A citation-based method for searching scientific literature

Yurong Xin, Jinrang Kim, Haruka Okamoto, Min Ni, Yi Wei, Christina Adler, Andrew J Murphy, George D Yancopoulos, Calvin Lin, Jesper Gromada. Cell Metab 2016
Times Cited: 221







List of co-cited articles
1018 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Single-Cell Transcriptome Profiling of Human Pancreatic Islets in Health and Type 2 Diabetes.
Åsa Segerstolpe, Athanasia Palasantza, Pernilla Eliasson, Eva-Marie Andersson, Anne-Christine Andréasson, Xiaoyan Sun, Simone Picelli, Alan Sabirsh, Maryam Clausen, Magnus K Bjursell,[...]. Cell Metab 2016
542
63

A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure.
Maayan Baron, Adrian Veres, Samuel L Wolock, Aubrey L Faust, Renaud Gaujoux, Amedeo Vetere, Jennifer Hyoje Ryu, Bridget K Wagner, Shai S Shen-Orr, Allon M Klein,[...]. Cell Syst 2016
400
45

A Single-Cell Transcriptome Atlas of the Human Pancreas.
Mauro J Muraro, Gitanjali Dharmadhikari, Dominic Grün, Nathalie Groen, Tim Dielen, Erik Jansen, Leon van Gurp, Marten A Engelse, Francoise Carlotti, Eelco J P de Koning,[...]. Cell Syst 2016
373
39

Single-cell transcriptomes identify human islet cell signatures and reveal cell-type-specific expression changes in type 2 diabetes.
Nathan Lawlor, Joshy George, Mohan Bolisetty, Romy Kursawe, Lili Sun, V Sivakamasundari, Ina Kycia, Paul Robson, Michael L Stitzel. Genome Res 2017
161
33

Single-Cell Transcriptomics of the Human Endocrine Pancreas.
Yue J Wang, Jonathan Schug, Kyoung-Jae Won, Chengyang Liu, Ali Naji, Dana Avrahami, Maria L Golson, Klaus H Kaestner. Diabetes 2016
170
27

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
21

Massively parallel digital transcriptional profiling of single cells.
Grace X Y Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu,[...]. Nat Commun 2017
19


Single-Cell Analysis of Human Pancreas Reveals Transcriptional Signatures of Aging and Somatic Mutation Patterns.
Martin Enge, H Efsun Arda, Marco Mignardi, John Beausang, Rita Bottino, Seung K Kim, Stephen R Quake. Cell 2017
181
17

Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
16

Pancreatic β cell dedifferentiation as a mechanism of diabetic β cell failure.
Chutima Talchai, Shouhong Xuan, Hua V Lin, Lori Sussel, Domenico Accili. Cell 2012
786
16

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
15

Pseudotime Ordering of Single Human β-Cells Reveals States of Insulin Production and Unfolded Protein Response.
Yurong Xin, Giselle Dominguez Gutierrez, Haruka Okamoto, Jinrang Kim, Ann-Hwee Lee, Christina Adler, Min Ni, George D Yancopoulos, Andrew J Murphy, Jesper Gromada. Diabetes 2018
63
22

Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types.
Jin Li, Johanna Klughammer, Matthias Farlik, Thomas Penz, Andreas Spittler, Charlotte Barbieux, Ekaterine Berishvili, Christoph Bock, Stefan Kubicek. EMBO Rep 2016
128
14

Generation of functional human pancreatic β cells in vitro.
Felicia W Pagliuca, Jeffrey R Millman, Mads Gürtler, Michael Segel, Alana Van Dervort, Jennifer Hyoje Ryu, Quinn P Peterson, Dale Greiner, Douglas A Melton. Cell 2014
14

Patch-Seq Links Single-Cell Transcriptomes to Human Islet Dysfunction in Diabetes.
Joan Camunas-Soler, Xiao-Qing Dai, Yan Hang, Austin Bautista, James Lyon, Kunimasa Suzuki, Seung K Kim, Stephen R Quake, Patrick E MacDonald. Cell Metab 2020
57
24

SCANPY: large-scale single-cell gene expression data analysis.
F Alexander Wolf, Philipp Angerer, Fabian J Theis. Genome Biol 2018
720
12

