGLY1 regulates mitochondrial homeostasis and inflammation through NRF1.
Kun Yang, Ryan Huang, Haruhiko Fujihira, Tadashi Suzuki, Nan Yan. J Exp Med 2018
59
35

Lethality of mice bearing a knockout of the Ngly1-gene is partially rescued by the additional deletion of the Engase gene.
Haruhiko Fujihira, Yuki Masahara-Negishi, Masaru Tamura, Chengcheng Huang, Yoichiro Harada, Shigeharu Wakana, Daisuke Takakura, Nana Kawasaki, Naoyuki Taniguchi, Gen Kondoh,[...]. PLoS Genet 2017
44
45

The cytoplasmic peptide:N-glycanase (NGLY1) - Structure, expression and cellular functions.
Tadashi Suzuki, Chengcheng Huang, Haruhiko Fujihira. Gene 2016
60
33

Tissue-specific regulation of BMP signaling by Drosophila N-glycanase 1.
Antonio Galeone, Seung Yeop Han, Chengcheng Huang, Akira Hosomi, Tadashi Suzuki, Hamed Jafar-Nejad. Elife 2017
24
79

SKN-1/Nrf, stress responses, and aging in Caenorhabditis elegans.
T Keith Blackwell, Michael J Steinbaugh, John M Hourihan, Collin Y Ewald, Meltem Isik. Free Radic Biol Med 2015
250
17


The Logic of the 26S Proteasome.
Galen Andrew Collins, Alfred L Goldberg. Cell 2017
397
16

Specific SKN-1/Nrf stress responses to perturbations in translation elongation and proteasome activity.
Xuan Li, Olli Matilainen, Congyu Jin, Kira M Glover-Cutter, Carina I Holmberg, T Keith Blackwell. PLoS Genet 2011
97
15

Antioxidants enhance mammalian proteasome expression through the Keap1-Nrf2 signaling pathway.
Mi-Kyoung Kwak, Nobunao Wakabayashi, Jennifer L Greenlaw, Masayuki Yamamoto, Thomas W Kensler. Mol Cell Biol 2003
357
15

Loss of nuclear factor E2-related factor 1 in the brain leads to dysregulation of proteasome gene expression and neurodegeneration.
Candy S Lee, Chiashan Lee, Terry Hu, Janice M Nguyen, Jiasheng Zhang, Maureen V Martin, Marquis P Vawter, Eric J Huang, Jefferson Y Chan. Proc Natl Acad Sci U S A 2011
102
15



Evidence for an essential deglycosylation-independent activity of PNGase in Drosophila melanogaster.
Yoko Funakoshi, Yuki Negishi, J Peter Gergen, Junichi Seino, Kumiko Ishii, William J Lennarz, Ichiro Matsuo, Yukishige Ito, Naoyuki Taniguchi, Tadashi Suzuki. PLoS One 2010
31
45

Mitochondrial function requires NGLY1.
Jianping Kong, Min Peng, Julian Ostrovsky, Young Joon Kwon, Olga Oretsky, Elizabeth M McCormick, Miao He, Yair Argon, Marni J Falk. Mitochondrion 2018
30
46


Dual regulation of the transcriptional activity of Nrf1 by β-TrCP- and Hrd1-dependent degradation mechanisms.
Yoshiki Tsuchiya, Tomoko Morita, Mehee Kim, Shun-ichiro Iemura, Tohru Natsume, Masayuki Yamamoto, Akira Kobayashi. Mol Cell Biol 2011
67
20

Human DNA-Damage-Inducible 2 Protein Is Structurally and Functionally Distinct from Its Yeast Ortholog.
Monika Sivá, Michal Svoboda, Václav Veverka, Jean-François Trempe, Kay Hofmann, Milan Kožíšek, Rozálie Hexnerová, František Sedlák, Jan Belza, Jiří Brynda,[...]. Sci Rep 2016
28
46

NGLY1 mutation causes neuromotor impairment, intellectual disability, and neuropathy.
Ahmet Okay Caglayan, Sinan Comu, Jacob F Baranoski, Yesim Parman, Hande Kaymakçalan, Gozde Tugce Akgumus, Caner Caglar, Duygu Dolen, Emine Zeynep Erson-Omay, Akdes Serin Harmanci,[...]. Eur J Med Genet 2015
53
24

