A citation-based method for searching scientific literature

Advaitha Madireddy, Settapong T Kosiyatrakul, Rebecca A Boisvert, Emilia Herrera-Moyano, María L García-Rubio, Jeannine Gerhardt, Elizabeth A Vuono, Nichole Owen, Zi Yan, Susan Olson, Andrés Aguilera, Niall G Howlett, Carl L Schildkraut. Mol Cell 2016
Times Cited: 99







List of co-cited articles
1517 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



The Fanconi Anemia Pathway Protects Genome Integrity from R-loops.
María L García-Rubio, Carmen Pérez-Calero, Sonia I Barroso, Emanuela Tumini, Emilia Herrera-Moyano, Iván V Rosado, Andrés Aguilera. PLoS Genet 2015
160
41

The Fanconi Anemia Pathway Maintains Genome Stability by Coordinating Replication and Transcription.
Rebekka A Schwab, Jadwiga Nieminuszczy, Fenil Shah, Jamie Langton, David Lopez Martinez, Chih-Chao Liang, Martin A Cohn, Richard J Gibbons, Andrew J Deans, Wojciech Niedzwiedz. Mol Cell 2015
195
40

Replication stress activates DNA repair synthesis in mitosis.
Sheroy Minocherhomji, Songmin Ying, Victoria A Bjerregaard, Sara Bursomanno, Aiste Aleliunaite, Wei Wu, Hocine W Mankouri, Huahao Shen, Ying Liu, Ian D Hickson. Nature 2015
293
39

Cell-type-specific replication initiation programs set fragility of the FRA3B fragile site.
Anne Letessier, Gaël A Millot, Stéphane Koundrioukoff, Anne-Marie Lachagès, Nicolas Vogt, R Scott Hansen, Bernard Malfoy, Olivier Brison, Michelle Debatisse. Nature 2011
290
37

Replication stress induces sister-chromatid bridging at fragile site loci in mitosis.
Kok Lung Chan, Timea Palmai-Pallag, Songmin Ying, Ian D Hickson. Nat Cell Biol 2009
415
36

Large transcription units unify copy number variants and common fragile sites arising under replication stress.
Thomas E Wilson, Martin F Arlt, So Hae Park, Sountharia Rajendran, Michelle Paulsen, Mats Ljungman, Thomas W Glover. Genome Res 2015
102
31

Chromosome fragile sites.
Sandra G Durkin, Thomas W Glover. Annu Rev Genet 2007
504
31

Common fragile site profiling in epithelial and erythroid cells reveals that most recurrent cancer deletions lie in fragile sites hosting large genes.
Benoît Le Tallec, Gaël Armel Millot, Marion Esther Blin, Olivier Brison, Bernard Dutrillaux, Michelle Debatisse. Cell Rep 2013
123
29

The Fanconi anemia pathway is required for the DNA replication stress response and for the regulation of common fragile site stability.
Niall G Howlett, Toshiyasu Taniguchi, Sandra G Durkin, Alan D D'Andrea, Thomas W Glover. Hum Mol Genet 2005
210
29

MUS81 promotes common fragile site expression.
Songmin Ying, Sheroy Minocherhomji, Kok Lung Chan, Timea Palmai-Pallag, Wai Kit Chu, Theresa Wass, Hocine W Mankouri, Ying Liu, Ian D Hickson. Nat Cell Biol 2013
184
27

Identification of early replicating fragile sites that contribute to genome instability.
Jacqueline H Barlow, Robert B Faryabi, Elsa Callén, Nancy Wong, Amy Malhowski, Hua Tang Chen, Gustavo Gutierrez-Cruz, Hong-Wei Sun, Peter McKinnon, George Wright,[...]. Cell 2013
257
27

BRCA2 prevents R-loop accumulation and associates with TREX-2 mRNA export factor PCID2.
Vaibhav Bhatia, Sonia I Barroso, María L García-Rubio, Emanuela Tumini, Emilia Herrera-Moyano, Andrés Aguilera. Nature 2014
286
26


R loops: new modulators of genome dynamics and function.
José M Santos-Pereira, Andrés Aguilera. Nat Rev Genet 2015
376
25

Replication stress induces accumulation of FANCD2 at central region of large fragile genes.
Yusuke Okamoto, Watal M Iwasaki, Kazuto Kugou, Kazuki K Takahashi, Arisa Oda, Koichi Sato, Wataru Kobayashi, Hidehiko Kawai, Ryo Sakasai, Akifumi Takaori-Kondo,[...]. Nucleic Acids Res 2018
39
64



FANCD2 binds MCM proteins and controls replisome function upon activation of s phase checkpoint signaling.
Gérald Lossaint, Marion Larroque, Cyril Ribeyre, Nicole Bec, Christian Larroque, Chantal Décaillet, Kerstin Gari, Angelos Constantinou. Mol Cell 2013
151
23

RAD52 Facilitates Mitotic DNA Synthesis Following Replication Stress.
Rahul Bhowmick, Sheroy Minocherhomji, Ian D Hickson. Mol Cell 2016
184
23

Transcription-Replication Conflict Orientation Modulates R-Loop Levels and Activates Distinct DNA Damage Responses.
Stephan Hamperl, Michael J Bocek, Joshua C Saldivar, Tomek Swigut, Karlene A Cimprich. Cell 2017
225
22

Fragile sites in cancer: more than meets the eye.
Thomas W Glover, Thomas E Wilson, Martin F Arlt. Nat Rev Cancer 2017
117
22


Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability.
Julie Sollier, Caroline Townsend Stork, María L García-Rubio, Renee D Paulsen, Andrés Aguilera, Karlene A Cimprich. Mol Cell 2014
279
20