SC3: consensus clustering of single-cell RNA-seq data.
Vladimir Yu Kiselev, Kristina Kirschner, Michael T Schaub, Tallulah Andrews, Andrew Yiu, Tamir Chandra, Kedar N Natarajan, Wolf Reik, Mauricio Barahona, Anthony R Green,[...]. Nat Methods 2017
462
12

Evidence of β-Cell Dedifferentiation in Human Type 2 Diabetes.
Francesca Cinti, Ryotaro Bouchi, Ja Young Kim-Muller, Yoshiaki Ohmura, P R Sandoval, Matilde Masini, Lorella Marselli, Mara Suleiman, Lloyd E Ratner, Piero Marchetti,[...]. J Clin Endocrinol Metab 2016
252
12

Reversal of diabetes with insulin-producing cells derived in vitro from human pluripotent stem cells.
Alireza Rezania, Jennifer E Bruin, Payal Arora, Allison Rubin, Irina Batushansky, Ali Asadi, Shannon O'Dwyer, Nina Quiskamp, Majid Mojibian, Tobias Albrecht,[...]. Nat Biotechnol 2014
749
12

Recapitulating endocrine cell clustering in culture promotes maturation of human stem-cell-derived β cells.
Gopika G Nair, Jennifer S Liu, Holger A Russ, Stella Tran, Michael S Saxton, Richard Chen, Charity Juang, Mei-Lan Li, Vinh Q Nguyen, Simone Giacometti,[...]. Nat Cell Biol 2019
140
12

The unique cytoarchitecture of human pancreatic islets has implications for islet cell function.
Over Cabrera, Dora M Berman, Norma S Kenyon, Camillo Ricordi, Per-Olof Berggren, Alejandro Caicedo. Proc Natl Acad Sci U S A 2006
733
11

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
11

scmap: projection of single-cell RNA-seq data across data sets.
Vladimir Yu Kiselev, Andrew Yiu, Martin Hemberg. Nat Methods 2018
179
11

Acquisition of Dynamic Function in Human Stem Cell-Derived β Cells.
Leonardo Velazco-Cruz, Jiwon Song, Kristina G Maxwell, Madeleine M Goedegebuure, Punn Augsornworawat, Nathaniel J Hogrebe, Jeffrey R Millman. Stem Cell Reports 2019
106
11


Pseudotemporal Ordering of Single Cells Reveals Metabolic Control of Postnatal β Cell Proliferation.
Chun Zeng, Francesca Mulas, Yinghui Sui, Tiffany Guan, Nathanael Miller, Yuliang Tan, Fenfen Liu, Wen Jin, Andrea C Carrano, Mark O Huising,[...]. Cell Metab 2017
66
16

Age-Dependent Pancreatic Gene Regulation Reveals Mechanisms Governing Human β Cell Function.
H Efsun Arda, Lingyu Li, Jennifer Tsai, Eduardo A Torre, Yenny Rosli, Heshan Peiris, Robert C Spitale, Chunhua Dai, Xueying Gu, Kun Qu,[...]. Cell Metab 2016
123
11

Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors.
Laleh Haghverdi, Aaron T L Lun, Michael D Morgan, John C Marioni. Nat Biotechnol 2018
474
10

Spatial reconstruction of single-cell gene expression data.
Rahul Satija, Jeffrey A Farrell, David Gennert, Alexander F Schier, Aviv Regev. Nat Biotechnol 2015
10

Charting cellular identity during human in vitro β-cell differentiation.
Adrian Veres, Aubrey L Faust, Henry L Bushnell, Elise N Engquist, Jennifer Hyoje-Ryu Kenty, George Harb, Yeh-Chuin Poh, Elad Sintov, Mads Gürtler, Felicia W Pagliuca,[...]. Nature 2019
137
10


Deciphering Pancreatic Islet β Cell and α Cell Maturation Pathways and Characteristic Features at the Single-Cell Level.
Wei-Lin Qiu, Yu-Wei Zhang, Ye Feng, Lin-Chen Li, Liu Yang, Cheng-Ran Xu. Cell Metab 2017
56
17

Human islets contain four distinct subtypes of β cells.
Craig Dorrell, Jonathan Schug, Pamela S Canaday, Holger A Russ, Branden D Tarlow, Maria T Grompe, Tamara Horton, Matthias Hebrok, Philip R Streeter, Klaus H Kaestner,[...]. Nat Commun 2016
176
9

