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Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
Charlotte O'Shea, Lasse Staby, Sidsel Krogh Bendsen, Frederik Grønbæk Tidemand, Andreas Redsted, Martin Willemoës, Birthe B Kragelund, Karen Skriver. J Biol Chem 2017
Times Cited: 37






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List of co-cited articles
563 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Unequally redundant RCD1 and SRO1 mediate stress and developmental responses and interact with transcription factors.
Pinja Jaspers, Tiina Blomster, Mikael Brosché, Jarkko Salojärvi, Reetta Ahlfors, Julia P Vainonen, Ramesha A Reddy, Richard Immink, Gerco Angenent, Franziska Turck,[...]. Plant J 2009
112
14
37

Order by disorder in plant signaling.
Birthe B Kragelund, Michael Krogh Jensen, Karen Skriver. Trends Plant Sci 2012
49
14
37

Protein intrinsic disorder in Arabidopsis NAC transcription factors: transcriptional activation by ANAC013 and ANAC046 and their interactions with RCD1.
Charlotte O'Shea, Mikael Kryger, Emil G P Stender, Birthe B Kragelund, Martin Willemoës, Karen Skriver. Biochem J 2015
37
14
37

Intrinsically disordered proteins in cellular signalling and regulation.
Peter E Wright, H Jane Dyson. Nat Rev Mol Cell Biol 2015
1265
14
37

Structure of Radical-Induced Cell Death1 Hub Domain Reveals a Common αα-Scaffold for Disorder in Transcriptional Networks.
Katrine Bugge, Lasse Staby, Katherine R Kemplen, Charlotte O'Shea, Sidsel K Bendsen, Mikael K Jensen, Johan G Olsen, Karen Skriver, Birthe B Kragelund. Structure 2018
19
14
73

RCD1-DREB2A interaction in leaf senescence and stress responses in Arabidopsis thaliana.
Julia P Vainonen, Pinja Jaspers, Michael Wrzaczek, Airi Lamminmäki, Ramesha A Reddy, Lauri Vaahtera, Mikael Brosché, Jaakko Kangasjärvi. Biochem J 2012
67
13
35

Eukaryotic transcription factors: paradigms of protein intrinsic disorder.
Lasse Staby, Charlotte O'Shea, Martin Willemoës, Frederik Theisen, Birthe B Kragelund, Karen Skriver. Biochem J 2017
75
13
35

Senescence-associated barley NAC (NAM, ATAF1,2, CUC) transcription factor interacts with radical-induced cell death 1 through a disordered regulatory domain.
Trine Kjaersgaard, Michael K Jensen, Michael W Christiansen, Per Gregersen, Birthe B Kragelund, Karen Skriver. J Biol Chem 2011
56
12
32

Intrinsic disorder in transcription factors.
Jiangang Liu, Narayanan B Perumal, Christopher J Oldfield, Eric W Su, Vladimir N Uversky, A Keith Dunker. Biochemistry 2006
501
11
29

Extreme disorder in an ultrahigh-affinity protein complex.
Alessandro Borgia, Madeleine B Borgia, Katrine Bugge, Vera M Kissling, Pétur O Heidarsson, Catarina B Fernandes, Andrea Sottini, Andrea Soranno, Karin J Buholzer, Daniel Nettels,[...]. Nature 2018
342
11
29

Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation.
Kim Van Roey, Bora Uyar, Robert J Weatheritt, Holger Dinkel, Markus Seiler, Aidan Budd, Toby J Gibson, Norman E Davey. Chem Rev 2014
251
10
27

Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm.
P E Wright, H J Dyson. J Mol Biol 1999
2131
9
24

Conformational propensities of intrinsically disordered proteins influence the mechanism of binding and folding.
Munehito Arai, Kenji Sugase, H Jane Dyson, Peter E Wright. Proc Natl Acad Sci U S A 2015
162
9
24

Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners.
Christopher J Oldfield, Jingwei Meng, Jack Y Yang, Mary Qu Yang, Vladimir N Uversky, A Keith Dunker. BMC Genomics 2008
437
9
24

Classification of intrinsically disordered regions and proteins.
Robin van der Lee, Marija Buljan, Benjamin Lang, Robert J Weatheritt, Gary W Daughdrill, A Keith Dunker, Monika Fuxreiter, Julian Gough, Joerg Gsponer, David T Jones,[...]. Chem Rev 2014
1155
9
24

Dual function of an Arabidopsis transcription factor DREB2A in water-stress-responsive and heat-stress-responsive gene expression.
Yoh Sakuma, Kyonoshin Maruyama, Feng Qin, Yuriko Osakabe, Kazuo Shinozaki, Kazuko Yamaguchi-Shinozaki. Proc Natl Acad Sci U S A 2006
417
9
24

