A citation-based method for searching scientific literature

Nicola Meola, Michal Domanski, Evdoxia Karadoulama, Yun Chen, Coline Gentil, Dennis Pultz, Kristoffer Vitting-Seerup, Søren Lykke-Andersen, Jens S Andersen, Albin Sandelin, Torben Heick Jensen. Mol Cell 2016
Times Cited: 113







List of co-cited articles
1114 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Interaction profiling identifies the human nuclear exosome targeting complex.
Michal Lubas, Marianne S Christensen, Maiken S Kristiansen, Michal Domanski, Lasse G Falkenby, Søren Lykke-Andersen, Jens S Andersen, Andrzej Dziembowski, Torben Heick Jensen. Mol Cell 2011
258
59

The regulation and functions of the nuclear RNA exosome complex.
Cornelia Kilchert, Sina Wittmann, Lidia Vasiljeva. Nat Rev Mol Cell Biol 2016
175
45

The human cap-binding complex is functionally connected to the nuclear RNA exosome.
Peter Refsing Andersen, Michal Domanski, Maiken S Kristiansen, Helena Storvall, Evgenia Ntini, Celine Verheggen, Aleks Schein, Jakob Bunkenborg, Ina Poser, Marie Hallais,[...]. Nat Struct Mol Biol 2013
142
43

The human nuclear exosome targeting complex is loaded onto newly synthesized RNA to direct early ribonucleolysis.
Michal Lubas, Peter Refsing Andersen, Aleks Schein, Andrzej Dziembowski, Grzegorz Kudla, Torben Heick Jensen. Cell Rep 2015
103
32

An Mtr4/ZFC3H1 complex facilitates turnover of unstable nuclear RNAs to prevent their cytoplasmic transport and global translational repression.
Koichi Ogami, Patricia Richard, Yaqiong Chen, Mainul Hoque, Wencheng Li, James J Moresco, John R Yates, Bin Tian, James L Manley. Genes Dev 2017
49
63

Exosome cofactor hMTR4 competes with export adaptor ALYREF to ensure balanced nuclear RNA pools for degradation and export.
Jing Fan, Bin Kuai, Guifen Wu, Xudong Wu, Binkai Chi, Lantian Wang, Ke Wang, Zhubing Shi, Heng Zhang, She Chen,[...]. EMBO J 2017
46
63


RNA degradation by the exosome is promoted by a nuclear polyadenylation complex.
John LaCava, Jonathan Houseley, Cosmin Saveanu, Elisabeth Petfalski, Elizabeth Thompson, Alain Jacquier, David Tollervey. Cell 2005
667
26

Mutually Exclusive CBC-Containing Complexes Contribute to RNA Fate.
Simone Giacometti, Nour El Houda Benbahouche, Michal Domanski, Marie-Cécile Robert, Nicola Meola, Michal Lubas, Jakob Bukenborg, Jens S Andersen, Wiebke M Schulze, Celine Verheggen,[...]. Cell Rep 2017
39
64

RNA exosome depletion reveals transcription upstream of active human promoters.
Pascal Preker, Jesper Nielsen, Susanne Kammler, Søren Lykke-Andersen, Marianne S Christensen, Christophe K Mapendano, Mikkel H Schierup, Torben Heick Jensen. Science 2008
519
25


Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase.
Françoise Wyers, Mathieu Rougemaille, Gwenaël Badis, Jean-Claude Rousselle, Marie-Elisabeth Dufour, Jocelyne Boulay, Béatrice Régnault, Frédéric Devaux, Abdelkader Namane, Bertrand Séraphin,[...]. Cell 2005
650
24

CBC-ARS2 stimulates 3'-end maturation of multiple RNA families and favors cap-proximal processing.
Marie Hallais, Frédéric Pontvianne, Peter Refsing Andersen, Marcello Clerici, Daniela Lener, Nour El Houda Benbahouche, Thierry Gostan, Franck Vandermoere, Marie-Cécile Robert, Stephen Cusack,[...]. Nat Struct Mol Biol 2013
97
24