Global genomic and transcriptomic analysis of human pancreatic islets reveals novel genes influencing glucose metabolism.
João Fadista, Petter Vikman, Emilia Ottosson Laakso, Inês Guerra Mollet, Jonathan Lou Esguerra, Jalal Taneera, Petter Storm, Peter Osmark, Claes Ladenvall, Rashmi B Prasad,[...]. Proc Natl Acad Sci U S A 2014
244
9

The Human Cell Atlas.
Aviv Regev, Sarah A Teichmann, Eric S Lander, Ido Amit, Christophe Benoist, Ewan Birney, Bernd Bodenmiller, Peter Campbell, Piero Carninci, Menna Clatworthy,[...]. Elife 2017
668
9

Beta-cell deficit and increased beta-cell apoptosis in humans with type 2 diabetes.
Alexandra E Butler, Juliette Janson, Susan Bonner-Weir, Robert Ritzel, Robert A Rizza, Peter C Butler. Diabetes 2003
9

Epigenomic plasticity enables human pancreatic α to β cell reprogramming.
Nuria C Bramswig, Logan J Everett, Jonathan Schug, Craig Dorrell, Chengyang Liu, Yanping Luo, Philip R Streeter, Ali Naji, Markus Grompe, Klaus H Kaestner. J Clin Invest 2013
258
9

Systematic single-cell analysis provides new insights into heterogeneity and plasticity of the pancreas.
Sophie Tritschler, Fabian J Theis, Heiko Lickert, Anika Böttcher. Mol Metab 2017
42
21

Conversion of adult pancreatic alpha-cells to beta-cells after extreme beta-cell loss.
Fabrizio Thorel, Virginie Népote, Isabelle Avril, Kenji Kohno, Renaud Desgraz, Simona Chera, Pedro L Herrera. Nature 2010
750
9

Challenges in unsupervised clustering of single-cell RNA-seq data.
Vladimir Yu Kiselev, Tallulah S Andrews, Martin Hemberg. Nat Rev Genet 2019
215
9

Novel Observations From Next-Generation RNA Sequencing of Highly Purified Human Adult and Fetal Islet Cell Subsets.
David M Blodgett, Anetta Nowosielska, Shaked Afik, Susanne Pechhold, Anthony J Cura, Norman J Kennedy, Soyoung Kim, Alper Kucukural, Roger J Davis, Sally C Kent,[...]. Diabetes 2015
168
8

Pancreatic β cell dedifferentiation in diabetes and redifferentiation following insulin therapy.
Zhiyu Wang, Nathaniel W York, Colin G Nichols, Maria S Remedi. Cell Metab 2014
222
8

Controlled induction of human pancreatic progenitors produces functional beta-like cells in vitro.
Holger A Russ, Audrey V Parent, Jennifer J Ringler, Thomas G Hennings, Gopika G Nair, Mayya Shveygert, Tingxia Guo, Sapna Puri, Leena Haataja, Vincenzo Cirulli,[...]. EMBO J 2015
291
8

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.
Allon M Klein, Linas Mazutis, Ilke Akartuna, Naren Tallapragada, Adrian Veres, Victor Li, Leonid Peshkin, David A Weitz, Marc W Kirschner. Cell 2015
8

The inactivation of Arx in pancreatic α-cells triggers their neogenesis and conversion into functional β-like cells.
Monica Courtney, Elisabet Gjernes, Noémie Druelle, Christophe Ravaud, Andhira Vieira, Nouha Ben-Othman, Anja Pfeifer, Fabio Avolio, Gunter Leuckx, Sandra Lacas-Gervais,[...]. PLoS Genet 2013
152
8

Insulin mutations impair beta-cell development in a patient-derived iPSC model of neonatal diabetes.
Diego Balboa, Jonna Saarimäki-Vire, Daniel Borshagovski, Mantas Survila, Päivi Lindholm, Emilia Galli, Solja Eurola, Jarkko Ustinov, Heli Grym, Hanna Huopio,[...]. Elife 2018
55
14

Generation of stem cell-derived β-cells from patients with type 1 diabetes.
Jeffrey R Millman, Chunhui Xie, Alana Van Dervort, Mads Gürtler, Felicia W Pagliuca, Douglas A Melton. Nat Commun 2016
179
8

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
7

Bulk tissue cell type deconvolution with multi-subject single-cell expression reference.
Xuran Wang, Jihwan Park, Katalin Susztak, Nancy R Zhang, Mingyao Li. Nat Commun 2019
142
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.