A citation-based method for searching scientific literature

Devin C Koestler, Joseph Usset, Brock C Christensen, Carmen J Marsit, Margaret R Karagas, Karl T Kelsey, John K Wiencke. Cancer Epidemiol Biomarkers Prev 2017
Times Cited: 42







List of co-cited articles
200 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


DNA methylation arrays as surrogate measures of cell mixture distribution.
Eugene Andres Houseman, William P Accomando, Devin C Koestler, Brock C Christensen, Carmen J Marsit, Heather H Nelson, John K Wiencke, Karl T Kelsey. BMC Bioinformatics 2012
66

Immunomethylomic approach to explore the blood neutrophil lymphocyte ratio (NLR) in glioma survival.
John K Wiencke, Devin C Koestler, Lucas A Salas, Joseph L Wiemels, Ritu P Roy, Helen M Hansen, Terri Rice, Lucie S McCoy, Paige M Bracci, Annette M Molinaro,[...]. Clin Epigenetics 2017
38
39

An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray.
Lucas A Salas, Devin C Koestler, Rondi A Butler, Helen M Hansen, John K Wiencke, Karl T Kelsey, Brock C Christensen. Genome Biol 2018
97
33

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.
Martin J Aryee, Andrew E Jaffe, Hector Corrada-Bravo, Christine Ladd-Acosta, Andrew P Feinberg, Kasper D Hansen, Rafael A Irizarry. Bioinformatics 2014
28

Differential DNA methylation in purified human blood cells: implications for cell lineage and studies on disease susceptibility.
Lovisa E Reinius, Nathalie Acevedo, Maaike Joerink, Göran Pershagen, Sven-Erik Dahlén, Dario Greco, Cilla Söderhäll, Annika Scheynius, Juha Kere. PLoS One 2012
655
28

Improving cell mixture deconvolution by identifying optimal DNA methylation libraries (IDOL).
Devin C Koestler, Meaghan J Jones, Joseph Usset, Brock C Christensen, Rondi A Butler, Michael S Kobor, John K Wiencke, Karl T Kelsey. BMC Bioinformatics 2016
66
26

Cell-type deconvolution from DNA methylation: a review of recent applications.
Alexander J Titus, Rachel M Gallimore, Lucas A Salas, Brock C Christensen. Hum Mol Genet 2017
68
26

Methylation-derived Neutrophil-to-Lymphocyte Ratio and Lung Cancer Risk in Heavy Smokers.
Laurie Grieshober, Stefan Graw, Matt J Barnett, Mark D Thornquist, Gary E Goodman, Chu Chen, Devin C Koestler, Carmen J Marsit, Jennifer A Doherty. Cancer Prev Res (Phila) 2018
20
55

Prognostic role of neutrophil-to-lymphocyte ratio in solid tumors: a systematic review and meta-analysis.
Arnoud J Templeton, Mairéad G McNamara, Boštjan Šeruga, Francisco E Vera-Badillo, Priya Aneja, Alberto Ocaña, Raya Leibowitz-Amit, Guru Sonpavde, Jennifer J Knox, Ben Tran,[...]. J Natl Cancer Inst 2014
23

Quantitative reconstruction of leukocyte subsets using DNA methylation.
William P Accomando, John K Wiencke, E Andres Houseman, Heather H Nelson, Karl T Kelsey. Genome Biol 2014
95
21

Hallmarks of cancer: the next generation.
Douglas Hanahan, Robert A Weinberg. Cell 2011
21

DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases.
Symen Ligthart, Carola Marzi, Stella Aslibekyan, Michael M Mendelson, Karen N Conneely, Toshiko Tanaka, Elena Colicino, Lindsay L Waite, Roby Joehanes, Weihua Guan,[...]. Genome Biol 2016
155
21


A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies.
Andrew E Teschendorff, Charles E Breeze, Shijie C Zheng, Stephan Beck. BMC Bioinformatics 2017
133
19

