A citation-based method for searching scientific literature

Michael J Workman, Maxime M Mahe, Stephen Trisno, Holly M Poling, Carey L Watson, Nambirajan Sundaram, Ching-Fang Chang, Jacqueline Schiesser, Philippe Aubert, Edouard G Stanley, Andrew G Elefanty, Yuichiro Miyaoka, Mohammad A Mandegar, Bruce R Conklin, Michel Neunlist, Samantha A Brugmann, Michael A Helmrath, James M Wells. Nat Med 2017
Times Cited: 310







List of co-cited articles
1597 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Directed differentiation of human pluripotent stem cells into intestinal tissue in vitro.
Jason R Spence, Christopher N Mayhew, Scott A Rankin, Matthew F Kuhar, Jefferson E Vallance, Kathryn Tolle, Elizabeth E Hoskins, Vladimir V Kalinichenko, Susanne I Wells, Aaron M Zorn,[...]. Nature 2011
46

Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche.
Toshiro Sato, Robert G Vries, Hugo J Snippert, Marc van de Wetering, Nick Barker, Daniel E Stange, Johan H van Es, Arie Abo, Pekka Kujala, Peter J Peters,[...]. Nature 2009
43

Long-term expansion of epithelial organoids from human colon, adenoma, adenocarcinoma, and Barrett's epithelium.
Toshiro Sato, Daniel E Stange, Marc Ferrante, Robert G J Vries, Johan H Van Es, Stieneke Van den Brink, Winan J Van Houdt, Apollo Pronk, Joost Van Gorp, Peter D Siersema,[...]. Gastroenterology 2011
30

An in vivo model of human small intestine using pluripotent stem cells.
Carey L Watson, Maxime M Mahe, Jorge Múnera, Jonathan C Howell, Nambirajan Sundaram, Holly M Poling, Jamie I Schweitzer, Jefferson E Vallance, Christopher N Mayhew, Ying Sun,[...]. Nat Med 2014
344
27

Neural Crest Cell Implantation Restores Enteric Nervous System Function and Alters the Gastrointestinal Transcriptome in Human Tissue-Engineered Small Intestine.
Christopher R Schlieve, Kathryn L Fowler, Matthew Thornton, Sha Huang, Ibrahim Hajjali, Xiaogang Hou, Brendan Grubbs, Jason R Spence, Tracy C Grikscheit. Stem Cell Reports 2017
71
35

Modelling human development and disease in pluripotent stem-cell-derived gastric organoids.
Kyle W McCracken, Emily M Catá, Calyn M Crawford, Katie L Sinagoga, Michael Schumacher, Briana E Rockich, Yu-Hwai Tsai, Christopher N Mayhew, Jason R Spence, Yana Zavros,[...]. Nature 2014
566
24


Cerebral organoids model human brain development and microcephaly.
Madeline A Lancaster, Magdalena Renner, Carol-Anne Martin, Daniel Wenzel, Louise S Bicknell, Matthew E Hurles, Tessa Homfray, Josef M Penninger, Andrew P Jackson, Juergen A Knoblich. Nature 2013
22

Designer matrices for intestinal stem cell and organoid culture.
Nikolce Gjorevski, Norman Sachs, Andrea Manfrin, Sonja Giger, Maiia E Bragina, Paloma Ordóñez-Morán, Hans Clevers, Matthias P Lutolf. Nature 2016
660
20


Deriving human ENS lineages for cell therapy and drug discovery in Hirschsprung disease.
Faranak Fattahi, Julius A Steinbeck, Sonja Kriks, Jason Tchieu, Bastian Zimmer, Sarah Kishinevsky, Nadja Zeltner, Yvonne Mica, Wael El-Nachef, Huiyong Zhao,[...]. Nature 2016
175
19

Homeostatic mini-intestines through scaffold-guided organoid morphogenesis.
Mikhail Nikolaev, Olga Mitrofanova, Nicolas Broguiere, Sara Geraldo, Devanjali Dutta, Yoji Tabata, Bilge Elci, Nathalie Brandenberg, Irina Kolotuev, Nikolce Gjorevski,[...]. Nature 2020
185
19

