A citation-based method for searching scientific literature

Gladys Arreaza, Ping Qiu, Ling Pang, Andrew Albright, Lewis Z Hong, Matthew J Marton, Diane Levitan. Int J Mol Sci 2016
Times Cited: 27







List of co-cited articles
103 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Robustness of Next Generation Sequencing on Older Formalin-Fixed Paraffin-Embedded Tissue.
Danielle Mercatante Carrick, Michele G Mehaffey, Michael C Sachs, Sean Altekruse, Corinne Camalier, Rodrigo Chuaqui, Wendy Cozen, Biswajit Das, Brenda Y Hernandez, Chih-Jian Lih,[...]. PLoS One 2015
53
22

Standardization and quality management in next-generation sequencing.
Christoph Endrullat, Jörn Glökler, Philipp Franke, Marcus Frohme. Appl Transl Genom 2016
80
18

Formalin-fixed paraffin-embedded sample conditions for deep next generation sequencing.
Masayuki Nagahashi, Yoshifumi Shimada, Hiroshi Ichikawa, Satoru Nakagawa, Nobuaki Sato, Koji Kaneko, Keiichi Homma, Takashi Kawasaki, Keisuke Kodama, Stephen Lyle,[...]. J Surg Res 2017
18
22

Mutational landscape of metastatic cancer revealed from prospective clinical sequencing of 10,000 patients.
Ahmet Zehir, Ryma Benayed, Ronak H Shah, Aijazuddin Syed, Sumit Middha, Hyunjae R Kim, Preethi Srinivasan, Jianjiong Gao, Debyani Chakravarty, Sean M Devlin,[...]. Nat Med 2017
14


Guidelines for Validation of Next-Generation Sequencing-Based Oncology Panels: A Joint Consensus Recommendation of the Association for Molecular Pathology and College of American Pathologists.
Lawrence J Jennings, Maria E Arcila, Christopher Corless, Suzanne Kamel-Reid, Ira M Lubin, John Pfeifer, Robyn L Temple-Smolkin, Karl V Voelkerding, Marina N Nikiforova. J Mol Diagn 2017
210
14



Comparison of clinical targeted next-generation sequence data from formalin-fixed and fresh-frozen tissue specimens.
David H Spencer, Jennifer K Sehn, Haley J Abel, Mark A Watson, John D Pfeifer, Eric J Duncavage. J Mol Diagn 2013
108
11


Genomic landscape of colorectal cancer in Japan: clinical implications of comprehensive genomic sequencing for precision medicine.
Masayuki Nagahashi, Toshifumi Wakai, Yoshifumi Shimada, Hiroshi Ichikawa, Hitoshi Kameyama, Takashi Kobayashi, Jun Sakata, Ryoma Yagi, Nobuaki Sato, Yuko Kitagawa,[...]. Genome Med 2016
42
11

Support for the Human Cancer Genome Project.
Harold Varmus, Bruce Stillman. Science 2005
9
33


The Cancer Genome Atlas Pan-Cancer analysis project.
John N Weinstein, Eric A Collisson, Gordon B Mills, Kenna R Mills Shaw, Brad A Ozenberger, Kyle Ellrott, Ilya Shmulevich, Chris Sander, Joshua M Stuart. Nat Genet 2013
11

Development and validation of a clinical cancer genomic profiling test based on massively parallel DNA sequencing.
Garrett M Frampton, Alex Fichtenholtz, Geoff A Otto, Kai Wang, Sean R Downing, Jie He, Michael Schnall-Levin, Jared White, Eric M Sanford, Peter An,[...]. Nat Biotechnol 2013
11

Whole-exome sequencing and clinical interpretation of formalin-fixed, paraffin-embedded tumor samples to guide precision cancer medicine.
Eliezer M Van Allen, Nikhil Wagle, Petar Stojanov, Danielle L Perrin, Kristian Cibulskis, Sara Marlow, Judit Jane-Valbuena, Dennis C Friedrich, Gregory Kryukov, Scott L Carter,[...]. Nat Med 2014
330
11

Assessment of the quality of DNA from various formalin-fixed paraffin-embedded (FFPE) tissues and the use of this DNA for next-generation sequencing (NGS) with no artifactual mutation.
Naoki Einaga, Akio Yoshida, Hiroko Noda, Masaaki Suemitsu, Yuki Nakayama, Akihisa Sakurada, Yoshiko Kawaji, Hiromi Yamaguchi, Yasushi Sasaki, Takashi Tokino,[...]. PLoS One 2017
41
11

