A citation-based method for searching scientific literature

Anthony Sanchez, Angelo De Vivo, Nadima Uprety, Jonghwan Kim, Stanley M Stevens, Younghoon Kee. Proc Natl Acad Sci U S A 2016
Times Cited: 33







List of co-cited articles
555 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



ATM-dependent chromatin changes silence transcription in cis to DNA double-strand breaks.
Niraj M Shanbhag, Ilona U Rafalska-Metcalf, Carlo Balane-Bolivar, Susan M Janicki, Roger A Greenberg. Cell 2010
471
39

Requirement for PBAF in transcriptional repression and repair at DNA breaks in actively transcribed regions of chromatin.
Andreas Kakarougkas, Amani Ismail, Anna L Chambers, Enriqueta Riballo, Alex D Herbert, Julia Künzel, Markus Löbrich, Penny A Jeggo, Jessica A Downs. Mol Cell 2014
167
36

A chromatin localization screen reveals poly (ADP ribose)-regulated recruitment of the repressive polycomb and NuRD complexes to sites of DNA damage.
Danny M Chou, Britt Adamson, Noah E Dephoure, Xu Tan, Amanda C Nottke, Kristen E Hurov, Steven P Gygi, Monica P Colaiácovo, Stephen J Elledge. Proc Natl Acad Sci U S A 2010
376
36

Screen identifies bromodomain protein ZMYND8 in chromatin recognition of transcription-associated DNA damage that promotes homologous recombination.
Fade Gong, Li-Ya Chiu, Ben Cox, François Aymard, Thomas Clouaire, Justin W Leung, Michael Cammarata, Mercedes Perez, Poonam Agarwal, Jennifer S Brodbelt,[...]. Genes Dev 2015
136
33

Acetylation limits 53BP1 association with damaged chromatin to promote homologous recombination.
Jiangbo Tang, Nam Woo Cho, Gaofeng Cui, Erica M Manion, Niraj M Shanbhag, Maria Victoria Botuyan, Georges Mer, Roger A Greenberg. Nat Struct Mol Biol 2013
311
33

DNAPKcs-dependent arrest of RNA polymerase II transcription in the presence of DNA breaks.
Tibor Pankotai, Céline Bonhomme, David Chen, Evi Soutoglou. Nat Struct Mol Biol 2012
150
30

BMI1 is recruited to DNA breaks and contributes to DNA damage-induced H2A ubiquitination and repair.
Vasudeva Ginjala, Karim Nacerddine, Atul Kulkarni, Jay Oza, Sarah J Hill, Ming Yao, Elisabetta Citterio, Maarten van Lohuizen, Shridar Ganesan. Mol Cell Biol 2011
180
30

Enhanced chromatin dynamics by FACT promotes transcriptional restart after UV-induced DNA damage.
Christoffel Dinant, Giannis Ampatziadis-Michailidis, Hannes Lans, Maria Tresini, Anna Lagarou, Malgorzata Grosbart, Arjan F Theil, Wiggert A van Cappellen, Hiroshi Kimura, Jiri Bartek,[...]. Mol Cell 2013
101
27

NELF-E is recruited to DNA double-strand break sites to promote transcriptional repression and repair.
Samah W Awwad, Enas R Abu-Zhayia, Noga Guttmann-Raviv, Nabieh Ayoub. EMBO Rep 2017
42
27


DNA double-strand breaks promote methylation of histone H3 on lysine 9 and transient formation of repressive chromatin.
Marina K Ayrapetov, Ozge Gursoy-Yuzugullu, Chang Xu, Ye Xu, Brendan D Price. Proc Natl Acad Sci U S A 2014
203
24

BMI1-mediated histone ubiquitylation promotes DNA double-strand break repair.
Ismail Hassan Ismail, Christi Andrin, Darin McDonald, Michael J Hendzel. J Cell Biol 2010
199
24