R loops: from transcription byproducts to threats to genome stability.
Andrés Aguilera, Tatiana García-Muse. Mol Cell 2012
574
20

BRCA1 recruitment to transcriptional pause sites is required for R-loop-driven DNA damage repair.
Elodie Hatchi, Konstantina Skourti-Stathaki, Steffen Ventz, Luca Pinello, Angela Yen, Kinga Kamieniarz-Gdula, Stoil Dimitrov, Shailja Pathania, Kristine M McKinney, Matthew L Eaton,[...]. Mol Cell 2015
222
20

Failure of origin activation in response to fork stalling leads to chromosomal instability at fragile sites.
Efrat Ozeri-Galai, Ronald Lebofsky, Ayelet Rahat, Assaf C Bester, Aaron Bensimon, Batsheva Kerem. Mol Cell 2011
126
20


ATR regulates fragile site stability.
Anne M Casper, Paul Nghiem, Martin F Arlt, Thomas W Glover. Cell 2002
440
20


Molecular basis for expression of common and rare fragile sites.
Eitan Zlotorynski, Ayelet Rahat, Jennifer Skaug, Neta Ben-Porat, Efrat Ozeri, Ruth Hershberg, Ayala Levi, Stephen W Scherer, Hanah Margalit, Batsheva Kerem. Mol Cell Biol 2003
176
20

Topoisomerase I suppresses genomic instability by preventing interference between replication and transcription.
Sandie Tuduri, Laure Crabbé, Chiara Conti, Hélène Tourrière, Heidi Holtgreve-Grez, Anna Jauch, Véronique Pantesco, John De Vos, Aubin Thomas, Charles Theillet,[...]. Nat Cell Biol 2009
326
19

Causes and consequences of replication stress.
Michelle K Zeman, Karlene A Cimprich. Nat Cell Biol 2014
967
19

The Fanconi anaemia pathway: new players and new functions.
Raphael Ceccaldi, Prabha Sarangi, Alan D D'Andrea. Nat Rev Mol Cell Biol 2016
341
19

Activation of the DNA damage checkpoint and genomic instability in human precancerous lesions.
Vassilis G Gorgoulis, Leandros-Vassilios F Vassiliou, Panagiotis Karakaidos, Panayotis Zacharatos, Athanassios Kotsinas, Triantafillos Liloglou, Monica Venere, Richard A Ditullio, Nikolaos G Kastrinakis, Brynn Levy,[...]. Nature 2005
19

DNA damage response as a candidate anti-cancer barrier in early human tumorigenesis.
Jirina Bartkova, Zuzana Horejsí, Karen Koed, Alwin Krämer, Frederic Tort, Karsten Zieger, Per Guldberg, Maxwell Sehested, Jahn M Nesland, Claudia Lukas,[...]. Nature 2005
19

DNA synthesis by Pol η promotes fragile site stability by preventing under-replicated DNA in mitosis.
Valérie Bergoglio, Anne-Sophie Boyer, Erin Walsh, Valeria Naim, Gaëlle Legube, Marietta Y W T Lee, Laurie Rey, Filippo Rosselli, Christophe Cazaux, Kristin A Eckert,[...]. J Cell Biol 2013
125
19

Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals.
Lionel A Sanz, Stella R Hartono, Yoong Wearn Lim, Sandra Steyaert, Aparna Rajpurkar, Paul A Ginno, Xiaoqin Xu, Frédéric Chédin. Mol Cell 2016
230
18

53BP1 nuclear bodies form around DNA lesions generated by mitotic transmission of chromosomes under replication stress.
Claudia Lukas, Velibor Savic, Simon Bekker-Jensen, Carsten Doil, Beate Neumann, Ronni Sølvhøj Pedersen, Merete Grøfte, Kok Lung Chan, Ian David Hickson, Jiri Bartek,[...]. Nat Cell Biol 2011
450
18

Molecular profiling of common fragile sites in human fibroblasts.
Benoî Le Tallec, Bernard Dutrillaux, Anne-Marie Lachages, Gael Armel Millot, Olivier Brison, Michelle Debatisse. Nat Struct Mol Biol 2011
90
20


Oncogenes create a unique landscape of fragile sites.
Karin Miron, Tamar Golan-Lev, Raz Dvir, Eyal Ben-David, Batsheva Kerem. Nat Commun 2015
49
34

R-loop-mediated genomic instability is caused by impairment of replication fork progression.
Wenjian Gan, Zhishuang Guan, Jie Liu, Ting Gui, Keng Shen, James L Manley, Xialu Li. Genes Dev 2011
249
17

Increased global transcription activity as a mechanism of replication stress in cancer.
Panagiotis Kotsantis, Lara Marques Silva, Sarah Irmscher, Rebecca M Jones, Lisa Folkes, Natalia Gromak, Eva Petermann. Nat Commun 2016
133
16



An oncogene-induced DNA damage model for cancer development.
Thanos D Halazonetis, Vassilis G Gorgoulis, Jiri Bartek. Science 2008
16

Common fragile sites: mechanisms of instability revisited.
Michelle Debatisse, Benoît Le Tallec, Anne Letessier, Bernard Dutrillaux, Olivier Brison. Trends Genet 2012
178
16

Signatures of mutation and selection in the cancer genome.
Graham R Bignell, Chris D Greenman, Helen Davies, Adam P Butler, Sarah Edkins, Jenny M Andrews, Gemma Buck, Lina Chen, David Beare, Calli Latimer,[...]. Nature 2010
487
16

Transcription-replication conflicts: how they occur and how they are resolved.
Tatiana García-Muse, Andrés Aguilera. Nat Rev Mol Cell Biol 2016
170
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.