A citation-based method for searching scientific literature

Amalie Kai Bentzen, Andrea Marion Marquard, Rikke Lyngaa, Sunil Kumar Saini, Sofie Ramskov, Marco Donia, Lina Such, Andrew J S Furness, Nicholas McGranahan, Rachel Rosenthal, Per Thor Straten, Zoltan Szallasi, Inge Marie Svane, Charles Swanton, Sergio A Quezada, Søren Nyboe Jakobsen, Aron Charles Eklund, Sine Reker Hadrup. Nat Biotechnol 2016
Times Cited: 168







List of co-cited articles
1409 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


An immunogenic personal neoantigen vaccine for patients with melanoma.
Patrick A Ott, Zhuting Hu, Derin B Keskin, Sachet A Shukla, Jing Sun, David J Bozym, Wandi Zhang, Adrienne Luoma, Anita Giobbie-Hurder, Lauren Peter,[...]. Nature 2017
29

NetMHCpan-4.0: Improved Peptide-MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data.
Vanessa Jurtz, Sinu Paul, Massimo Andreatta, Paolo Marcatili, Bjoern Peters, Morten Nielsen. J Immunol 2017
607
27

High-throughput determination of the antigen specificities of T cell receptors in single cells.
Shu-Qi Zhang, Ke-Yue Ma, Alexandra A Schonnesen, Mingliang Zhang, Chenfeng He, Eric Sun, Chad M Williams, Weiping Jia, Ning Jiang. Nat Biotechnol 2018
76
31

Personalized RNA mutanome vaccines mobilize poly-specific therapeutic immunity against cancer.
Ugur Sahin, Evelyna Derhovanessian, Matthias Miller, Björn-Philipp Kloke, Petra Simon, Martin Löwer, Valesca Bukur, Arbel D Tadmor, Ulrich Luxemburger, Barbara Schrörs,[...]. Nature 2017
22

Clonal neoantigens elicit T cell immunoreactivity and sensitivity to immune checkpoint blockade.
Nicholas McGranahan, Andrew J S Furness, Rachel Rosenthal, Sofie Ramskov, Rikke Lyngaa, Sunil Kumar Saini, Mariam Jamal-Hanjani, Gareth A Wilson, Nicolai J Birkbak, Crispin T Hiley,[...]. Science 2016
21

Neoantigens in cancer immunotherapy.
Ton N Schumacher, Robert D Schreiber. Science 2015
21

Cancer immunotherapy based on mutation-specific CD4+ T cells in a patient with epithelial cancer.
Eric Tran, Simon Turcotte, Alena Gros, Paul F Robbins, Yong-Chen Lu, Mark E Dudley, John R Wunderlich, Robert P Somerville, Katherine Hogan, Christian S Hinrichs,[...]. Science 2014
20

Design and use of conditional MHC class I ligands.
Mireille Toebes, Miriam Coccoris, Adriaan Bins, Boris Rodenko, Raquel Gomez, Nella J Nieuwkoop, Willeke van de Kasteele, Guus F Rimmelzwaan, John B A G Haanen, Huib Ovaa,[...]. Nat Med 2006
249
20

Combinatorial tetramer staining and mass cytometry analysis facilitate T-cell epitope mapping and characterization.
Evan W Newell, Natalia Sigal, Nitya Nair, Brian A Kidd, Harry B Greenberg, Mark M Davis. Nat Biotechnol 2013
194
20

Phenotypic analysis of antigen-specific T lymphocytes.
J D Altman, P A Moss, P J Goulder, D H Barouch, M G McHeyzer-Williams, J I Bell, A J McMichael, M M Davis. Science 1996
19

Parallel detection of antigen-specific T-cell responses by multidimensional encoding of MHC multimers.
Sine Reker Hadrup, Arnold H Bakker, Chengyi J Shu, Rikke S Andersen, Jerre van Veluw, Pleun Hombrink, Emilie Castermans, Per Thor Straten, Christian Blank, John B Haanen,[...]. Nat Methods 2009
212
19

Bystander CD8+ T cells are abundant and phenotypically distinct in human tumour infiltrates.
Yannick Simoni, Etienne Becht, Michael Fehlings, Chiew Yee Loh, Si-Lin Koo, Karen Wei Weng Teng, Joe Poh Sheng Yeong, Rahul Nahar, Tong Zhang, Hassen Kared,[...]. Nature 2018
551
18