Role of Intrinsic Protein Disorder in the Function and Interactions of the Transcriptional Coactivators CREB-binding Protein (CBP) and p300.
H Jane Dyson, Peter E Wright. J Biol Chem 2016
171
9
24

NMRPipe: a multidimensional spectral processing system based on UNIX pipes.
F Delaglio, S Grzesiek, G W Vuister, G Zhu, J Pfeifer, A Bax. J Biomol NMR 1995
12249
9
24

Hypersensitive termination of the hypoxic response by a disordered protein switch.
Rebecca B Berlow, H Jane Dyson, Peter E Wright. Nature 2017
95
9
24

Short linear motifs - ex nihilo evolution of protein regulation.
Norman E Davey, Martha S Cyert, Alan M Moses. Cell Commun Signal 2015
116
8
21

Attributes of short linear motifs.
Norman E Davey, Kim Van Roey, Robert J Weatheritt, Grischa Toedt, Bora Uyar, Brigitte Altenberg, Aidan Budd, Francesca Diella, Holger Dinkel, Toby J Gibson. Mol Biosyst 2012
367
8
21

The PCNA interaction motifs revisited: thinking outside the PIP-box.
Andreas Prestel, Nanna Wichmann, Joao M Martins, Riccardo Marabini, Noah Kassem, Sebastian S Broendum, Marit Otterlei, Olaf Nielsen, Martin Willemoës, Michael Ploug,[...]. Cell Mol Life Sci 2019
45
8
21

Interactions by Disorder - A Matter of Context.
Katrine Bugge, Inna Brakti, Catarina B Fernandes, Jesper E Dreier, Jeppe E Lundsgaard, Johan G Olsen, Karen Skriver, Birthe B Kragelund. Front Mol Biosci 2020
56
8
21

The RST and PARP-like domain containing SRO protein family: analysis of protein structure, function and conservation in land plants.
Pinja Jaspers, Kirk Overmyer, Michael Wrzaczek, Julia P Vainonen, Tiina Blomster, Jarkko Salojärvi, Ramesha A Reddy, Jaakko Kangasjärvi. BMC Genomics 2010
72
7
18

The Arabidopsis thaliana NAC transcription factor family: structure-function relationships and determinants of ANAC019 stress signalling.
Michael K Jensen, Trine Kjaersgaard, Michael M Nielsen, Pernille Galberg, Klaus Petersen, Charlotte O'Shea, Karen Skriver. Biochem J 2010
224
7
18

Intrinsically unstructured proteins and their functions.
H Jane Dyson, Peter E Wright. Nat Rev Mol Cell Biol 2005
2820
7
18

The CCPN data model for NMR spectroscopy: development of a software pipeline.
Wim F Vranken, Wayne Boucher, Tim J Stevens, Rasmus H Fogh, Anne Pajon, Miguel Llinas, Eldon L Ulrich, John L Markley, John Ionides, Ernest D Laue. Proteins 2005
2276
7
18

Arabidopsis downy mildew effector HaRxL106 suppresses plant immunity by binding to RADICAL-INDUCED CELL DEATH1.
Lennart Wirthmueller, Shuta Asai, Ghanasyam Rallapalli, Jan Sklenar, Georgina Fabro, Dae Sung Kim, Ruth Lintermann, Pinja Jaspers, Michael Wrzaczek, Jaakko Kangasjärvi,[...]. New Phytol 2018
28
7
25

Effective concentrations enforced by intrinsically disordered linkers are governed by polymer physics.
Charlotte S Sørensen, Magnus Kjaergaard. Proc Natl Acad Sci U S A 2019
56
7
18

Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors.
Alexey Shapiguzov, Julia P Vainonen, Kerri Hunter, Helena Tossavainen, Arjun Tiwari, Sari Järvi, Maarit Hellman, Fayezeh Aarabi, Saleh Alseekh, Brecht Wybouw,[...]. Elife 2019
76
7
18

Evolutionary conservation of the intrinsic disorder-based Radical-Induced Cell Death1 hub interactome.
Lise Friis Christensen, Lasse Staby, Katrine Bugge, Charlotte O'Shea, Birthe B Kragelund, Karen Skriver. Sci Rep 2019
13
7
53

The paralogous genes RADICAL-INDUCED CELL DEATH1 and SIMILAR TO RCD ONE1 have partially redundant functions during Arabidopsis development.
Sachin Teotia, Rebecca S Lamb. Plant Physiol 2009
55
6
16