DNA-damage-inducible 1 protein (Ddi1) contains an uncharacteristic ubiquitin-like domain that binds ubiquitin.
Urszula Nowicka, Daoning Zhang, Olivier Walker, Daria Krutauz, Carlos A Castañeda, Apurva Chaturvedi, Tony Y Chen, Noa Reis, Michael H Glickman, David Fushman. Structure 2015
46
26

Basic leucine zipper protein Cnc-C is a substrate and transcriptional regulator of the Drosophila 26S proteasome.
Kristian Björk Grimberg, Anne Beskow, Daniel Lundin, Monica M Davis, Patrick Young. Mol Cell Biol 2011
48
25

Ddi1, a eukaryotic protein with the retroviral protease fold.
Roy Sirkis, Jeffrey E Gerst, Deborah Fass. J Mol Biol 2006
55
21

Defects in the Neuroendocrine Axis Contribute to Global Development Delay in a Drosophila Model of NGLY1 Deficiency.
Tamy Portillo Rodriguez, Joshua D Mast, Tom Hartl, Tom Lee, Peter Sand, Ethan O Perlstein. G3 (Bethesda) 2018
17
70

Ngly1 -/- rats develop neurodegenerative phenotypes and pathological abnormalities in their peripheral and central nervous systems.
Makoto Asahina, Reiko Fujinawa, Sayuri Nakamura, Kotaro Yokoyama, Ryuichi Tozawa, Tadashi Suzuki. Hum Mol Genet 2020
18
66

Nuclear Factor Erythroid-2 Like 1 (NFE2L1): Structure, function and regulation.
Hyun Min Kim, Jeong Woo Han, Jefferson Y Chan. Gene 2016
62
17


Regulation of BMP4/Dpp retrotranslocation and signaling by deglycosylation.
Antonio Galeone, Joshua M Adams, Shinya Matsuda, Maximiliano F Presa, Ashutosh Pandey, Seung Yeop Han, Yuriko Tachida, Hiroto Hirayama, Thomas Vaccari, Tadashi Suzuki,[...]. Elife 2020
16
68

Integration of the unfolded protein and oxidative stress responses through SKN-1/Nrf.
Kira M Glover-Cutter, Stephanie Lin, T Keith Blackwell. PLoS Genet 2013
106
10

Lipid-mediated regulation of SKN-1/Nrf in response to germ cell absence.
Michael J Steinbaugh, Sri Devi Narasimhan, Stacey Robida-Stubbs, Lorenza E Moronetti Mazzeo, Jonathan M Dreyfuss, John M Hourihan, Prashant Raghavan, Theresa N Operaña, Reza Esmaillie, T Keith Blackwell. Elife 2015
114
10

A congenital disorder of deglycosylation: Biochemical characterization of N-glycanase 1 deficiency in patient fibroblasts.
Ping He, Jeff E Grotzke, Bobby G Ng, Murat Gunel, Hamed Jafar-Nejad, Peter Cresswell, Gregory M Enns, Hudson H Freeze. Glycobiology 2015
27
37


The casein kinase 2-nrf1 axis controls the clearance of ubiquitinated proteins by regulating proteasome gene expression.
Yoshiki Tsuchiya, Hiroaki Taniguchi, Yoshiyuki Ito, Tomoko Morita, M Rezaul Karim, Norihito Ohtake, Kousuke Fukagai, Takao Ito, Shota Okamuro, Shun-Ichiro Iemura,[...]. Mol Cell Biol 2013
39
25


Nrf1 can be processed and activated in a proteasome-independent manner.
Janakiram R Vangala, Franziska Sotzny, Elke Krüger, Raymond J Deshaies, Senthil K Radhakrishnan. Curr Biol 2016
21
47

Regulation of proteasome assembly and activity in health and disease.
Adrien Rousseau, Anne Bertolotti. Nat Rev Mol Cell Biol 2018
163
10

PNG1, a yeast gene encoding a highly conserved peptide:N-glycanase.
T Suzuki, H Park, N M Hollingsworth, R Sternglanz, W J Lennarz. J Cell Biol 2000
167
10

Rpn1 provides adjacent receptor sites for substrate binding and deubiquitination by the proteasome.
Yuan Shi, Xiang Chen, Suzanne Elsasser, Bradley B Stocks, Geng Tian, Byung-Hoon Lee, Yanhong Shi, Naixia Zhang, Stefanie A H de Poot, Fabian Tuebing,[...]. Science 2016
158
9

Two neurons mediate diet-restriction-induced longevity in C. elegans.
Nicholas A Bishop, Leonard Guarente. Nature 2007
467
9



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.