A citation-based method for searching scientific literature

Lotta von Boehmer, Cassie Liu, Sarah Ackerman, Alexander D Gitlin, Qiao Wang, Anna Gazumyan, Michel C Nussenzweig. Nat Protoc 2016
Times Cited: 91







List of co-cited articles
807 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Efficient generation of monoclonal antibodies from single human B cells by single cell RT-PCR and expression vector cloning.
Thomas Tiller, Eric Meffre, Sergey Yurasov, Makoto Tsuiji, Michel C Nussenzweig, Hedda Wardemann. J Immunol Methods 2008
673
30

IgBLAST: an immunoglobulin variable domain sequence analysis tool.
Jian Ye, Ning Ma, Thomas L Madden, James M Ostell. Nucleic Acids Res 2013
578
28

Germinal centers.
Gabriel D Victora, Michel C Nussenzweig. Annu Rev Immunol 2012
21

Sequence and structural convergence of broad and potent HIV antibodies that mimic CD4 binding.
Johannes F Scheid, Hugo Mouquet, Beatrix Ueberheide, Ron Diskin, Florian Klein, Thiago Y K Oliveira, John Pietzsch, David Fenyo, Alexander Abadir, Klara Velinzon,[...]. Science 2011
852
18

Broad diversity of neutralizing antibodies isolated from memory B cells in HIV-infected individuals.
Johannes F Scheid, Hugo Mouquet, Niklas Feldhahn, Michael S Seaman, Klara Velinzon, John Pietzsch, Rene G Ott, Robert M Anthony, Henry Zebroski, Arlene Hurley,[...]. Nature 2009
679
16

Predominant autoantibody production by early human B cell precursors.
Hedda Wardemann, Sergey Yurasov, Anne Schaefer, James W Young, Eric Meffre, Michel C Nussenzweig. Science 2003
15

Germinal center dynamics revealed by multiphoton microscopy with a photoactivatable fluorescent reporter.
Gabriel D Victora, Tanja A Schwickert, David R Fooksman, Alice O Kamphorst, Michael Meyer-Hermann, Michael L Dustin, Michel C Nussenzweig. Cell 2010
765
14

PHENIX: a comprehensive Python-based system for macromolecular structure solution.
Paul D Adams, Pavel V Afonine, Gábor Bunkóczi, Vincent B Chen, Ian W Davis, Nathaniel Echols, Jeffrey J Headd, Li-Wei Hung, Gary J Kapral, Ralf W Grosse-Kunstleve,[...]. Acta Crystallogr D Biol Crystallogr 2010
13

Cloning and expression of murine Ig genes from single B cells.
Thomas Tiller, Christian E Busse, Hedda Wardemann. J Immunol Methods 2009
173
13

IMGT/V-QUEST: the highly customized and integrated system for IG and TR standardized V-J and V-D-J sequence analysis.
Xavier Brochet, Marie-Paule Lefranc, Véronique Giudicelli. Nucleic Acids Res 2008
804
13

Convergent antibody responses to SARS-CoV-2 in convalescent individuals.
Davide F Robbiani, Christian Gaebler, Frauke Muecksch, Julio C C Lorenzi, Zijun Wang, Alice Cho, Marianna Agudelo, Christopher O Barnes, Anna Gazumyan, Shlomo Finkin,[...]. Nature 2020
13

Immunization for HIV-1 Broadly Neutralizing Antibodies in Human Ig Knockin Mice.
Pia Dosenovic, Lotta von Boehmer, Amelia Escolano, Joseph Jardine, Natalia T Freund, Alexander D Gitlin, Andrew T McGuire, Daniel W Kulp, Thiago Oliveira, Louise Scharf,[...]. Cell 2015
185
12

Features and development of Coot.
P Emsley, B Lohkamp, W G Scott, K Cowtan. Acta Crystallogr D Biol Crystallogr 2010
12

Isolation of potent SARS-CoV-2 neutralizing antibodies and protection from disease in a small animal model.
Thomas F Rogers, Fangzhu Zhao, Deli Huang, Nathan Beutler, Alison Burns, Wan-Ting He, Oliver Limbo, Chloe Smith, Ge Song, Jordan Woehl,[...]. Science 2020
845
12

In-depth determination and analysis of the human paired heavy- and light-chain antibody repertoire.
Brandon J DeKosky, Takaaki Kojima, Alexa Rodin, Wissam Charab, Gregory C Ippolito, Andrew D Ellington, George Georgiou. Nat Med 2015
236
10

cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination.
Ali Punjani, John L Rubinstein, David J Fleet, Marcus A Brubaker. Nat Methods 2017
10

Recurrent Potent Human Neutralizing Antibodies to Zika Virus in Brazil and Mexico.
Davide F Robbiani, Leonia Bozzacco, Jennifer R Keeffe, Ricardo Khouri, Priscilla C Olsen, Anna Gazumyan, Dennis Schaefer-Babajew, Santiago Avila-Rios, Lilian Nogueira, Roshni Patel,[...]. Cell 2017
193
10