Mtr4-like protein coordinates nuclear RNA processing for heterochromatin assembly and for telomere maintenance.
Nathan N Lee, Venkata R Chalamcharla, Francisca Reyes-Turcu, Sameet Mehta, Martin Zofall, Vanivilasini Balachandran, Jothy Dhakshnamoorthy, Nitika Taneja, Soichiro Yamanaka, Ming Zhou,[...]. Cell 2013
114
24

The fission yeast MTREC complex targets CUTs and unspliced pre-mRNAs to the nuclear exosome.
Yang Zhou, Jianguo Zhu, Géza Schermann, Corina Ohle, Katja Bendrin, Rie Sugioka-Sugiyama, Tomoyasu Sugiyama, Tamás Fischer. Nat Commun 2015
59
38


The RNA Exosome Adaptor ZFC3H1 Functionally Competes with Nuclear Export Activity to Retain Target Transcripts.
Toomas Silla, Evdoxia Karadoulama, Dawid Mąkosa, Michal Lubas, Torben Heick Jensen. Cell Rep 2018
29
75

Polyadenylation-dependent control of long noncoding RNA expression by the poly(A)-binding protein nuclear 1.
Yves B Beaulieu, Claudia L Kleinman, Anne-Marie Landry-Voyer, Jacek Majewski, François Bachand. PLoS Genet 2012
99
21

Reconstitution, activities, and structure of the eukaryotic RNA exosome.
Quansheng Liu, Jaclyn C Greimann, Christopher D Lima. Cell 2006
397
19

Canonical Poly(A) Polymerase Activity Promotes the Decay of a Wide Variety of Mammalian Nuclear RNAs.
Stefan M Bresson, Olga V Hunter, Allyson C Hunter, Nicholas K Conrad. PLoS Genet 2015
54
35

ARS2 is a general suppressor of pervasive transcription.
Claudia Iasillo, Manfred Schmid, Yousra Yahia, Muhammad A Maqbool, Nicolas Descostes, Evdoxia Karadoulama, Edouard Bertrand, Jean-Christophe Andrau, Torben Heick Jensen. Nucleic Acids Res 2017
35
54

Post-transcriptional regulation of meiotic genes by a nuclear RNA silencing complex.
Emily D Egan, Craig R Braun, Steven P Gygi, Danesh Moazed. RNA 2014
67
26

RNA decay machines: the exosome.
Aleksander Chlebowski, Michał Lubas, Torben Heick Jensen, Andrzej Dziembowski. Biochim Biophys Acta 2013
150
17

Crystal structure of an RNA-bound 11-subunit eukaryotic exosome complex.
Debora Lika Makino, Marc Baumgärtner, Elena Conti. Nature 2013
156
16

The Exosome Is Recruited to RNA Substrates through Specific Adaptor Proteins.
Matthias Thoms, Emma Thomson, Jochen Baßler, Marén Gnädig, Sabine Griesel, Ed Hurt. Cell 2015
112
16

Polyadenylation site-induced decay of upstream transcripts enforces promoter directionality.
Evgenia Ntini, Aino I Järvelin, Jette Bornholdt, Yun Chen, Mette Boyd, Mette Jørgensen, Robin Andersson, Ilka Hoof, Aleks Schein, Peter R Andersen,[...]. Nat Struct Mol Biol 2013
176
16

Helicase-Dependent RNA Decay Illuminated by a Cryo-EM Structure of a Human Nuclear RNA Exosome-MTR4 Complex.
Eva-Maria Weick, M Rhyan Puno, Kurt Januszyk, John C Zinder, Michael A DiMattia, Christopher D Lima. Cell 2018
53
30

The human core exosome interacts with differentially localized processive RNases: hDIS3 and hDIS3L.
Rafal Tomecki, Maiken S Kristiansen, Søren Lykke-Andersen, Aleksander Chlebowski, Katja M Larsen, Roman J Szczesny, Karolina Drazkowska, Agnieszka Pastula, Jens S Andersen, Piotr P Stepien,[...]. EMBO J 2010
164
15

The exosome-binding factors Rrp6 and Rrp47 form a composite surface for recruiting the Mtr4 helicase.
Benjamin Schuch, Monika Feigenbutz, Debora L Makino, Sebastian Falk, Claire Basquin, Phil Mitchell, Elena Conti. EMBO J 2014
67
22