Deconstructing the peptide-MHC specificity of T cell recognition.
Michael E Birnbaum, Juan L Mendoza, Dhruv K Sethi, Shen Dong, Jacob Glanville, Jessica Dobbins, Engin Ozkan, Mark M Davis, Kai W Wucherpfennig, K Christopher Garcia. Cell 2014
325
18

Cancer immunology. Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer.
Naiyer A Rizvi, Matthew D Hellmann, Alexandra Snyder, Pia Kvistborg, Vladimir Makarov, Jonathan J Havel, William Lee, Jianda Yuan, Phillip Wong, Teresa S Ho,[...]. Science 2015
18

T cell receptor fingerprinting enables in-depth characterization of the interactions governing recognition of peptide-MHC complexes.
Amalie K Bentzen, Lina Such, Kamilla K Jensen, Andrea M Marquard, Leon E Jessen, Natalie J Miller, Candice D Church, Rikke Lyngaa, David M Koelle, Jürgen C Becker,[...]. Nat Biotechnol 2018
54
33

Mass Spectrometry Profiling of HLA-Associated Peptidomes in Mono-allelic Cells Enables More Accurate Epitope Prediction.
Jennifer G Abelin, Derin B Keskin, Siranush Sarkizova, Christina R Hartigan, Wandi Zhang, John Sidney, Jonathan Stevens, William Lane, Guang Lan Zhang, Thomas M Eisenhaure,[...]. Immunity 2017
312
17

Quantifiable predictive features define epitope-specific T cell receptor repertoires.
Pradyot Dash, Andrew J Fiore-Gartland, Tomer Hertz, George C Wang, Shalini Sharma, Aisha Souquette, Jeremy Chase Crawford, E Bridie Clemens, Thi H O Nguyen, Katherine Kedzierska,[...]. Nature 2017
319
17

Targeting of cancer neoantigens with donor-derived T cell receptor repertoires.
Erlend Strønen, Mireille Toebes, Sander Kelderman, Marit M van Buuren, Weiwen Yang, Nienke van Rooij, Marco Donia, Maxi-Lu Böschen, Fridtjof Lund-Johansen, Johanna Olweus,[...]. Science 2016
283
17

T-Cell Transfer Therapy Targeting Mutant KRAS in Cancer.
Eric Tran, Paul F Robbins, Yong-Chen Lu, Todd D Prickett, Jared J Gartner, Li Jia, Anna Pasetto, Zhili Zheng, Satyajit Ray, Eric M Groh,[...]. N Engl J Med 2016
657
17

Identifying specificity groups in the T cell receptor repertoire.
Jacob Glanville, Huang Huang, Allison Nau, Olivia Hatton, Lisa E Wagar, Florian Rubelt, Xuhuai Ji, Arnold Han, Sheri M Krams, Christina Pettus,[...]. Nature 2017
424
16

Immune recognition of somatic mutations leading to complete durable regression in metastatic breast cancer.
Nikolaos Zacharakis, Harshini Chinnasamy, Mary Black, Hui Xu, Yong-Chen Lu, Zhili Zheng, Anna Pasetto, Michelle Langhan, Thomas Shelton, Todd Prickett,[...]. Nat Med 2018
389
16

Prospective identification of neoantigen-specific lymphocytes in the peripheral blood of melanoma patients.
Alena Gros, Maria R Parkhurst, Eric Tran, Anna Pasetto, Paul F Robbins, Sadia Ilyas, Todd D Prickett, Jared J Gartner, Jessica S Crystal, Ilana M Roberts,[...]. Nat Med 2016
514
16

Mining exomic sequencing data to identify mutated antigens recognized by adoptively transferred tumor-reactive T cells.
Paul F Robbins, Yong-Chen Lu, Mona El-Gamil, Yong F Li, Colin Gross, Jared Gartner, Jimmy C Lin, Jamie K Teer, Paul Cliften, Eric Tycksen,[...]. Nat Med 2013
769
16

Antigen Identification for Orphan T Cell Receptors Expressed on Tumor-Infiltrating Lymphocytes.
Marvin H Gee, Arnold Han, Shane M Lofgren, John F Beausang, Juan L Mendoza, Michael E Birnbaum, Michael T Bethune, Suzanne Fischer, Xinbo Yang, Raquel Gomez-Eerland,[...]. Cell 2018
152
16