A highly conserved cryptic epitope in the receptor binding domains of SARS-CoV-2 and SARS-CoV.
Meng Yuan, Nicholas C Wu, Xueyong Zhu, Chang-Chun D Lee, Ray T Y So, Huibin Lv, Chris K P Mok, Ian A Wilson. Science 2020
885
10

Cross-neutralization of SARS-CoV-2 by a human monoclonal SARS-CoV antibody.
Dora Pinto, Young-Jun Park, Martina Beltramello, Alexandra C Walls, M Alejandra Tortorici, Siro Bianchi, Stefano Jaconi, Katja Culap, Fabrizia Zatta, Anna De Marco,[...]. Nature 2020
963
10

A next-generation cleaved, soluble HIV-1 Env trimer, BG505 SOSIP.664 gp140, expresses multiple epitopes for broadly neutralizing but not non-neutralizing antibodies.
Rogier W Sanders, Ronald Derking, Albert Cupo, Jean-Philippe Julien, Anila Yasmeen, Natalia de Val, Helen J Kim, Claudia Blattner, Alba Torrents de la Peña, Jacob Korzun,[...]. PLoS Pathog 2013
626
9

Structural basis for broad and potent neutralization of HIV-1 by antibody VRC01.
Tongqing Zhou, Ivelin Georgiev, Xueling Wu, Zhi-Yong Yang, Kaifan Dai, Andrés Finzi, Young Do Kwon, Johannes F Scheid, Wei Shi, Ling Xu,[...]. Science 2010
859
9

Rational design of envelope identifies broadly neutralizing human monoclonal antibodies to HIV-1.
Xueling Wu, Zhi-Yong Yang, Yuxing Li, Carl-Magnus Hogerkorp, William R Schief, Michael S Seaman, Tongqing Zhou, Stephen D Schmidt, Lan Wu, Ling Xu,[...]. Science 2010
9

Clonal selection in the germinal centre by regulated proliferation and hypermutation.
Alexander D Gitlin, Ziv Shulman, Michel C Nussenzweig. Nature 2014
355
9

Independent Roles of Switching and Hypermutation in the Development and Persistence of B Lymphocyte Memory.
Alexander D Gitlin, Lotta von Boehmer, Anna Gazumyan, Ziv Shulman, Thiago Y Oliveira, Michel C Nussenzweig. Immunity 2016
85
10

Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data.
Namita T Gupta, Jason A Vander Heiden, Mohamed Uduman, Daniel Gadala-Maria, Gur Yaari, Steven H Kleinstein. Bioinformatics 2015
304
9

Polyclonal and convergent antibody response to Ebola virus vaccine rVSV-ZEBOV.
Stefanie A Ehrhardt, Matthias Zehner, Verena Krähling, Hadas Cohen-Dvashi, Christoph Kreer, Nadav Elad, Henning Gruell, Meryem S Ercanoglu, Philipp Schommers, Lutz Gieselmann,[...]. Nat Med 2019
55
16

Commonality despite exceptional diversity in the baseline human antibody repertoire.
Bryan Briney, Anne Inderbitzin, Collin Joyce, Dennis R Burton. Nature 2019
191
9

Human neutralizing antibodies elicited by SARS-CoV-2 infection.
Bin Ju, Qi Zhang, Jiwan Ge, Ruoke Wang, Jing Sun, Xiangyang Ge, Jiazhen Yu, Sisi Shan, Bing Zhou, Shuo Song,[...]. Nature 2020
9

Potent Neutralizing Antibodies against SARS-CoV-2 Identified by High-Throughput Single-Cell Sequencing of Convalescent Patients' B Cells.
Yunlong Cao, Bin Su, Xianghua Guo, Wenjie Sun, Yongqiang Deng, Linlin Bao, Qinyu Zhu, Xu Zhang, Yinghui Zheng, Chenyang Geng,[...]. Cell 2020
722
9

Potent neutralizing antibodies from COVID-19 patients define multiple targets of vulnerability.
Philip J M Brouwer, Tom G Caniels, Karlijn van der Straten, Jonne L Snitselaar, Yoann Aldon, Sandhya Bangaru, Jonathan L Torres, Nisreen M A Okba, Mathieu Claireaux, Gius Kerster,[...]. Science 2020
688
9

Broad and potent neutralizing antibodies from an African donor reveal a new HIV-1 vaccine target.
Laura M Walker, Sanjay K Phogat, Po-Ying Chan-Hui, Denise Wagner, Pham Phung, Julie L Goss, Terri Wrin, Melissa D Simek, Steven Fling, Jennifer L Mitcham,[...]. Science 2009
8

Rational HIV immunogen design to target specific germline B cell receptors.
Joseph Jardine, Jean-Philippe Julien, Sergey Menis, Takayuki Ota, Oleksandr Kalyuzhniy, Andrew McGuire, Devin Sok, Po-Ssu Huang, Skye MacPherson, Meaghan Jones,[...]. Science 2013
490
8

Broad neutralization coverage of HIV by multiple highly potent antibodies.
Laura M Walker, Michael Huber, Katie J Doores, Emilia Falkowska, Robert Pejchal, Jean-Philippe Julien, Sheng-Kai Wang, Alejandra Ramos, Po-Ying Chan-Hui, Matthew Moyle,[...]. Nature 2011
8