Histone demethylase KDM5A regulates the ZMYND8-NuRD chromatin remodeler to promote DNA repair.
Fade Gong, Thomas Clouaire, Marion Aguirrebengoa, Gaëlle Legube, Kyle M Miller. J Cell Biol 2017
80
24

PARP1-dependent recruitment of the FBXL10-RNF68-RNF2 ubiquitin ligase to sites of DNA damage controls H2A.Z loading.
Gergely Rona, Domenico Roberti, Yandong Yin, Julia K Pagan, Harrison Homer, Elizabeth Sassani, Andras Zeke, Luca Busino, Eli Rothenberg, Michele Pagano. Elife 2018
22
36

Comprehensive Mapping of Histone Modifications at DNA Double-Strand Breaks Deciphers Repair Pathway Chromatin Signatures.
Thomas Clouaire, Vincent Rocher, Anahita Lashgari, Coline Arnould, Marion Aguirrebengoa, Anna Biernacka, Magdalena Skrzypczak, François Aymard, Bernard Fongang, Norbert Dojer,[...]. Mol Cell 2018
94
24

TRIP12 and UBR5 suppress spreading of chromatin ubiquitylation at damaged chromosomes.
Thorkell Gudjonsson, Matthias Altmeyer, Velibor Savic, Luis Toledo, Christoffel Dinant, Merete Grøfte, Jirina Bartkova, Maria Poulsen, Yasuyoshi Oka, Simon Bekker-Jensen,[...]. Cell 2012
215
21

Polycomb repressive complex 2 contributes to DNA double-strand break repair.
Stuart Campbell, Ismail Hassan Ismail, Leah C Young, Guy G Poirier, Michael J Hendzel. Cell Cycle 2013
90
21

RNF168 ubiquitinates K13-15 on H2A/H2AX to drive DNA damage signaling.
Francesca Mattiroli, Joseph H A Vissers, Willem J van Dijk, Pauline Ikpa, Elisabetta Citterio, Wim Vermeulen, Jurgen A Marteijn, Titia K Sixma. Cell 2012
391
21

Transcriptionally active chromatin recruits homologous recombination at DNA double-strand breaks.
François Aymard, Beatrix Bugler, Christine K Schmidt, Emmanuelle Guillou, Pierre Caron, Sébastien Briois, Jason S Iacovoni, Virginie Daburon, Kyle M Miller, Stephen P Jackson,[...]. Nat Struct Mol Biol 2014
347
21

A macrohistone variant links dynamic chromatin compaction to BRCA1-dependent genome maintenance.
Simran Khurana, Michael J Kruhlak, Jeongkyu Kim, Andy D Tran, Jinping Liu, Katherine Nyswaner, Lei Shi, Parthav Jailwala, Myong-Hee Sung, Ofir Hakim,[...]. Cell Rep 2014
129
18

The DNA damage response: making it safe to play with knives.
Alberto Ciccia, Stephen J Elledge. Mol Cell 2010
18

Histone H1 couples initiation and amplification of ubiquitin signalling after DNA damage.
Tina Thorslund, Anita Ripplinger, Saskia Hoffmann, Thomas Wild, Michael Uckelmann, Bine Villumsen, Takeo Narita, Titia K Sixma, Chunaram Choudhary, Simon Bekker-Jensen,[...]. Nature 2015
218
18

Repression of Transcription at DNA Breaks Requires Cohesin throughout Interphase and Prevents Genome Instability.
Cornelia Meisenberg, Sarah I Pinder, Suzanna R Hopkins, Sarah K Wooller, Graeme Benstead-Hume, Frances M G Pearl, Penny A Jeggo, Jessica A Downs. Mol Cell 2019
53
18

DNA repair and recovery of RNA synthesis following exposure to ultraviolet light are delayed in long genes.
Leonardo C Andrade-Lima, Artur Veloso, Michelle T Paulsen, Carlos F M Menck, Mats Ljungman. Nucleic Acids Res 2015
43
15

