A citation-based method for searching scientific literature

Ramachandran Rakesh, Agnel Praveen Joseph, Ramachandra M Bhaskara, Narayanaswamy Srinivasan. RNA Biol 2016
Times Cited: 4







List of co-cited articles
9 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Spliceosome structure and function.
Cindy L Will, Reinhard Lührmann. Cold Spring Harb Perspect Biol 2011
961
75

Molecular Architecture of SF3b and Structural Consequences of Its Cancer-Related Mutations.
Constantin Cretu, Jana Schmitzová, Almudena Ponce-Salvatierra, Olexandr Dybkov, Evelina I De Laurentiis, Kundan Sharma, Cindy L Will, Henning Urlaub, Reinhard Lührmann, Vladimir Pena. Mol Cell 2016
140
50


Identification of SAP155 as the target of GEX1A (Herboxidiene), an antitumor natural product.
Makoto Hasegawa, Tatsuhiro Miura, Kouji Kuzuya, Ayu Inoue, Se Won Ki, Sueharu Horinouchi, Tetsuo Yoshida, Tatsuki Kunoh, Koichi Koseki, Koshiki Mino,[...]. ACS Chem Biol 2011
105
50

The spliceosome: design principles of a dynamic RNP machine.
Markus C Wahl, Cindy L Will, Reinhard Lührmann. Cell 2009
50

Interchangeable SF3B1 inhibitors interfere with pre-mRNA splicing at multiple stages.
Kerstin A Effenberger, Veronica K Urabe, Beth E Prichard, Arun K Ghosh, Melissa S Jurica. RNA 2016
55
50

Splicing factor SF3b as a target of the antitumor natural product pladienolide.
Yoshihiko Kotake, Koji Sagane, Takashi Owa, Yuko Mimori-Kiyosue, Hajime Shimizu, Mai Uesugi, Yasushi Ishihama, Masao Iwata, Yoshiharu Mizui. Nat Chem Biol 2007
423
50

Spliceostatin A targets SF3b and inhibits both splicing and nuclear retention of pre-mRNA.
Daisuke Kaida, Hajime Motoyoshi, Etsu Tashiro, Takayuki Nojima, Masatoshi Hagiwara, Ken Ishigami, Hidenori Watanabe, Takeshi Kitahara, Tatsuhiko Yoshida, Hidenori Nakajima,[...]. Nat Chem Biol 2007
459
50


A U1-U2 snRNP interaction network during intron definition.
Wei Shao, Hyun-Soo Kim, Yang Cao, Yong-Zhen Xu, Charles C Query. Mol Cell Biol 2012
59
25

Association between molecular lesions and specific B-cell receptor subsets in chronic lymphocytic leukemia.
Davide Rossi, Valeria Spina, Riccardo Bomben, Silvia Rasi, Michele Dal-Bo, Alessio Bruscaggin, Francesca Maria Rossi, Sara Monti, Massimo Degan, Carmela Ciardullo,[...]. Blood 2013
97
25

The core spliceosome as target and effector of non-canonical ATM signalling.
Maria Tresini, Daniël O Warmerdam, Petros Kolovos, Loes Snijder, Mischa G Vrouwe, Jeroen A A Demmers, Wilfred F J van IJcken, Frank G Grosveld, René H Medema, Jan H J Hoeijmakers,[...]. Nature 2015
165
25

Spliceosomal DEAH-Box ATPases Remodel Pre-mRNA to Activate Alternative Splice Sites.
Daniel R Semlow, Mario R Blanco, Nils G Walter, Jonathan P Staley. Cell 2016
93
25


ATP requirement for Prp5p function is determined by Cus2p and the structure of U2 small nuclear RNA.
Rhonda Perriman, Imre Barta, Gia K Voeltz, John Abelson, Manuel Ares. Proc Natl Acad Sci U S A 2003
60
25

Searching yeast intron data at Ares lab Web site.
Leslie Grate, Manuel Ares. Methods Enzymol 2002
39
25


Functional roles of DExD/H-box RNA helicases in Pre-mRNA splicing.
Yen-Chi Liu, Soo-Chen Cheng. J Biomed Sci 2015
31
25




The survival motor neuron protein in spinal muscular atrophy.
D D Coovert, T T Le, P E McAndrew, J Strasswimmer, T O Crawford, J R Mendell, S E Coulson, E J Androphy, T W Prior, A H Burghes. Hum Mol Genet 1997
557
25

Mutations in the pre-mRNA splicing factor gene PRPC8 in autosomal dominant retinitis pigmentosa (RP13).
A B McKie, J C McHale, T J Keen, E E Tarttelin, R Goliath, J J van Lith-Verhoeven, J Greenberg, R S Ramesar, C B Hoyng, F P Cremers,[...]. Hum Mol Genet 2001
214
25

Sequencing of lariat termini in S. cerevisiae reveals 5' splice sites, branch points, and novel splicing events.
Daoming Qin, Lei Huang, Alissa Wlodaver, Jorge Andrade, Jonathan P Staley. RNA 2016
22
25

Identification of new branch points and unconventional introns in Saccharomyces cerevisiae.
Genevieve M Gould, Joseph M Paggi, Yuchun Guo, David V Phizicky, Boris Zinshteyn, Eric T Wang, Wendy V Gilbert, David K Gifford, Christopher B Burge. RNA 2016
23
25


