A citation-based method for searching scientific literature

Zhicong Huang, Erman Ayday, Huang Lin, Raeka S Aiyar, Adam Molyneaux, Zhenyu Xu, Jacques Fellay, Lars M Steinmetz, Jean-Pierre Hubaux. Genome Res 2016
Times Cited: 14







List of co-cited articles
108 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Routes for breaching and protecting genetic privacy.
Yaniv Erlich, Arvind Narayanan. Nat Rev Genet 2014
158
42

Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks.
Jean Louis Raisaro, Florian Tramèr, Zhanglong Ji, Diyue Bu, Yongan Zhao, Knox Carey, David Lloyd, Heidi Sofia, Dixie Baker, Paul Flicek,[...]. J Am Med Inform Assoc 2017
39
35

Privacy in the Genomic Era.
Muhammad Naveed, Erman Ayday, Ellen W Clayton, Jacques Fellay, Carl A Gunter, Jean-Pierre Hubaux, Bradley A Malin, Xiaofeng Wang. ACM Comput Surv 2015
78
35

Identifying personal genomes by surname inference.
Melissa Gymrek, Amy L McGuire, David Golan, Eran Halperin, Yaniv Erlich. Science 2013
499
35

PRINCESS: Privacy-protecting Rare disease International Network Collaboration via Encryption through Software guard extensionS.
Feng Chen, Shuang Wang, Xiaoqian Jiang, Sijie Ding, Yao Lu, Jihoon Kim, S Cenk Sahinalp, Chisato Shimizu, Jane C Burns, Victoria J Wright,[...]. Bioinformatics 2017
43
35

Big Data: Astronomical or Genomical?
Zachary D Stephens, Skylar Y Lee, Faraz Faghri, Roy H Campbell, Chengxiang Zhai, Miles J Efron, Ravishankar Iyer, Michael C Schatz, Saurabh Sinha, Gene E Robinson. PLoS Biol 2015
424
28

Resolving individuals contributing trace amounts of DNA to highly complex mixtures using high-density SNP genotyping microarrays.
Nils Homer, Szabolcs Szelinger, Margot Redman, David Duggan, Waibhav Tembe, Jill Muehling, John V Pearson, Dietrich A Stephan, Stanley F Nelson, David W Craig. PLoS Genet 2008
471
28

Efficient and secure outsourcing of genomic data storage.
João Sá Sousa, Cédric Lefebvre, Zhicong Huang, Jean Louis Raisaro, Carlos Aguilar-Melchor, Marc-Olivier Killijian, Jean-Pierre Hubaux. BMC Med Genomics 2017
10
40


Realizing the potential of blockchain technologies in genomics.
Halil Ibrahim Ozercan, Atalay Mert Ileri, Erman Ayday, Can Alkan. Genome Res 2018
32
28

Deriving genomic diagnoses without revealing patient genomes.
Karthik A Jagadeesh, David J Wu, Johannes A Birgmeier, Dan Boneh, Gill Bejerano. Science 2017
41
28

Ensuring privacy and security of genomic data and functionalities.
Abukari Mohammed Yakubu, Yi-Ping Phoebe Chen. Brief Bioinform 2020
12
33

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
21

HEALER: homomorphic computation of ExAct Logistic rEgRession for secure rare disease variants analysis in GWAS.
Shuang Wang, Yuchen Zhang, Wenrui Dai, Kristin Lauter, Miran Kim, Yuzhe Tang, Hongkai Xiong, Xiaoqian Jiang. Bioinformatics 2016
41
21

Privacy-Preserving Data Sharing for Genome-Wide Association Studies.
Caroline Uhlerop, Aleksandra Slavković, Stephen E Fienberg. J Priv Confid 2013
25
21

Private and Efficient Query Processing on Outsourced Genomic Databases.
Reza Ghasemi, Md Momin Al Aziz, Noman Mohammed, Massoud Hadian Dehkordi, Xiaoqian Jiang. IEEE J Biomed Health Inform 2017
7
42

A cryptographic approach to securely share and query genomic sequences.
Murat Kantarcioglu, Wei Jiang, Ying Liu, Bradley Malin. IEEE Trans Inf Technol Biomed 2008
30
21

Secure approximation of edit distance on genomic data.
Md Momin Al Aziz, Dima Alhadidi, Noman Mohammed. BMC Med Genomics 2017
9
33

Privacy preserving processing of genomic data: A survey.
Mete Akgün, A Osman Bayrak, Bugra Ozer, M Şamil Sağıroğlu. J Biomed Inform 2015
17
21

Privacy Risks from Genomic Data-Sharing Beacons.
Suyash S Shringarpure, Carlos D Bustamante. Am J Hum Genet 2015
87
21

Secure management of biomedical data with cryptographic hardware.
Mustafa Canim, Murat Kantarcioglu, Bradley Malin. IEEE Trans Inf Technol Biomed 2012
16
21

Identity inference of genomic data using long-range familial searches.
Yaniv Erlich, Tal Shor, Itsik Pe'er, Shai Carmi. Science 2018
107
21

Secure count query on encrypted genomic data.
Mohammad Zahidul Hasan, Md Safiur Rahman Mahdi, Md Nazmus Sadat, Noman Mohammed. J Biomed Inform 2018
11
27