UV-induced inhibition of transcription involves repression of transcription initiation and phosphorylation of RNA polymerase II.
D A Rockx, R Mason, A van Hoffen, M C Barton, E Citterio, D B Bregman, A A van Zeeland, H Vrieling, L H Mullenders. Proc Natl Acad Sci U S A 2000
140
15

DNA damage regulates alternative splicing through inhibition of RNA polymerase II elongation.
Manuel J Muñoz, M Soledad Pérez Santangelo, Maria P Paronetto, Manuel de la Mata, Federico Pelisch, Stéphanie Boireau, Kira Glover-Cutter, Claudia Ben-Dov, Matías Blaustein, Juan J Lozano,[...]. Cell 2009
216
15

Regulation of DNA double-strand break repair by ubiquitin and ubiquitin-like modifiers.
Petra Schwertman, Simon Bekker-Jensen, Niels Mailand. Nat Rev Mol Cell Biol 2016
183
15

ZMYND8 Co-localizes with NuRD on Target Genes and Regulates Poly(ADP-Ribose)-Dependent Recruitment of GATAD2A/NuRD to Sites of DNA Damage.
Cornelia G Spruijt, Martijn S Luijsterburg, Roberta Menafra, Rik G H Lindeboom, Pascal W T C Jansen, Raghu Ram Edupuganti, Marijke P Baltissen, Wouter W Wiegant, Moritz C Voelker-Albert, Filomena Matarese,[...]. Cell Rep 2016
59
15

The DNA-damage response in human biology and disease.
Stephen P Jackson, Jiri Bartek. Nature 2009
15

Histone demethylase KDM5B is a key regulator of genome stability.
Xin Li, Ling Liu, Shangda Yang, Nan Song, Xing Zhou, Jie Gao, Na Yu, Lin Shan, Qian Wang, Jing Liang,[...]. Proc Natl Acad Sci U S A 2014
78
15

Functional Roles of the E3 Ubiquitin Ligase UBR5 in Cancer.
Robert F Shearer, Mary Iconomou, Colin K W Watts, Darren N Saunders. Mol Cancer Res 2015
58
15


Histone methyltransferase DOT1L drives recovery of gene expression after a genotoxic attack.
Valentyn Oksenych, Alexander Zhovmer, Salim Ziani, Pierre-Olivier Mari, Jitka Eberova, Tiziana Nardo, Miria Stefanini, Giuseppina Giglia-Mari, Jean-Marc Egly, Frédéric Coin. PLoS Genet 2013
53
15

Acetylation by Tip60 is required for selective histone variant exchange at DNA lesions.
Thomas Kusch, Laurence Florens, W Hayes Macdonald, Selene K Swanson, Robert L Glaser, John R Yates, Susan M Abmayr, Michael P Washburn, Jerry L Workman. Science 2004
501
15

Role of histone H2A ubiquitination in Polycomb silencing.
Hengbin Wang, Liangjun Wang, Hediye Erdjument-Bromage, Miguel Vidal, Paul Tempst, Richard S Jones, Yi Zhang. Nature 2004
15

Transcription-replication encounters, consequences and genomic instability.
Anne Helmrich, Monica Ballarino, Evgeny Nudler, Laszlo Tora. Nat Struct Mol Biol 2013
172
15

Regulation of homologous recombination by RNF20-dependent H2B ubiquitination.
Kyosuke Nakamura, Akihiro Kato, Junya Kobayashi, Hiromi Yanagihara, Shuichi Sakamoto, Douglas V N P Oliveira, Mikio Shimada, Hiroshi Tauchi, Hidekazu Suzuki, Satoshi Tashiro,[...]. Mol Cell 2011
231
15

Histone H3 methylation links DNA damage detection to activation of the tumour suppressor Tip60.
Yingli Sun, Xiaofeng Jiang, Ye Xu, Marina K Ayrapetov, Lisa A Moreau, Johnathan R Whetstine, Brendan D Price. Nat Cell Biol 2009
300
15