Vascularized and functional human liver from an iPSC-derived organ bud transplant.
Takanori Takebe, Keisuke Sekine, Masahiro Enomura, Hiroyuki Koike, Masaki Kimura, Takunori Ogaeri, Ran-Ran Zhang, Yasuharu Ueno, Yun-Wen Zheng, Naoto Koike,[...]. Nature 2013
18

Synthetic hydrogels for human intestinal organoid generation and colonic wound repair.
Ricardo Cruz-Acuña, Miguel Quirós, Attila E Farkas, Priya H Dedhia, Sha Huang, Dorothée Siuda, Vicky García-Hernández, Alyssa J Miller, Jason R Spence, Asma Nusrat,[...]. Nat Cell Biol 2017
254
17

In vitro expansion of human gastric epithelial stem cells and their responses to bacterial infection.
Sina Bartfeld, Tülay Bayram, Marc van de Wetering, Meritxell Huch, Harry Begthel, Pekka Kujala, Robert Vries, Peter J Peters, Hans Clevers. Gastroenterology 2015
418
17

Progress and potential in organoid research.
Giuliana Rossi, Andrea Manfrin, Matthias P Lutolf. Nat Rev Genet 2018
364
15

Differentiation of Human Pluripotent Stem Cells into Colonic Organoids via Transient Activation of BMP Signaling.
Jorge O Múnera, Nambirajan Sundaram, Scott A Rankin, David Hill, Carey Watson, Maxime Mahe, Jefferson E Vallance, Noah F Shroyer, Katie L Sinagoga, Adrian Zarzoso-Lacoste,[...]. Cell Stem Cell 2017
139
15

Modelling human hepato-biliary-pancreatic organogenesis from the foregut-midgut boundary.
Hiroyuki Koike, Kentaro Iwasawa, Rie Ouchi, Mari Maezawa, Kirsten Giesbrecht, Norikazu Saiki, Autumn Ferguson, Masaki Kimura, Wendy L Thompson, James M Wells,[...]. Nature 2019
120
15

Prospective derivation of a living organoid biobank of colorectal cancer patients.
Marc van de Wetering, Hayley E Francies, Joshua M Francis, Gergana Bounova, Francesco Iorio, Apollo Pronk, Winan van Houdt, Joost van Gorp, Amaro Taylor-Weiner, Lennart Kester,[...]. Cell 2015
15

Organoids-on-a-chip.
Sunghee Estelle Park, Andrei Georgescu, Dongeun Huh. Science 2019
259
14

In vitro generation of human pluripotent stem cell derived lung organoids.
Briana R Dye, David R Hill, Michael A H Ferguson, Yu-Hwai Tsai, Melinda S Nagy, Rachel Dyal, James M Wells, Christopher N Mayhew, Roy Nattiv, Ophir D Klein,[...]. Elife 2015
432
14

Mechanically induced development and maturation of human intestinal organoids in vivo.
Holly M Poling, David Wu, Nicole Brown, Michael Baker, Taylor A Hausfeld, Nhan Huynh, Samuel Chaffron, James C Y Dunn, Simon P Hogan, James M Wells,[...]. Nat Biomed Eng 2018
54
25

Identification of stem cells in small intestine and colon by marker gene Lgr5.
Nick Barker, Johan H van Es, Jeroen Kuipers, Pekka Kujala, Maaike van den Born, Miranda Cozijnsen, Andrea Haegebarth, Jeroen Korving, Harry Begthel, Peter J Peters,[...]. Nature 2007
14

Sustained in vitro intestinal epithelial culture within a Wnt-dependent stem cell niche.
Akifumi Ootani, Xingnan Li, Eugenio Sangiorgi, Quoc T Ho, Hiroo Ueno, Shuji Toda, Hajime Sugihara, Kazuma Fujimoto, Irving L Weissman, Mario R Capecchi,[...]. Nat Med 2009
572
14

Flow-enhanced vascularization and maturation of kidney organoids in vitro.
Kimberly A Homan, Navin Gupta, Katharina T Kroll, David B Kolesky, Mark Skylar-Scott, Tomoya Miyoshi, Donald Mau, M Todd Valerius, Thomas Ferrante, Joseph V Bonventre,[...]. Nat Methods 2019
302
13