Fuzzy complexes: polymorphism and structural disorder in protein-protein interactions.
Peter Tompa, Monika Fuxreiter. Trends Biochem Sci 2008
745
6
16

A million peptide motifs for the molecular biologist.
Peter Tompa, Norman E Davey, Toby J Gibson, M Madan Babu. Mol Cell 2014
300
6
16

Intrinsically disordered protein.
A K Dunker, J D Lawson, C J Brown, R M Williams, P Romero, J S Oh, C J Oldfield, A M Campen, C M Ratliff, K W Hipps,[...]. J Mol Graph Model 2001
1644
6
16

The membrane-bound NAC transcription factor ANAC013 functions in mitochondrial retrograde regulation of the oxidative stress response in Arabidopsis.
Inge De Clercq, Vanessa Vermeirssen, Olivier Van Aken, Klaas Vandepoele, Monika W Murcha, Simon R Law, Annelies Inzé, Sophia Ng, Aneta Ivanova, Debbie Rombaut,[...]. Plant Cell 2013
215
6
16

Transcriptomics and functional genomics of ROS-induced cell death regulation by RADICAL-INDUCED CELL DEATH1.
Mikael Brosché, Tiina Blomster, Jarkko Salojärvi, Fuqiang Cui, Nina Sipari, Johanna Leppälä, Airi Lamminmäki, Gloria Tomai, Shaman Narayanasamy, Ramesha A Reddy,[...]. PLoS Genet 2014
52
6
16

Subgroup-specific intrinsic disorder profiles of Arabidopsis NAC transcription factors: Identification of functional hotspots.
Emil G Stender, Charlotte O'Shea, Karen Skriver. Plant Signal Behav 2015
10
6
60

The acidic transcription activator Gcn4 binds the mediator subunit Gal11/Med15 using a simple protein interface forming a fuzzy complex.
Peter S Brzovic, Clemens C Heikaus, Leonid Kisselev, Robert Vernon, Eric Herbig, Derek Pacheco, Linda Warfield, Peter Littlefield, David Baker, Rachel E Klevit,[...]. Mol Cell 2011
124
6
16

Mechanism of coupled folding and binding of an intrinsically disordered protein.
Kenji Sugase, H Jane Dyson, Peter E Wright. Nature 2007
795
6
16

Evidence for dynamically organized modularity in the yeast protein-protein interaction network.
Jing-Dong J Han, Nicolas Bertin, Tong Hao, Debra S Goldberg, Gabriel F Berriz, Lan V Zhang, Denis Dupuy, Albertha J M Walhout, Michael E Cusick, Frederick P Roth,[...]. Nature 2004
1102
6
16

Binding Rate Constants Reveal Distinct Features of Disordered Protein Domains.
Jakob Dogan, Josefin Jonasson, Eva Andersson, Per Jemth. Biochemistry 2015
44
6
16

Sequence correction of random coil chemical shifts: correlation between neighbor correction factors and changes in the Ramachandran distribution.
Magnus Kjaergaard, Flemming M Poulsen. J Biomol NMR 2011
170
6
16

IUPred2A: context-dependent prediction of protein disorder as a function of redox state and protein binding.
Bálint Mészáros, Gábor Erdos, Zsuzsanna Dosztányi. Nucleic Acids Res 2018
615
6
16

Coupling of folding and binding for unstructured proteins.
H Jane Dyson, Peter E Wright. Curr Opin Struct Biol 2002
1024
6
16

Short linear motif core and flanking regions modulate retinoblastoma protein binding affinity and specificity.
Nicolás Palopoli, Nicolás S González Foutel, Toby J Gibson, Lucía B Chemes. Protein Eng Des Sel 2018
20
6
30

Modulation of Intrinsically Disordered Protein Function by Post-translational Modifications.
Alaji Bah, Julie D Forman-Kay. J Biol Chem 2016
273
6
16

High-throughput discovery of functional disordered regions: investigation of transactivation domains.
Charles Nj Ravarani, Tamara Y Erkina, Greet De Baets, Daniel C Dudman, Alexandre M Erkine, M Madan Babu. Mol Syst Biol 2018
49
6
16

Biomolecular condensates: organizers of cellular biochemistry.
Salman F Banani, Hyun O Lee, Anthony A Hyman, Michael K Rosen. Nat Rev Mol Cell Biol 2017
2061
6
16

Helical propensity in an intrinsically disordered protein accelerates ligand binding.
Vytautas Iešmantavičius, Jakob Dogan, Per Jemth, Kaare Teilum, Magnus Kjaergaard. Angew Chem Int Ed Engl 2014
127
6
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.

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