SF3B1 mutations in chronic lymphocytic leukemia.
Youzhong Wan, Catherine J Wu. Blood 2013
78
25

Exome sequencing identifies recurrent somatic mutations in EIF1AX and SF3B1 in uveal melanoma with disomy 3.
Marcel Martin, Lars Maßhöfer, Petra Temming, Sven Rahmann, Claudia Metz, Norbert Bornfeld, Johannes van de Nes, Ludger Klein-Hitpass, Alan G Hinnebusch, Bernhard Horsthemke,[...]. Nat Genet 2013
326
25

Dynamic Contacts of U2, RES, Cwc25, Prp8 and Prp45 Proteins with the Pre-mRNA Branch-Site and 3' Splice Site during Catalytic Activation and Step 1 Catalysis in Yeast Spliceosomes.
Cornelius Schneider, Dmitry E Agafonov, Jana Schmitzová, Klaus Hartmuth, Patrizia Fabrizio, Reinhard Lührmann. PLoS Genet 2015
29
25

Exome sequencing identifies recurrent mutations of the splicing factor SF3B1 gene in chronic lymphocytic leukemia.
Víctor Quesada, Laura Conde, Neus Villamor, Gonzalo R Ordóñez, Pedro Jares, Laia Bassaganyas, Andrew J Ramsay, Sílvia Beà, Magda Pinyol, Alejandra Martínez-Trillos,[...]. Nat Genet 2011
732
25


Structure of a yeast activated spliceosome at 3.5 Å resolution.
Chuangye Yan, Ruixue Wan, Rui Bai, Gaoxingyu Huang, Yigong Shi. Science 2016
185
25

Molecular architecture of the Saccharomyces cerevisiae activated spliceosome.
Reinhard Rauhut, Patrizia Fabrizio, Olexandr Dybkov, Klaus Hartmuth, Vladimir Pena, Ashwin Chari, Vinay Kumar, Chung-Tien Lee, Henning Urlaub, Berthold Kastner,[...]. Science 2016
130
25





Release of SF3 from the intron branchpoint activates the first step of pre-mRNA splicing.
Rea M Lardelli, James X Thompson, John R Yates, Scott W Stevens. RNA 2010
126
25

A human homolog of yeast pre-mRNA splicing gene, PRP31, underlies autosomal dominant retinitis pigmentosa on chromosome 19q13.4 (RP11).
E N Vithana, L Abu-Safieh, M J Allen, A Carey, M Papaioannou, C Chakarova, M Al-Maghtheh, N D Ebenezer, C Willis, A T Moore,[...]. Mol Cell 2001
254
25


Multiple U2AF65 binding sites within SF3b155: thermodynamic and spectroscopic characterization of protein-protein interactions among pre-mRNA splicing factors.
Karen R Thickman, Matthew C Swenson, Joseph M Kabogo, Zygmunt Gryczynski, Clara L Kielkopf. J Mol Biol 2006
57
25

Cancer-Associated SF3B1 Hotspot Mutations Induce Cryptic 3' Splice Site Selection through Use of a Different Branch Point.
Rachel B Darman, Michael Seiler, Anant A Agrawal, Kian H Lim, Shouyong Peng, Daniel Aird, Suzanna L Bailey, Erica B Bhavsar, Betty Chan, Simona Colla,[...]. Cell Rep 2015
275
25

The target of the DEAH-box NTP triphosphatase Prp43 in Saccharomyces cerevisiae spliceosomes is the U2 snRNP-intron interaction.
Jean-Baptiste Fourmann, Olexandr Dybkov, Dmitry E Agafonov, Marcel J Tauchert, Henning Urlaub, Ralf Ficner, Patrizia Fabrizio, Reinhard Lührmann. Elife 2016
30
25

PRP5: a helicase-like protein required for mRNA splicing in yeast.
G Dalbadie-McFarland, J Abelson. Proc Natl Acad Sci U S A 1990
114
25



A phosphatase complex that dephosphorylates gammaH2AX regulates DNA damage checkpoint recovery.
Michael-Christopher Keogh, Jung-Ae Kim, Michael Downey, Jeffrey Fillingham, Dipanjan Chowdhury, Jacob C Harrison, Megumi Onishi, Nira Datta, Sarah Galicia, Andrew Emili,[...]. Nature 2006
367
25

Transcriptome sequencing reveals potential mechanism of cryptic 3' splice site selection in SF3B1-mutated cancers.
Christopher DeBoever, Emanuela M Ghia, Peter J Shepard, Laura Rassenti, Christian L Barrett, Kristen Jepsen, Catriona H M Jamieson, Dennis Carson, Thomas J Kipps, Kelly A Frazer. PLoS Comput Biol 2015
145
25

Crystal structure of Prp5p reveals interdomain interactions that impact spliceosome assembly.
Zhi-Min Zhang, Fei Yang, Jinru Zhang, Qing Tang, Jie Li, Jing Gu, Jiahai Zhou, Yong-Zhen Xu. Cell Rep 2013
20
25

RNA splicing factors as oncoproteins and tumour suppressors.
Heidi Dvinge, Eunhee Kim, Omar Abdel-Wahab, Robert K Bradley. Nat Rev Cancer 2016
392
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.