Low and variable tumor reactivity of the intratumoral TCR repertoire in human cancers.
Wouter Scheper, Sander Kelderman, Lorenzo F Fanchi, Carsten Linnemann, Gavin Bendle, Marije A J de Rooij, Christian Hirt, Riccardo Mezzadra, Maarten Slagter, Krijn Dijkstra,[...]. Nat Med 2019
247
16

Direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometry.
Michal Bassani-Sternberg, Eva Bräunlein, Richard Klar, Thomas Engleitner, Pavel Sinitcyn, Stefan Audehm, Melanie Straub, Julia Weber, Julia Slotta-Huspenina, Katja Specht,[...]. Nat Commun 2016
366
15

Simultaneous detection of many T-cell specificities using combinatorial tetramer staining.
Evan W Newell, Lawrence O Klein, Wong Yu, Mark M Davis. Nat Methods 2009
123
15

Generation of peptide-MHC class I complexes through UV-mediated ligand exchange.
Boris Rodenko, Mireille Toebes, Sine Reker Hadrup, Wim J E van Esch, Annemieke M Molenaar, Ton N M Schumacher, Huib Ovaa. Nat Protoc 2006
202
15

T cell antigen discovery via signaling and antigen-presenting bifunctional receptors.
Alok V Joglekar, Michael T Leonard, John D Jeppson, Margaret Swift, Guideng Li, Stephanie Wong, Songming Peng, Jesse M Zaretsky, James R Heath, Antoni Ribas,[...]. Nat Methods 2019
51
27

Predicting immunogenic tumour mutations by combining mass spectrometry and exome sequencing.
Mahesh Yadav, Suchit Jhunjhunwala, Qui T Phung, Patrick Lupardus, Joshua Tanguay, Stephanie Bumbaca, Christian Franci, Tommy K Cheung, Jens Fritsche, Toni Weinschenk,[...]. Nature 2014
725
14

Properties of MHC class I presented peptides that enhance immunogenicity.
Jorg J A Calis, Matt Maybeno, Jason A Greenbaum, Daniela Weiskopf, Aruna D De Silva, Alessandro Sette, Can Keşmir, Bjoern Peters. PLoS Comput Biol 2013
350
13

Immunogenicity of somatic mutations in human gastrointestinal cancers.
Eric Tran, Mojgan Ahmadzadeh, Yong-Chen Lu, Alena Gros, Simon Turcotte, Paul F Robbins, Jared J Gartner, Zhili Zheng, Yong F Li, Satyajit Ray,[...]. Science 2015
455
13

Checkpoint blockade cancer immunotherapy targets tumour-specific mutant antigens.
Matthew M Gubin, Xiuli Zhang, Heiko Schuster, Etienne Caron, Jeffrey P Ward, Takuro Noguchi, Yulia Ivanova, Jasreet Hundal, Cora D Arthur, Willem-Jan Krebber,[...]. Nature 2014
13

Cancer immunotherapy. A dendritic cell vaccine increases the breadth and diversity of melanoma neoantigen-specific T cells.
Beatriz M Carreno, Vincent Magrini, Michelle Becker-Hapak, Saghar Kaabinejadian, Jasreet Hundal, Allegra A Petti, Amy Ly, Wen-Rong Lie, William H Hildebrand, Elaine R Mardis,[...]. Science 2015
762
13

PD-1 identifies the patient-specific CD8⁺ tumor-reactive repertoire infiltrating human tumors.
Alena Gros, Paul F Robbins, Xin Yao, Yong F Li, Simon Turcotte, Eric Tran, John R Wunderlich, Arnold Mixon, Shawn Farid, Mark E Dudley,[...]. J Clin Invest 2014
650
13

Adoptive cell transfer as personalized immunotherapy for human cancer.
Steven A Rosenberg, Nicholas P Restifo. Science 2015
13

Evolution of MHC-based technologies used for detection of antigen-responsive T cells.
Amalie Kai Bentzen, Sine Reker Hadrup. Cancer Immunol Immunother 2017
46
28

Empty peptide-receptive MHC class I molecules for efficient detection of antigen-specific T cells.
Sunil Kumar Saini, Tripti Tamhane, Raghavendra Anjanappa, Ankur Saikia, Sofie Ramskov, Marco Donia, Inge Marie Svane, Søren Nyboe Jakobsen, Maria Garcia-Alai, Martin Zacharias,[...]. Sci Immunol 2019
35
37