Blood-based profiles of DNA methylation predict the underlying distribution of cell types: a validation analysis.
Devin C Koestler, Brock Christensen, Margaret R Karagas, Carmen J Marsit, Scott M Langevin, Karl T Kelsey, John K Wiencke, E Andres Houseman. Epigenetics 2013
158
16


A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data.
Andrew E Teschendorff, Francesco Marabita, Matthias Lechner, Thomas Bartlett, Jesper Tegner, David Gomez-Cabrero, Stephan Beck. Bioinformatics 2013
813
16

The systemic inflammation-based neutrophil-lymphocyte ratio: experience in patients with cancer.
Graeme J K Guthrie, Kellie A Charles, Campbell S D Roxburgh, Paul G Horgan, Donald C McMillan, Stephen J Clarke. Crit Rev Oncol Hematol 2013
787
14

Adjusting batch effects in microarray expression data using empirical Bayes methods.
W Evan Johnson, Cheng Li, Ariel Rabinovic. Biostatistics 2007
14

DNA methylation of cord blood cell types: Applications for mixed cell birth studies.
Kelly M Bakulski, Jason I Feinberg, Shan V Andrews, Jack Yang, Shannon Brown, Stephanie L McKenney, Frank Witter, Jeremy Walston, Andrew P Feinberg, M Daniele Fallin. Epigenetics 2016
176
14

missMethyl: an R package for analyzing data from Illumina's HumanMethylation450 platform.
Belinda Phipson, Jovana Maksimovic, Alicia Oshlack. Bioinformatics 2016
291
14

ENmix: a novel background correction method for Illumina HumanMethylation450 BeadChip.
Zongli Xu, Liang Niu, Leping Li, Jack A Taylor. Nucleic Acids Res 2016
141
14


DNA Methylation in Whole Blood: Uses and Challenges.
E Andres Houseman, Stephanie Kim, Karl T Kelsey, John K Wiencke. Curr Environ Health Rep 2015
81
11

Epigenetic Signatures of Cigarette Smoking.
Roby Joehanes, Allan C Just, Riccardo E Marioni, Luke C Pilling, Lindsay M Reynolds, Pooja R Mandaviya, Weihua Guan, Tao Xu, Cathy E Elks, Stella Aslibekyan,[...]. Circ Cardiovasc Genet 2016
394
11

Robust enumeration of cell subsets from tissue expression profiles.
Aaron M Newman, Chih Long Liu, Michael R Green, Andrew J Gentles, Weiguo Feng, Yue Xu, Chuong D Hoang, Maximilian Diehn, Ash A Alizadeh. Nat Methods 2015
11

Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling.
Ruth Pidsley, Elena Zotenko, Timothy J Peters, Mitchell G Lawrence, Gail P Risbridger, Peter Molloy, Susan Van Djik, Beverly Muhlhausler, Clare Stirzaker, Susan J Clark. Genome Biol 2016
457
11

Immunomethylomics: A Novel Cancer Risk Prediction Tool.
Karl T Kelsey, John K Wiencke. Ann Am Thorac Soc 2018
12
41

Myeloid-derived suppressor cells as regulators of the immune system.
Dmitry I Gabrilovich, Srinivas Nagaraj. Nat Rev Immunol 2009
9

Cell-composition effects in the analysis of DNA methylation array data: a mathematical perspective.
E Andres Houseman, Karl T Kelsey, John K Wiencke, Carmen J Marsit. BMC Bioinformatics 2015
55
9

Genome-wide methylation profiles reveal quantitative views of human aging rates.
Gregory Hannum, Justin Guinney, Ling Zhao, Li Zhang, Guy Hughes, SriniVas Sadda, Brandy Klotzle, Marina Bibikova, Jian-Bing Fan, Yuan Gao,[...]. Mol Cell 2013
9

Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis.
Yun Liu, Martin J Aryee, Leonid Padyukov, M Daniele Fallin, Espen Hesselberg, Arni Runarsson, Lovisa Reinius, Nathalie Acevedo, Margaret Taub, Marcus Ronninger,[...]. Nat Biotechnol 2013
599
9