Analysis of Pre-Analytic Factors Affecting the Success of Clinical Next-Generation Sequencing of Solid Organ Malignancies.
Hui Chen, Rajyalakshmi Luthra, Rashmi S Goswami, Rajesh R Singh, Sinchita Roy-Chowdhuri. Cancers (Basel) 2015
52
11

Next-generation sequencing of RNA and DNA isolated from paired fresh-frozen and formalin-fixed paraffin-embedded samples of human cancer and normal tissue.
Jakob Hedegaard, Kasper Thorsen, Mette Katrine Lund, Anne-Mette K Hein, Stephen Jacques Hamilton-Dutoit, Søren Vang, Iver Nordentoft, Karin Birkenkamp-Demtröder, Mogens Kruhøffer, Henrik Hager,[...]. PLoS One 2014
183
11

Guidance for laboratories performing molecular pathology for cancer patients.
Ian A Cree, Zandra Deans, Marjolijn J L Ligtenberg, Nicola Normanno, Anders Edsjö, Etienne Rouleau, Francesc Solé, Erik Thunnissen, Wim Timens, Ed Schuuring,[...]. J Clin Pathol 2014
95
11

Effect of fixatives and tissue processing on the content and integrity of nucleic acids.
Mythily Srinivasan, Daniel Sedmak, Scott Jewell. Am J Pathol 2002
707
11

Methanol-based fixation is superior to buffered formalin for next-generation sequencing of DNA from clinical cancer samples.
A M Piskorz, D Ennis, G Macintyre, T E Goranova, M Eldridge, N Segui-Gracia, M Valganon, A Hoyle, C Orange, L Moore,[...]. Ann Oncol 2016
14
21


The effect of aging of formalin-fixed paraffin-embedded tissues on the in situ hybridization and immunohistochemistry signals in cervical lesions.
Allison J Nuovo, Michela Garofalo, Alexandria Mikhail, Alcina F Nicol, Cecilia Vianna-Andrade, Gerard J Nuovo. Diagn Mol Pathol 2013
13
15


Clinical next-generation sequencing in patients with non-small cell lung cancer.
Ian S Hagemann, Siddhartha Devarakonda, Christina M Lockwood, David H Spencer, Kalin Guebert, Andrew J Bredemeyer, Hussam Al-Kateb, TuDung T Nguyen, Eric J Duncavage, Catherine E Cottrell,[...]. Cancer 2015
130
7

Clinical Application of Targeted Next Generation Sequencing for Colorectal Cancers.
Quitterie Fontanges, Ricardo De Mendonca, Isabelle Salmon, Marie Le Mercier, Nicky D'Haene. Int J Mol Sci 2016
11
18

A new initiative on precision medicine.
Francis S Collins, Harold Varmus. N Engl J Med 2015
7


Aiming High--Changing the Trajectory for Cancer.
Douglas R Lowy, Francis S Collins. N Engl J Med 2016
43
7

Utility of comprehensive genomic sequencing for detecting HER2-positive colorectal cancer.
Yoshifumi Shimada, Ryoma Yagi, Hitoshi Kameyama, Masayuki Nagahashi, Hiroshi Ichikawa, Yosuke Tajima, Takuma Okamura, Mae Nakano, Masato Nakano, Yo Sato,[...]. Hum Pathol 2017
18
11

Exome enrichment and SOLiD sequencing of formalin fixed paraffin embedded (FFPE) prostate cancer tissue.
Roopika Menon, Mario Deng, Diana Boehm, Martin Braun, Falko Fend, Detlef Boehm, Saskia Biskup, Sven Perner. Int J Mol Sci 2012
21
9

A comparative study of ChIP-seq sequencing library preparation methods.
Arvind Y M Sundaram, Timothy Hughes, Shea Biondi, Nathalie Bolduc, Sarah K Bowman, Andrew Camilli, Yap C Chew, Catherine Couture, Andrew Farmer, John P Jerome,[...]. BMC Genomics 2016
16
12