T-Scan: A Genome-wide Method for the Systematic Discovery of T Cell Epitopes.
Tomasz Kula, Mohammad H Dezfulian, Charlotte I Wang, Nouran S Abdelfattah, Zachary C Hartman, Kai W Wucherpfennig, Herbert Kim Lyerly, Stephen J Elledge. Cell 2019
76
17

Cancer regression and neurological toxicity following anti-MAGE-A3 TCR gene therapy.
Richard A Morgan, Nachimuthu Chinnasamy, Daniel Abate-Daga, Alena Gros, Paul F Robbins, Zhili Zheng, Mark E Dudley, Steven A Feldman, James C Yang, Richard M Sherry,[...]. J Immunother 2013
716
12

T cell antigen discovery via trogocytosis.
Guideng Li, Michael T Bethune, Stephanie Wong, Alok V Joglekar, Michael T Leonard, Jessica K Wang, Jocelyn T Kim, Donghui Cheng, Songming Peng, Jesse M Zaretsky,[...]. Nat Methods 2019
58
20

NY-ESO-1-specific TCR-engineered T cells mediate sustained antigen-specific antitumor effects in myeloma.
Aaron P Rapoport, Edward A Stadtmauer, Gwendolyn K Binder-Scholl, Olga Goloubeva, Dan T Vogl, Simon F Lacey, Ashraf Z Badros, Alfred Garfall, Brendan Weiss, Jeffrey Finklestein,[...]. Nat Med 2015
529
11

High-throughput epitope discovery reveals frequent recognition of neo-antigens by CD4+ T cells in human melanoma.
Carsten Linnemann, Marit M van Buuren, Laura Bies, Els M E Verdegaal, Remko Schotte, Jorg J A Calis, Sam Behjati, Arno Velds, Henk Hilkmann, Dris El Atmioui,[...]. Nat Med 2015
465
11

Efficient identification of mutated cancer antigens recognized by T cells associated with durable tumor regressions.
Yong-Chen Lu, Xin Yao, Jessica S Crystal, Yong F Li, Mona El-Gamil, Colin Gross, Lindy Davis, Mark E Dudley, James C Yang, Yardena Samuels,[...]. Clin Cancer Res 2014
271
11

Identification of unique neoantigen qualities in long-term survivors of pancreatic cancer.
Vinod P Balachandran, Marta Łuksza, Julia N Zhao, Vladimir Makarov, John Alec Moral, Romain Remark, Brian Herbst, Gokce Askan, Umesh Bhanot, Yasin Senbabaoglu,[...]. Nature 2017
545
11

Sensitive and frequent identification of high avidity neo-epitope specific CD8 + T cells in immunotherapy-naive ovarian cancer.
Sara Bobisse, Raphael Genolet, Annalisa Roberti, Janos L Tanyi, Julien Racle, Brian J Stevenson, Christian Iseli, Alexandra Michel, Marie-Aude Le Bitoux, Philippe Guillaume,[...]. Nat Commun 2018
84
13

Signatures of mutational processes in human cancer.
Ludmil B Alexandrov, Serena Nik-Zainal, David C Wedge, Samuel A J R Aparicio, Sam Behjati, Andrew V Biankin, Graham R Bignell, Niccolò Bolli, Ake Borg, Anne-Lise Børresen-Dale,[...]. Nature 2013
11

A pilot trial using lymphocytes genetically engineered with an NY-ESO-1-reactive T-cell receptor: long-term follow-up and correlates with response.
Paul F Robbins, Sadik H Kassim, Thai L N Tran, Jessica S Crystal, Richard A Morgan, Steven A Feldman, James C Yang, Mark E Dudley, John R Wunderlich, Richard M Sherry,[...]. Clin Cancer Res 2015
468
11


Durable complete responses in heavily pretreated patients with metastatic melanoma using T-cell transfer immunotherapy.
Steven A Rosenberg, James C Yang, Richard M Sherry, Udai S Kammula, Marybeth S Hughes, Giao Q Phan, Deborah E Citrin, Nicholas P Restifo, Paul F Robbins, John R Wunderlich,[...]. Clin Cancer Res 2011
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.