Assembly of functionally integrated human forebrain spheroids.
Fikri Birey, Jimena Andersen, Christopher D Makinson, Saiful Islam, Wu Wei, Nina Huber, H Christina Fan, Kimberly R Cordes Metzler, Georgia Panagiotakos, Nicholas Thom,[...]. Nature 2017
580
13

Embryonic stem cell lines derived from human blastocysts.
J A Thomson, J Itskovitz-Eldor, S S Shapiro, M A Waknitz, J J Swiergiel, V S Marshall, J M Jones. Science 1998
13

Development of a primary human Small Intestine-on-a-Chip using biopsy-derived organoids.
Magdalena Kasendra, Alessio Tovaglieri, Alexandra Sontheimer-Phelps, Sasan Jalili-Firoozinezhad, Amir Bein, Angeliki Chalkiadaki, William Scholl, Cheng Zhang, Hannah Rickner, Camilla A Richmond,[...]. Sci Rep 2018
315
13

Generation of tissue-engineered small intestine using embryonic stem cell-derived human intestinal organoids.
Stacy R Finkbeiner, Jennifer J Freeman, Minna M Wieck, Wael El-Nachef, Christopher H Altheim, Yu-Hwai Tsai, Sha Huang, Rachel Dyal, Eric S White, Tracy C Grikscheit,[...]. Biol Open 2015
102
13

Functional engraftment of colon epithelium expanded in vitro from a single adult Lgr5⁺ stem cell.
Shiro Yui, Tetsuya Nakamura, Toshiro Sato, Yasuhiro Nemoto, Tomohiro Mizutani, Xiu Zheng, Shizuko Ichinose, Takashi Nagaishi, Ryuichi Okamoto, Kiichiro Tsuchiya,[...]. Nat Med 2012
496
13

Kidney organoids from human iPS cells contain multiple lineages and model human nephrogenesis.
Minoru Takasato, Pei X Er, Han S Chiu, Barbara Maier, Gregory J Baillie, Charles Ferguson, Robert G Parton, Ernst J Wolvetang, Matthias S Roost, Susana M Chuva de Sousa Lopes,[...]. Nature 2015
771
13

Wnt/β-catenin promotes gastric fundus specification in mice and humans.
Kyle W McCracken, Eitaro Aihara, Baptiste Martin, Calyn M Crawford, Taylor Broda, Julie Treguier, Xinghao Zhang, John M Shannon, Marshall H Montrose, James M Wells. Nature 2017
121
13

Self-organized formation of polarized cortical tissues from ESCs and its active manipulation by extrinsic signals.
Mototsugu Eiraku, Kiichi Watanabe, Mami Matsuo-Takasaki, Masako Kawada, Shigenobu Yonemura, Michiru Matsumura, Takafumi Wataya, Ayaka Nishiyama, Keiko Muguruma, Yoshiki Sasai. Cell Stem Cell 2008
879
12

Disease modelling in human organoids.
Madeline A Lancaster, Meritxell Huch. Dis Model Mech 2019
160
12


A primary human macrophage-enteroid co-culture model to investigate mucosal gut physiology and host-pathogen interactions.
Gaelle Noel, Nicholas W Baetz, Janet F Staab, Mark Donowitz, Olga Kovbasnjuk, Marcela F Pasetti, Nicholas C Zachos. Sci Rep 2017
207
12

A complex human gut microbiome cultured in an anaerobic intestine-on-a-chip.
Sasan Jalili-Firoozinezhad, Francesca S Gazzaniga, Elizabeth L Calamari, Diogo M Camacho, Cicely W Fadel, Amir Bein, Ben Swenor, Bret Nestor, Michael J Cronce, Alessio Tovaglieri,[...]. Nat Biomed Eng 2019
277
12

Controlling Epithelial Polarity: A Human Enteroid Model for Host-Pathogen Interactions.
Julia Y Co, Mar Margalef-Català, Xingnan Li, Amanda T Mah, Calvin J Kuo, Denise M Monack, Manuel R Amieva. Cell Rep 2019
173
12

