A citation-based method for searching scientific literature

Roby Joehanes, Allan C Just, Riccardo E Marioni, Luke C Pilling, Lindsay M Reynolds, Pooja R Mandaviya, Weihua Guan, Tao Xu, Cathy E Elks, Stella Aslibekyan, Hortensia Moreno-Macias, Jennifer A Smith, Jennifer A Brody, Radhika Dhingra, Paul Yousefi, James S Pankow, Sonja Kunze, Sonia H Shah, Allan F McRae, Kurt Lohman, Jin Sha, Devin M Absher, Luigi Ferrucci, Wei Zhao, Ellen W Demerath, Jan Bressler, Megan L Grove, Tianxiao Huan, Chunyu Liu, Michael M Mendelson, Chen Yao, Douglas P Kiel, Annette Peters, Rui Wang-Sattler, Peter M Visscher, Naomi R Wray, John M Starr, Jingzhong Ding, Carlos J Rodriguez, Nicholas J Wareham, Marguerite R Irvin, Degui Zhi, Myrto Barrdahl, Paolo Vineis, Srikant Ambatipudi, André G Uitterlinden, Albert Hofman, Joel Schwartz, Elena Colicino, Lifang Hou, Pantel S Vokonas, Dena G Hernandez, Andrew B Singleton, Stefania Bandinelli, Stephen T Turner, Erin B Ware, Alicia K Smith, Torsten Klengel, Elisabeth B Binder, Bruce M Psaty, Kent D Taylor, Sina A Gharib, Brenton R Swenson, Liming Liang, Dawn L DeMeo, George T O'Connor, Zdenko Herceg, Kerry J Ressler, Karen N Conneely, Nona Sotoodehnia, Sharon L R Kardia, David Melzer, Andrea A Baccarelli, Joyce B J van Meurs, Isabelle Romieu, Donna K Arnett, Ken K Ong, Yongmei Liu, Melanie Waldenberger, Ian J Deary, Myriam Fornage, Daniel Levy, Stephanie J London. Circ Cardiovasc Genet 2016
Times Cited: 338







List of co-cited articles
653 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


DNA methylation arrays as surrogate measures of cell mixture distribution.
Eugene Andres Houseman, William P Accomando, Devin C Koestler, Brock C Christensen, Carmen J Marsit, Heather H Nelson, John K Wiencke, Karl T Kelsey. BMC Bioinformatics 2012
28

Tobacco smoking leads to extensive genome-wide changes in DNA methylation.
Sonja Zeilinger, Brigitte Kühnel, Norman Klopp, Hansjörg Baurecht, Anja Kleinschmidt, Christian Gieger, Stephan Weidinger, Eva Lattka, Jerzy Adamski, Annette Peters,[...]. PLoS One 2013
453
22

Epigenome-wide association study of body mass index, and the adverse outcomes of adiposity.
Simone Wahl, Alexander Drong, Benjamin Lehne, Marie Loh, William R Scott, Sonja Kunze, Pei-Chien Tsai, Janina S Ried, Weihua Zhang, Youwen Yang,[...]. Nature 2017
387
20

A DNA methylation biomarker of alcohol consumption.
C Liu, R E Marioni, Å K Hedman, L Pfeiffer, P-C Tsai, L M Reynolds, A C Just, Q Duan, C G Boer, T Tanaka,[...]. Mol Psychiatry 2018
130
19


Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.
Martin J Aryee, Andrew E Jaffe, Hector Corrada-Bravo, Christine Ladd-Acosta, Andrew P Feinberg, Kasper D Hansen, Rafael A Irizarry. Bioinformatics 2014
19


Association of Body Mass Index with DNA Methylation and Gene Expression in Blood Cells and Relations to Cardiometabolic Disease: A Mendelian Randomization Approach.
Michael M Mendelson, Riccardo E Marioni, Roby Joehanes, Chunyu Liu, Åsa K Hedman, Stella Aslibekyan, Ellen W Demerath, Weihua Guan, Degui Zhi, Chen Yao,[...]. PLoS Med 2017
125
13

Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling.
Ruth Pidsley, Elena Zotenko, Timothy J Peters, Mitchell G Lawrence, Gail P Risbridger, Peter Molloy, Susan Van Djik, Beverly Muhlhausler, Clare Stirzaker, Susan J Clark. Genome Biol 2016
370
13

Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray.
Yi-an Chen, Mathieu Lemire, Sanaa Choufani, Darci T Butcher, Daria Grafodatskaya, Brent W Zanke, Steven Gallinger, Thomas J Hudson, Rosanna Weksberg. Epigenetics 2013
809
12

DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases.
Symen Ligthart, Carola Marzi, Stella Aslibekyan, Michael M Mendelson, Karen N Conneely, Toshiko Tanaka, Elena Colicino, Lindsay L Waite, Roby Joehanes, Weihua Guan,[...]. Genome Biol 2016
126
12

Genome-wide methylation profiles reveal quantitative views of human aging rates.
Gregory Hannum, Justin Guinney, Ling Zhao, Li Zhang, Guy Hughes, SriniVas Sadda, Brandy Klotzle, Marina Bibikova, Jian-Bing Fan, Yuan Gao,[...]. Mol Cell 2013
12

Hypomethylation of smoking-related genes is associated with future lung cancer in four prospective cohorts.
Francesca Fasanelli, Laura Baglietto, Erica Ponzi, Florence Guida, Gianluca Campanella, Mattias Johansson, Kjell Grankvist, Mikael Johansson, Manuela Bianca Assumma, Alessio Naccarati,[...]. Nat Commun 2015
117
12

Tobacco smoking-associated genome-wide DNA methylation changes in the EPIC study.
Srikant Ambatipudi, Cyrille Cuenin, Hector Hernandez-Vargas, Akram Ghantous, Florence Le Calvez-Kelm, Rudolf Kaaks, Myrto Barrdahl, Heiner Boeing, Krasimira Aleksandrova, Antonia Trichopoulou,[...]. Epigenomics 2016
125
12

A data-driven approach to preprocessing Illumina 450K methylation array data.
Ruth Pidsley, Chloe C Y Wong, Manuela Volta, Katie Lunnon, Jonathan Mill, Leonard C Schalkwyk. BMC Genomics 2013
491
11

Disease variants alter transcription factor levels and methylation of their binding sites.
Marc Jan Bonder, René Luijk, Daria V Zhernakova, Matthijs Moed, Patrick Deelen, Martijn Vermaat, Maarten van Iterson, Freerk van Dijk, Michiel van Galen, Jan Bot,[...]. Nat Genet 2017
200
11

Dynamics of smoking-induced genome-wide methylation changes with time since smoking cessation.
Florence Guida, Torkjel M Sandanger, Raphaële Castagné, Gianluca Campanella, Silvia Polidoro, Domenico Palli, Vittorio Krogh, Rosario Tumino, Carlotta Sacerdote, Salvatore Panico,[...]. Hum Mol Genet 2015
158
11

Cigarette smoking reduces DNA methylation levels at multiple genomic loci but the effect is partially reversible upon cessation.
Loukia G Tsaprouni, Tsun-Po Yang, Jordana Bell, Katherine J Dick, Stavroula Kanoni, James Nisbet, Ana Viñuela, Elin Grundberg, Christopher P Nelson, Eshwar Meduri,[...]. Epigenetics 2014
182
11

Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis.
Pan Du, Xiao Zhang, Chiang-Ching Huang, Nadereh Jafari, Warren A Kibbe, Lifang Hou, Simon M Lin. BMC Bioinformatics 2010
981
11

AHRR (cg05575921) hypomethylation marks smoking behaviour, morbidity and mortality.
Stig E Bojesen, Nicholas Timpson, Caroline Relton, George Davey Smith, Børge G Nordestgaard. Thorax 2017
61
18

An epigenetic biomarker of aging for lifespan and healthspan.
Morgan E Levine, Ake T Lu, Austin Quach, Brian H Chen, Themistocles L Assimes, Stefania Bandinelli, Lifang Hou, Andrea A Baccarelli, James D Stewart, Yun Li,[...]. Aging (Albany NY) 2018
402
10