Complex-type N-glycan recognition by potent broadly neutralizing HIV antibodies.
Hugo Mouquet, Louise Scharf, Zelda Euler, Yan Liu, Caroline Eden, Johannes F Scheid, Ariel Halper-Stromberg, Priyanthi N P Gnanapragasam, Daniel I R Spencer, Michael S Seaman,[...]. Proc Natl Acad Sci U S A 2012
393
8

Inference of macromolecular assemblies from crystalline state.
Evgeny Krissinel, Kim Henrick. J Mol Biol 2007
8

Structural basis for germ-line gene usage of a potent class of antibodies targeting the CD4-binding site of HIV-1 gp120.
Anthony P West, Ron Diskin, Michel C Nussenzweig, Pamela J Bjorkman. Proc Natl Acad Sci U S A 2012
166
8

Visualizing antibody affinity maturation in germinal centers.
Jeroen M J Tas, Luka Mesin, Giulia Pasqual, Sasha Targ, Johanne T Jacobsen, Yasuko M Mano, Casie S Chen, Jean-Claude Weill, Claude-Agnès Reynaud, Edward P Browne,[...]. Science 2016
235
8

Identification of a CD4-Binding-Site Antibody to HIV that Evolved Near-Pan Neutralization Breadth.
Jinghe Huang, Byong H Kang, Elise Ishida, Tongqing Zhou, Trevor Griesman, Zizhang Sheng, Fan Wu, Nicole A Doria-Rose, Baoshan Zhang, Krisha McKee,[...]. Immunity 2016
212
8

Sequential Immunization Elicits Broadly Neutralizing Anti-HIV-1 Antibodies in Ig Knockin Mice.
Amelia Escolano, Jon M Steichen, Pia Dosenovic, Daniel W Kulp, Jovana Golijanin, Devin Sok, Natalia T Freund, Alexander D Gitlin, Thiago Oliveira, Tatsuya Araki,[...]. Cell 2016
199
8

Role of BCR affinity in T cell dependent antibody responses in vivo.
Tien-An Yang Shih, Eric Meffre, Mario Roederer, Michel C Nussenzweig. Nat Immunol 2002
218
8

A dynamic T cell-limited checkpoint regulates affinity-dependent B cell entry into the germinal center.
Tanja A Schwickert, Gabriel D Victora, David R Fooksman, Alice O Kamphorst, Monica R Mugnier, Alexander D Gitlin, Michael L Dustin, Michel C Nussenzweig. J Exp Med 2011
264
8

Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation.
Daniel Wrapp, Nianshuang Wang, Kizzmekia S Corbett, Jory A Goldsmith, Ching-Lin Hsieh, Olubukola Abiona, Barney S Graham, Jason S McLellan. Science 2020
8

Analysis of a SARS-CoV-2-Infected Individual Reveals Development of Potent Neutralizing Antibodies with Limited Somatic Mutation.
Emilie Seydoux, Leah J Homad, Anna J MacCamy, K Rachael Parks, Nicholas K Hurlburt, Madeleine F Jennewein, Nicholas R Akins, Andrew B Stuart, Yu-Hsin Wan, Junli Feng,[...]. Immunity 2020
246
8

Potent neutralizing antibodies against multiple epitopes on SARS-CoV-2 spike.
Lihong Liu, Pengfei Wang, Manoj S Nair, Jian Yu, Micah Rapp, Qian Wang, Yang Luo, Jasper F-W Chan, Vincent Sahi, Amir Figueroa,[...]. Nature 2020
812
8

Broadly Neutralizing Antibodies to HIV and Their Role in Vaccine Design.
Dennis R Burton, Lars Hangartner. Annu Rev Immunol 2016
352
7

HIV-1 broadly neutralizing antibody precursor B cells revealed by germline-targeting immunogen.
Joseph G Jardine, Daniel W Kulp, Colin Havenar-Daughton, Anita Sarkar, Bryan Briney, Devin Sok, Fabian Sesterhenn, June Ereño-Orbea, Oleksandr Kalyuzhniy, Isaiah Deresa,[...]. Science 2016
253
7

UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
7

Rapid development of broadly influenza neutralizing antibodies through redundant mutations.
Leontios Pappas, Mathilde Foglierini, Luca Piccoli, Nicole L Kallewaard, Filippo Turrini, Chiara Silacci, Blanca Fernandez-Rodriguez, Gloria Agatic, Isabella Giacchetto-Sasselli, Gabriele Pellicciotta,[...]. Nature 2014
207
7

Coot: model-building tools for molecular graphics.
Paul Emsley, Kevin Cowtan. Acta Crystallogr D Biol Crystallogr 2004
7

A method for identification of HIV gp140 binding memory B cells in human blood.
Johannes F Scheid, Hugo Mouquet, Niklas Feldhahn, Bruce D Walker, Florencia Pereyra, Emily Cutrell, Michael S Seaman, John R Mascola, Richard T Wyatt, Hedda Wardemann,[...]. J Immunol Methods 2009
165
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.