Accurate filtering of privacy-sensitive information in raw genomic data.
Jérémie Decouchant, Maria Fernandes, Marcus Völp, Francisco M Couto, Paulo Esteves-Veríssimo. J Biomed Inform 2018
6
50

Identifying genetic relatives without compromising privacy.
Dan He, Nicholas A Furlotte, Farhad Hormozdiari, Jong Wha J Joo, Akshay Wadia, Rafail Ostrovsky, Amit Sahai, Eleazar Eskin. Genome Res 2014
20
21

Re-identification of individuals in genomic data-sharing beacons via allele inference.
Nora von Thenen, Erman Ayday, A Ercument Cicek. Bioinformatics 2019
21
21


Protecting Privacy and Security of Genomic Data in i2b2 with Homomorphic Encryption and Differential Privacy.
Jean Louis Raisaro, Gwangbae Choi, Sylvain Pradervand, Raphael Colsenet, Nathalie Jacquemont, Nicolas Rosat, Vincent Mooser, Jean-Pierre Hubaux. IEEE/ACM Trans Comput Biol Bioinform 2018
14
21

Data Sanitization to Reduce Private Information Leakage from Functional Genomics.
Gamze Gürsoy, Prashant Emani, Charlotte M Brannon, Otto A Jolanki, Arif Harmanci, J Seth Strattan, J Michael Cherry, Andrew D Miranker, Mark Gerstein. Cell 2020
13
23

Sketching algorithms for genomic data analysis and querying in a secure enclave.
Can Kockan, Kaiyuan Zhu, Natnatee Dokmai, Nikolai Karpov, M Oguzhan Kulekci, David P Woodruff, S Cenk Sahinalp. Nat Methods 2020
11
27

Privacy challenges and research opportunities for genomic data sharing.
Luca Bonomi, Yingxiang Huang, Lucila Ohno-Machado. Nat Genet 2020
31
21



NRGC: a novel referential genome compression algorithm.
Subrata Saha, Sanguthevar Rajasekaran. Bioinformatics 2016
11
18

GDC 2: Compression of large collections of genomes.
Sebastian Deorowicz, Agnieszka Danek, Marcin Niemiec. Sci Rep 2015
19
14

The diploid genome sequence of an individual human.
Samuel Levy, Granger Sutton, Pauline C Ng, Lars Feuk, Aaron L Halpern, Brian P Walenz, Nelson Axelrod, Jiaqi Huang, Ewen F Kirkness, Gennady Denisov,[...]. PLoS Biol 2007
14

Initial sequencing and analysis of the human genome.
E S Lander, L M Linton, B Birren, C Nusbaum, M C Zody, J Baldwin, K Devon, K Dewar, M Doyle, W FitzHugh,[...]. Nature 2001
14

Adaptive efficient compression of genomes.
Sebastian Wandelt, Ulf Leser. Algorithms Mol Biol 2012
14
14

Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage.
Guillaume Holley, Roland Wittler, Jens Stoye. Algorithms Mol Biol 2016
28
14

GReEn: a tool for efficient compression of genome resequencing data.
Armando J Pinho, Diogo Pratas, Sara P Garcia. Nucleic Acids Res 2012
46
14

Comment on: 'ERGC: an efficient referential genome compression algorithm'.
Sebastian Deorowicz, Szymon Grabowski, Idoia Ochoa, Mikel Hernaez, Tsachy Weissman. Bioinformatics 2016
2
100

CoGI: Towards Compressing Genomes as an Image.
Xiaojing Xie, Shuigeng Zhou, Jihong Guan. IEEE/ACM Trans Comput Biol Bioinform 2015
9
22

A novel compression tool for efficient storage of genome resequencing data.
Congmao Wang, Dabing Zhang. Nucleic Acids Res 2011
36
14

High-throughput DNA sequence data compression.
Zexuan Zhu, Yongpeng Zhang, Zhen Ji, Shan He, Xiao Yang. Brief Bioinform 2015
40
14

Robust relative compression of genomes with random access.
Sebastian Deorowicz, Szymon Grabowski. Bioinformatics 2011
43
14

The first Korean genome sequence and analysis: full genome sequencing for a socio-ethnic group.
Sung-Min Ahn, Tae-Hyung Kim, Sunghoon Lee, Deokhoon Kim, Ho Ghang, Dae-Soo Kim, Byoung-Chul Kim, Sang-Yoon Kim, Woo-Yeon Kim, Chulhong Kim,[...]. Genome Res 2009
215
14

Genome compression: a novel approach for large collections.
Sebastian Deorowicz, Agnieszka Danek, Szymon Grabowski. Bioinformatics 2013
26
14

The human genome contracts again.
Dmitri S Pavlichin, Tsachy Weissman, Golan Yona. Bioinformatics 2013
17
14

Human genomes as email attachments.
Scott Christley, Yiming Lu, Chen Li, Xiaohui Xie. Bioinformatics 2009
65
14

Comparison of high-throughput sequencing data compression tools.
Ibrahim Numanagić, James K Bonfield, Faraz Hach, Jan Voges, Jörn Ostermann, Claudio Alberti, Marco Mattavelli, S Cenk Sahinalp. Nat Methods 2016
44
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.