Cell type specific DNA methylation in cord blood: A 450K-reference data set and cell count-based validation of estimated cell type composition.
Kristina Gervin, Christian Magnus Page, Hans Christian D Aass, Michelle A Jansen, Heidi Elisabeth Fjeldstad, Bettina Kulle Andreassen, Liesbeth Duijts, Joyce B van Meurs, Menno C van Zelm, Vincent W Jaddoe,[...]. Epigenetics 2016
45
9

Reference-free deconvolution of DNA methylation data and mediation by cell composition effects.
E Andres Houseman, Molly L Kile, David C Christiani, Tan A Ince, Karl T Kelsey, Carmen J Marsit. BMC Bioinformatics 2016
118
9

High neutrophil-to-lymphocyte ratio is an independent marker of poor disease-specific survival in patients with oral cancer.
Christos Perisanidis, Gabriela Kornek, Paul W Pöschl, Daniel Holzinger, Katharina Pirklbauer, Christian Schopper, Rolf Ewers. Med Oncol 2013
70
9


The sva package for removing batch effects and other unwanted variation in high-throughput experiments.
Jeffrey T Leek, W Evan Johnson, Hilary S Parker, Andrew E Jaffe, John D Storey. Bioinformatics 2012
9

Assessing the Role of DNA Methylation-Derived Neutrophil-to-Lymphocyte Ratio in Rheumatoid Arthritis.
Srikant Ambatipudi, Gemma C Sharp, Sarah L N Clarke, Darren Plant, Jonathan H Tobias, David M Evans, Anne Barton, Caroline L Relton. J Immunol Res 2018
8
50


DNA methylation derived systemic inflammation indices are associated with head and neck cancer development and survival.
Srikant Ambatipudi, Ryan Langdon, Rebecca C Richmond, Matthew Suderman, Devin C Koestler, Karl T Kelsey, Nabila Kazmi, Christopher Penfold, Karen M Ho, Wendy McArdle,[...]. Oral Oncol 2018
12
33


Review of processing and analysis methods for DNA methylation array data.
C S Wilhelm-Benartzi, D C Koestler, M R Karagas, J M Flanagan, B C Christensen, K T Kelsey, C J Marsit, E A Houseman, R Brown. Br J Cancer 2013
110
7

Characterizing the hypomethylated DNA methylation profile of nucleated red blood cells from cord blood.
Olivia M de Goede, Pascal M Lavoie, Wendy P Robinson. Epigenomics 2016
14
21

An evaluation of methods correcting for cell-type heterogeneity in DNA methylation studies.
Kevin McGregor, Sasha Bernatsky, Ines Colmegna, Marie Hudson, Tomi Pastinen, Aurélie Labbe, Celia M T Greenwood. Genome Biol 2016
91
7

The DNA methylation profile of activated human natural killer cells.
John K Wiencke, Rondi Butler, George Hsuang, Melissa Eliot, Stephanie Kim, Manuel A Sepulveda, Derick Siegel, E Andres Houseman, Karl T Kelsey. Epigenetics 2016
33
9

Reference-free cell mixture adjustments in analysis of DNA methylation data.
Eugene Andres Houseman, John Molitor, Carmen J Marsit. Bioinformatics 2014
274
7

Enlarged leukocyte referent libraries can explain additional variance in blood-based epigenome-wide association studies.
Stephanie Kim, Melissa Eliot, Devin C Koestler, Eugene A Houseman, James G Wetmur, John K Wiencke, Karl T Kelsey. Epigenomics 2016
9
33

Inflammation and cancer.
Lisa M Coussens, Zena Werb. Nature 2002
7

Aging and environmental exposures alter tissue-specific DNA methylation dependent upon CpG island context.
Brock C Christensen, E Andres Houseman, Carmen J Marsit, Shichun Zheng, Margaret R Wrensch, Joseph L Wiemels, Heather H Nelson, Margaret R Karagas, James F Padbury, Raphael Bueno,[...]. PLoS Genet 2009
688
7



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.