Requirement of ATM-dependent monoubiquitylation of histone H2B for timely repair of DNA double-strand breaks.
Lilach Moyal, Yaniv Lerenthal, Mali Gana-Weisz, Gilad Mass, Sairei So, Shih-Ya Wang, Berina Eppink, Young Min Chung, Gil Shalev, Efrat Shema,[...]. Mol Cell 2011
257
15

SETD2-dependent histone H3K36 trimethylation is required for homologous recombination repair and genome stability.
Sophia X Pfister, Sara Ahrabi, Lykourgos-Panagiotis Zalmas, Sovan Sarkar, François Aymard, Csanád Z Bachrati, Thomas Helleday, Gaëlle Legube, Nicholas B La Thangue, Andrew C G Porter,[...]. Cell Rep 2014
250
15

53BP1 is a reader of the DNA-damage-induced H2A Lys 15 ubiquitin mark.
Amélie Fradet-Turcotte, Marella D Canny, Cristina Escribano-Díaz, Alexandre Orthwein, Charles C Y Leung, Hao Huang, Marie-Claude Landry, Julianne Kitevski-LeBlanc, Sylvie M Noordermeer, Frank Sicheri,[...]. Nature 2013
407
15

LEDGF (p75) promotes DNA-end resection and homologous recombination.
Mads Daugaard, Annika Baude, Kasper Fugger, Lou Klitgaard Povlsen, Halfdan Beck, Claus Storgaard Sørensen, Nikolaj H T Petersen, Poul H B Sorensen, Claudia Lukas, Jiri Bartek,[...]. Nat Struct Mol Biol 2012
118
15

Orchestration of the DNA-damage response by the RNF8 ubiquitin ligase.
Nadine K Kolas, J Ross Chapman, Shinichiro Nakada, Jarkko Ylanko, Richard Chahwan, Frédéric D Sweeney, Stephanie Panier, Megan Mendez, Jan Wildenhain, Timothy M Thomson,[...]. Science 2007
667
15

Human Rad52 Promotes XPG-Mediated R-loop Processing to Initiate Transcription-Associated Homologous Recombination Repair.
Takaaki Yasuhara, Reona Kato, Yoshihiko Hagiwara, Bunsyo Shiotani, Motohiro Yamauchi, Shinichiro Nakada, Atsushi Shibata, Kiyoshi Miyagawa. Cell 2018
122
15

A damaged genome's transcriptional landscape through multilayered expression profiling around in situ-mapped DNA double-strand breaks.
Fabio Iannelli, Alessandro Galbiati, Ilaria Capozzo, Quan Nguyen, Brian Magnuson, Flavia Michelini, Giuseppina D'Alessandro, Matteo Cabrini, Marco Roncador, Sofia Francia,[...]. Nat Commun 2017
52
15

The OTUD5-UBR5 complex regulates FACT-mediated transcription at damaged chromatin.
Angelo de Vivo, Anthony Sanchez, Jose Yegres, Jeonghyeon Kim, Sylvia Emly, Younghoon Kee. Nucleic Acids Res 2019
21
23

Cockayne syndrome B protein regulates the transcriptional program after UV irradiation.
Luca Proietti-De-Santis, Pascal Drané, Jean-Marc Egly. EMBO J 2006
114
12

Ubiquitylation and degradation of elongating RNA polymerase II: the last resort.
Marcus D Wilson, Michelle Harreman, Jesper Q Svejstrup. Biochim Biophys Acta 2013
102
12

Site-specific DICER and DROSHA RNA products control the DNA-damage response.
Sofia Francia, Flavia Michelini, Alka Saxena, Dave Tang, Michiel de Hoon, Viviana Anelli, Marina Mione, Piero Carninci, Fabrizio d'Adda di Fagagna. Nature 2012
332
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.