Induction of pluripotent stem cells from adult human fibroblasts by defined factors.
Kazutoshi Takahashi, Koji Tanabe, Mari Ohnuki, Megumi Narita, Tomoko Ichisaka, Kiichiro Tomoda, Shinya Yamanaka. Cell 2007
12

Extracellular matrix hydrogel derived from decellularized tissues enables endodermal organoid culture.
Giovanni Giuseppe Giobbe, Claire Crowley, Camilla Luni, Sara Campinoti, Moustafa Khedr, Kai Kretzschmar, Martina Maria De Santis, Elisa Zambaiti, Federica Michielin, Laween Meran,[...]. Nat Commun 2019
144
12

A Colorectal Tumor Organoid Library Demonstrates Progressive Loss of Niche Factor Requirements during Tumorigenesis.
Masayuki Fujii, Mariko Shimokawa, Shoichi Date, Ai Takano, Mami Matano, Kosaku Nanki, Yuki Ohta, Kohta Toshimitsu, Yoshihiro Nakazato, Kenta Kawasaki,[...]. Cell Stem Cell 2016
421
12

The enteric nervous system and neurogastroenterology.
John B Furness. Nat Rev Gastroenterol Hepatol 2012
756
12

Persistence and toxin production by Clostridium difficile within human intestinal organoids result in disruption of epithelial paracellular barrier function.
Jhansi L Leslie, Sha Huang, Judith S Opp, Melinda S Nagy, Masayuki Kobayashi, Vincent B Young, Jason R Spence. Infect Immun 2015
204
12

Human organoids: model systems for human biology and medicine.
Jihoon Kim, Bon-Kyoung Koo, Juergen A Knoblich. Nat Rev Mol Cell Biol 2020
467
12

Self-formation of optic cups and storable stratified neural retina from human ESCs.
Tokushige Nakano, Satoshi Ando, Nozomu Takata, Masako Kawada, Keiko Muguruma, Kiyotoshi Sekiguchi, Koichi Saito, Shigenobu Yonemura, Mototsugu Eiraku, Yoshiki Sasai. Cell Stem Cell 2012
851
11

Brain-Region-Specific Organoids Using Mini-bioreactors for Modeling ZIKV Exposure.
Xuyu Qian, Ha Nam Nguyen, Mingxi M Song, Christopher Hadiono, Sarah C Ogden, Christy Hammack, Bing Yao, Gregory R Hamersky, Fadi Jacob, Chun Zhong,[...]. Cell 2016
11

Functional repair of CFTR by CRISPR/Cas9 in intestinal stem cell organoids of cystic fibrosis patients.
Gerald Schwank, Bon-Kyoung Koo, Valentina Sasselli, Johanna F Dekkers, Inha Heo, Turan Demircan, Nobuo Sasaki, Sander Boymans, Edwin Cuppen, Cornelis K van der Ent,[...]. Cell Stem Cell 2013
820
11

A three-dimensional model of human lung development and disease from pluripotent stem cells.
Ya-Wen Chen, Sarah Xuelian Huang, Ana Luisa Rodrigues Toste de Carvalho, Siu-Hong Ho, Mohammad Naimul Islam, Stefano Volpi, Luigi D Notarangelo, Michael Ciancanelli, Jean-Laurent Casanova, Jahar Bhattacharya,[...]. Nat Cell Biol 2017
297
11

Interaction of Salmonella enterica Serovar Typhimurium with Intestinal Organoids Derived from Human Induced Pluripotent Stem Cells.
Jessica L Forbester, David Goulding, Ludovic Vallier, Nicholas Hannan, Christine Hale, Derek Pickard, Subhankar Mukhopadhyay, Gordon Dougan. Infect Immun 2015
162
11

Nonadhesive Alginate Hydrogels Support Growth of Pluripotent Stem Cell-Derived Intestinal Organoids.
Meghan M Capeling, Michael Czerwinski, Sha Huang, Yu-Hwai Tsai, Angeline Wu, Melinda S Nagy, Benjamin Juliar, Nambirajan Sundaram, Yang Song, Woojin M Han,[...]. Stem Cell Reports 2019
94
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.