A single subunit, Dis3, is essentially responsible for yeast exosome core activity.
Andrzej Dziembowski, Esben Lorentzen, Elena Conti, Bertrand Séraphin. Nat Struct Mol Biol 2007
317
15


A new yeast poly(A) polymerase complex involved in RNA quality control.
Stepánka Vanácová, Jeannette Wolf, Georges Martin, Diana Blank, Sabine Dettwiler, Arno Friedlein, Hanno Langen, Gérard Keith, Walter Keller. PLoS Biol 2005
451
14

RBM7 subunit of the NEXT complex binds U-rich sequences and targets 3'-end extended forms of snRNAs.
Dominika Hrossova, Tomas Sikorsky, David Potesil, Marek Bartosovic, Josef Pasulka, Zbynek Zdrahal, Richard Stefl, Stepanka Vanacova. Nucleic Acids Res 2015
35
40

RNA degradation paths in a 12-subunit nuclear exosome complex.
Debora Lika Makino, Benjamin Schuch, Elisabeth Stegmann, Marc Baumgärtner, Claire Basquin, Elena Conti. Nature 2015
88
15

The yeast exosome and human PM-Scl are related complexes of 3' --> 5' exonucleases.
C Allmang, E Petfalski, A Podtelejnikov, M Mann, D Tollervey, P Mitchell. Genes Dev 1999
360
14

Selective elimination of messenger RNA prevents an incidence of untimely meiosis.
Yuriko Harigaya, Hirotsugu Tanaka, Soichiro Yamanaka, Kayoko Tanaka, Yoshinori Watanabe, Chihiro Tsutsumi, Yuji Chikashige, Yasushi Hiraoka, Akira Yamashita, Masayuki Yamamoto. Nature 2006
220
14

Threading the barrel of the RNA exosome.
Claudia Schneider, David Tollervey. Trends Biochem Sci 2013
82
17


Controlling nuclear RNA levels.
Manfred Schmid, Torben Heick Jensen. Nat Rev Genet 2018
51
27

DIS3 shapes the RNA polymerase II transcriptome in humans by degrading a variety of unwanted transcripts.
Teresa Szczepińska, Katarzyna Kalisiak, Rafal Tomecki, Anna Labno, Lukasz S Borowski, Tomasz M Kulinski, Dorota Adamska, Joanna Kosinska, Andrzej Dziembowski. Genome Res 2015
45
28

Structure of an Rrp6-RNA exosome complex bound to poly(A) RNA.
Elizabeth V Wasmuth, Kurt Januszyk, Christopher D Lima. Nature 2014
93
13

Structure of the RBM7-ZCCHC8 core of the NEXT complex reveals connections to splicing factors.
Sebastian Falk, Ksenia Finogenova, Mireille Melko, Christian Benda, Søren Lykke-Andersen, Torben Heick Jensen, Elena Conti. Nat Commun 2016
23
56

The molecular architecture of the TRAMP complex reveals the organization and interplay of its two catalytic activities.
Sebastian Falk, John R Weir, Jendrik Hentschel, Peter Reichelt, Fabien Bonneau, Elena Conti. Mol Cell 2014
46
28

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
13

The RNA exosome and RNA exosome-linked disease.
Derrick J Morton, Emily G Kuiper, Stephanie K Jones, Sara W Leung, Anita H Corbett, Milo B Fasken. RNA 2018
55
23

The eukaryotic RNA exosome.
Kurt Januszyk, Christopher D Lima. Curr Opin Struct Biol 2014
93
13


An atlas of active enhancers across human cell types and tissues.
Robin Andersson, Claudia Gebhard, Irene Miguel-Escalada, Ilka Hoof, Jette Bornholdt, Mette Boyd, Yun Chen, Xiaobei Zhao, Christian Schmidl, Takahiro Suzuki,[...]. Nature 2014
12

Endonucleolytic RNA cleavage by a eukaryotic exosome.
Alice Lebreton, Rafal Tomecki, Andrzej Dziembowski, Bertrand Séraphin. Nature 2008
238
12



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.