DNA Methylation in Newborns and Maternal Smoking in Pregnancy: Genome-wide Consortium Meta-analysis.
Bonnie R Joubert, Janine F Felix, Paul Yousefi, Kelly M Bakulski, Allan C Just, Carrie Breton, Sarah E Reese, Christina A Markunas, Rebecca C Richmond, Cheng-Jian Xu,[...]. Am J Hum Genet 2016
369
10

Differences in smoking associated DNA methylation patterns in South Asians and Europeans.
Hannah R Elliott, Therese Tillin, Wendy L McArdle, Karen Ho, Aparna Duggirala, Tim M Frayling, George Davey Smith, Alun D Hughes, Nish Chaturvedi, Caroline L Relton. Clin Epigenetics 2014
145
9

Epigenome-wide association study in the European Prospective Investigation into Cancer and Nutrition (EPIC-Turin) identifies novel genetic loci associated with smoking.
Natalie S Shenker, Silvia Polidoro, Karin van Veldhoven, Carlotta Sacerdote, Fulvio Ricceri, Mark A Birrell, Maria G Belvisi, Robert Brown, Paolo Vineis, James M Flanagan. Hum Mol Genet 2013
270
9

450K epigenome-wide scan identifies differential DNA methylation in newborns related to maternal smoking during pregnancy.
Bonnie R Joubert, Siri E Håberg, Roy M Nilsen, Xuting Wang, Stein E Vollset, Susan K Murphy, Zhiqing Huang, Cathrine Hoyo, Øivind Midttun, Lea A Cupul-Uicab,[...]. Environ Health Perspect 2012
458
9

The sva package for removing batch effects and other unwanted variation in high-throughput experiments.
Jeffrey T Leek, W Evan Johnson, Hilary S Parker, Andrew E Jaffe, John D Storey. Bioinformatics 2012
9

missMethyl: an R package for analyzing data from Illumina's HumanMethylation450 platform.
Belinda Phipson, Jovana Maksimovic, Alicia Oshlack. Bioinformatics 2016
211
9



Tobacco-smoking-related differential DNA methylation: 27K discovery and replication.
Lutz P Breitling, Rongxi Yang, Bernhard Korn, Barbara Burwinkel, Hermann Brenner. Am J Hum Genet 2011
435
8

A coherent approach for analysis of the Illumina HumanMethylation450 BeadChip improves data quality and performance in epigenome-wide association studies.
Benjamin Lehne, Alexander W Drong, Marie Loh, Weihua Zhang, William R Scott, Sian-Tsung Tan, Uzma Afzal, James Scott, Marjo-Riitta Jarvelin, Paul Elliott,[...]. Genome Biol 2015
150
8

Demethylation of the aryl hydrocarbon receptor repressor as a biomarker for nascent smokers.
Robert A Philibert, Steven R H Beach, Gene H Brody. Epigenetics 2012
109
8

Genome-Wide Analysis of DNA Methylation and Cigarette Smoking in a Chinese Population.
Xiaoyan Zhu, Jun Li, Siyun Deng, Kuai Yu, Xuezhen Liu, Qifei Deng, Huizhen Sun, Xiaomin Zhang, Meian He, Huan Guo,[...]. Environ Health Perspect 2016
55
14

METAL: fast and efficient meta-analysis of genomewide association scans.
Cristen J Willer, Yun Li, Gonçalo R Abecasis. Bioinformatics 2010
8

Cigarette smoking behaviors and time since quitting are associated with differential DNA methylation across the human genome.
Emily S Wan, Weiliang Qiu, Andrea Baccarelli, Vincent J Carey, Helene Bacherman, Stephen I Rennard, Alvar Agusti, Wayne Anderson, David A Lomas, Dawn L Demeo. Hum Mol Genet 2012
210
7

The dynamics of smoking-related disturbed methylation: a two time-point study of methylation change in smokers, non-smokers and former smokers.
Rory Wilson, Simone Wahl, Liliane Pfeiffer, Cavin K Ward-Caviness, Sonja Kunze, Anja Kretschmer, Eva Reischl, Annette Peters, Christian Gieger, Melanie Waldenberger. BMC Genomics 2017
37
18