DNA sequencing technologies: 2006-2016.
Elaine R Mardis. Nat Protoc 2017
96
7

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq.
Itay Tirosh, Benjamin Izar, Sanjay M Prakadan, Marc H Wadsworth, Daniel Treacy, John J Trombetta, Asaf Rotem, Christopher Rodman, Christine Lian, George Murphy,[...]. Science 2016
7

A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers.
Michael A Quail, Miriam Smith, Paul Coupland, Thomas D Otto, Simon R Harris, Thomas R Connor, Anna Bertoni, Harold P Swerdlow, Yong Gu. BMC Genomics 2012
971
7

Reference standards for next-generation sequencing.
Simon A Hardwick, Ira W Deveson, Tim R Mercer. Nat Rev Genet 2017
88
7

Personalized oncology through integrative high-throughput sequencing: a pilot study.
Sameek Roychowdhury, Matthew K Iyer, Dan R Robinson, Robert J Lonigro, Yi-Mi Wu, Xuhong Cao, Shanker Kalyana-Sundaram, Lee Sam, O Alejandro Balbin, Michael J Quist,[...]. Sci Transl Med 2011
410
7

Sequencing technologies - the next generation.
Michael L Metzker. Nat Rev Genet 2010
7

Library preparation methods for next-generation sequencing: tone down the bias.
Erwin L van Dijk, Yan Jaszczyszyn, Claude Thermes. Exp Cell Res 2014
191
7

The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
Aaron McKenna, Matthew Hanna, Eric Banks, Andrey Sivachenko, Kristian Cibulskis, Andrew Kernytsky, Kiran Garimella, David Altshuler, Stacey Gabriel, Mark Daly,[...]. Genome Res 2010
7

Sequence artefacts in a prospective series of formalin-fixed tumours tested for mutations in hotspot regions by massively parallel sequencing.
Stephen Q Wong, Jason Li, Angela Y-C Tan, Ravikiran Vedururu, Jia-Min B Pang, Hongdo Do, Jason Ellul, Ken Doig, Anthony Bell, Grant A MacArthur,[...]. BMC Med Genomics 2014
143
7

Nucleic acid extraction from formalin-fixed paraffin-embedded cancer cell line samples: a trade off between quantity and quality?
Caroline Seiler, Alan Sharpe, J Carl Barrett, Elizabeth A Harrington, Emma V Jones, Gayle B Marshall. BMC Clin Pathol 2016
13
15

Nucleic acids from long-term preserved FFPE tissues are suitable for downstream analyses.
Natalie Ludyga, Barbara Grünwald, Omid Azimzadeh, Sonja Englert, Heinz Höfler, Soile Tapio, Michaela Aubele. Virchows Arch 2012
100
7

Performance comparison of three DNA extraction kits on human whole-exome data from formalin-fixed paraffin-embedded normal and tumor samples.
Eric Bonnet, Marie-Laure Moutet, Céline Baulard, Delphine Bacq-Daian, Florian Sandron, Lilia Mesrob, Bertrand Fin, Marc Delépine, Marie-Ange Palomares, Claire Jubin,[...]. PLoS One 2018
16
12

Performance comparison of two commercial human whole-exome capture systems on formalin-fixed paraffin-embedded lung adenocarcinoma samples.
Silvia Bonfiglio, Irene Vanni, Valeria Rossella, Anna Truini, Dejan Lazarevic, Maria Giovanna Dal Bello, Angela Alama, Marco Mora, Erika Rijavec, Carlo Genova,[...]. BMC Cancer 2016
17
11

From human genome to cancer genome: the first decade.
David A Wheeler, Linghua Wang. Genome Res 2013
78
7

Circulating Tumor Cells (CTC) and Cell-Free DNA (cfDNA) Workshop 2016: Scientific Opportunities and Logistics for Cancer Clinical Trial Incorporation.
Lori E Lowes, Scott V Bratman, Ryan Dittamore, Susan Done, Shana O Kelley, Sabine Mai, Ryan D Morin, Alexander W Wyatt, Alison L Allan. Int J Mol Sci 2016
38
7

Performance evaluation for rapid detection of pan-cancer microsatellite instability with MANTIS.
Esko A Kautto, Russell Bonneville, Jharna Miya, Lianbo Yu, Melanie A Krook, Julie W Reeser, Sameek Roychowdhury. Oncotarget 2017
90
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.