Epigenome-wide association of DNA methylation markers in peripheral blood from Indian Asians and Europeans with incident type 2 diabetes: a nested case-control study.
John C Chambers, Marie Loh, Benjamin Lehne, Alexander Drong, Jennifer Kriebel, Valeria Motta, Simone Wahl, Hannah R Elliott, Federica Rota, William R Scott,[...]. Lancet Diabetes Endocrinol 2015
215
7

Epigenome-wide association study (EWAS) of BMI, BMI change and waist circumference in African American adults identifies multiple replicated loci.
Ellen W Demerath, Weihua Guan, Megan L Grove, Stella Aslibekyan, Michael Mendelson, Yi-Hui Zhou, Åsa K Hedman, Johanna K Sandling, Li-An Li, Marguerite R Irvin,[...]. Hum Mol Genet 2015
180
7

Meffil: efficient normalization and analysis of very large DNA methylation datasets.
J L Min, G Hemani, G Davey Smith, C Relton, M Suderman. Bioinformatics 2018
46
15

Epigenetic prediction of complex traits and death.
Daniel L McCartney, Robert F Hillary, Anna J Stevenson, Stuart J Ritchie, Rosie M Walker, Qian Zhang, Stewart W Morris, Mairead L Bermingham, Archie Campbell, Alison D Murray,[...]. Genome Biol 2018
38
18


DNA methylation links prenatal smoking exposure to later life health outcomes in offspring.
Petri Wiklund, Ville Karhunen, Rebecca C Richmond, Priyanka Parmar, Alina Rodriguez, Maneka De Silva, Matthias Wielscher, Faisal I Rezwan, Tom G Richardson, Juha Veijola,[...]. Clin Epigenetics 2019
25
28

Cohort Profile: Generation Scotland: Scottish Family Health Study (GS:SFHS). The study, its participants and their potential for genetic research on health and illness.
Blair H Smith, Archie Campbell, Pamela Linksted, Bridie Fitzpatrick, Cathy Jackson, Shona M Kerr, Ian J Deary, Donald J Macintyre, Harry Campbell, Mark McGilchrist,[...]. Int J Epidemiol 2013
156
7

Smoking induces coordinated DNA methylation and gene expression changes in adipose tissue with consequences for metabolic health.
Pei-Chien Tsai, Craig A Glastonbury, Melissa N Eliot, Sailalitha Bollepalli, Idil Yet, Juan E Castillo-Fernandez, Elena Carnero-Montoro, Thomas Hardiman, Tiphaine C Martin, Alice Vickers,[...]. Clin Epigenetics 2018
39
17

Systematic identification of genetic influences on methylation across the human life course.
Tom R Gaunt, Hashem A Shihab, Gibran Hemani, Josine L Min, Geoff Woodward, Oliver Lyttleton, Jie Zheng, Aparna Duggirala, Wendy L McArdle, Karen Ho,[...]. Genome Biol 2016
255
6

DNA methylation changes measured in pre-diagnostic peripheral blood samples are associated with smoking and lung cancer risk.
Laura Baglietto, Erica Ponzi, Philip Haycock, Allison Hodge, Manuela Bianca Assumma, Chol-Hee Jung, Jessica Chung, Francesca Fasanelli, Florence Guida, Gianluca Campanella,[...]. Int J Cancer 2017
64
9

CpG sites associated with cigarette smoking: analysis of epigenome-wide data from the Sister Study.
Sophia Harlid, Zongli Xu, Vijayalakshmi Panduri, Dale P Sandler, Jack A Taylor. Environ Health Perspect 2014
73
8

The effect of smoking on DNA methylation of peripheral blood mononuclear cells from African American women.
Meeshanthini V Dogan, Bridget Shields, Carolyn Cutrona, Long Gao, Frederick X Gibbons, Ronald Simons, Martha Monick, Gene H Brody, Kai Tan, Steven R H Beach,[...]. BMC Genomics 2014
148
6

Identification and validation of seven new loci showing differential DNA methylation related to serum lipid profile: an epigenome-wide approach. The REGICOR study.
S Sayols-Baixeras, I Subirana, C Lluis-Ganella, F Civeira, J Roquer, A N Do, D Absher, A Cenarro, D Muñoz, C Soriano-Tárraga,[...]. Hum Mol Genet 2016
46
13

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.