A citation-based method for searching scientific literature

Lauren A Woodward, Justin W Mabin, Pooja Gangras, Guramrit Singh. Wiley Interdiscip Rev RNA 2017
Times Cited: 38







List of co-cited articles
624 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The exon junction complex as a node of post-transcriptional networks.
Hervé Le Hir, Jérôme Saulière, Zhen Wang. Nat Rev Mol Cell Biol 2016
117
52

Exon Junction Complexes: Supervising the Gene Expression Assembly Line.
Volker Boehm, Niels H Gehring. Trends Genet 2016
52
47

The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus.
Guramrit Singh, Alper Kucukural, Can Cenik, John D Leszyk, Scott A Shaffer, Zhiping Weng, Melissa J Moore. Cell 2012
206
34

The Clothes Make the mRNA: Past and Present Trends in mRNP Fashion.
Guramrit Singh, Gabriel Pratt, Gene W Yeo, Melissa J Moore. Annu Rev Biochem 2015
194
31

Exon Junction Complexes Show a Distributional Bias toward Alternatively Spliced mRNAs and against mRNAs Coding for Ribosomal Proteins.
Christian Hauer, Jana Sieber, Thomas Schwarzl, Ina Hollerer, Tomaz Curk, Anne-Marie Alleaume, Matthias W Hentze, Andreas E Kulozik. Cell Rep 2016
34
26

The Exon Junction Complex Undergoes a Compositional Switch that Alters mRNP Structure and Nonsense-Mediated mRNA Decay Activity.
Justin W Mabin, Lauren A Woodward, Robert D Patton, Zhongxia Yi, Mengxuan Jia, Vicki H Wysocki, Ralf Bundschuh, Guramrit Singh. Cell Rep 2018
22
40


CWC22 connects pre-mRNA splicing and exon junction complex assembly.
Anna-Lena Steckelberg, Volker Boehm, Agnieszka M Gromadzka, Niels H Gehring. Cell Rep 2012
74
21

Human spliceosomal protein CWC22 plays a role in coupling splicing to exon junction complex deposition and nonsense-mediated decay.
Andrei Alexandrov, David Colognori, Mei-Di Shu, Joan A Steitz. Proc Natl Acad Sci U S A 2012
55
21

CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex.
Jérôme Saulière, Valentine Murigneux, Zhen Wang, Emélie Marquenet, Isabelle Barbosa, Olivier Le Tonquèze, Yann Audic, Luc Paillard, Hugues Roest Crollius, Hervé Le Hir. Nat Struct Mol Biol 2012
125
21

Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA.
Christian B F Andersen, Lionel Ballut, Jesper S Johansen, Hala Chamieh, Klaus H Nielsen, Cristiano L P Oliveira, Jan Skov Pedersen, Bertrand Séraphin, Hervé Le Hir, Gregers Rom Andersen. Science 2006
283
21

The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA.
Fulvia Bono, Judith Ebert, Esben Lorentzen, Elena Conti. Cell 2006
278
21

Nonsense-mediated mRNA decay: novel mechanistic insights and biological impact.
Evangelos D Karousis, Sofia Nasif, Oliver Mühlemann. Wiley Interdiscip Rev RNA 2016
102
18

The exon junction core complex is locked onto RNA by inhibition of eIF4AIII ATPase activity.
Lionel Ballut, Brice Marchadier, Aurélie Baguet, Catherine Tomasetto, Bertrand Séraphin, Hervé Le Hir. Nat Struct Mol Biol 2005
217
18

Human mRNA export machinery recruited to the 5' end of mRNA.
Hong Cheng, Kobina Dufu, Chung-Sheng Lee, Jeanne L Hsu, Anusha Dias, Robin Reed. Cell 2006
313
18

The exon junction complex in neural development and neurodevelopmental disease.
J J McMahon, E E Miller, D L Silver. Int J Dev Neurosci 2016
26
26

TREX is a conserved complex coupling transcription with messenger RNA export.
Katja Strässer, Seiji Masuda, Paul Mason, Jens Pfannstiel, Marisa Oppizzi, Susana Rodriguez-Navarro, Ana G Rondón, Andres Aguilera, Kevin Struhl, Robin Reed,[...]. Nature 2002
613
18

Haploinsufficiency for Core Exon Junction Complex Components Disrupts Embryonic Neurogenesis and Causes p53-Mediated Microcephaly.
Hanqian Mao, John J McMahon, Yi-Hsuan Tsai, Zefeng Wang, Debra L Silver. PLoS Genet 2016
45
18

Biochemical analysis of the EJC reveals two new factors and a stable tetrameric protein core.
Thomas Ø Tange, Toshiharu Shibuya, Melissa S Jurica, Melissa J Moore. RNA 2005
148
18

The hierarchy of exon-junction complex assembly by the spliceosome explains key features of mammalian nonsense-mediated mRNA decay.
Niels H Gehring, Styliani Lamprinaki, Matthias W Hentze, Andreas E Kulozik. PLoS Biol 2009
85
18

Transcriptome-wide modulation of splicing by the exon junction complex.
Zhen Wang, Valentine Murigneux, Hervé Le Hir. Genome Biol 2014
53
18

Human CWC22 escorts the helicase eIF4AIII to spliceosomes and promotes exon junction complex assembly.
Isabelle Barbosa, Nazmul Haque, Francesca Fiorini, Charlotte Barrandon, Catherine Tomasetto, Marco Blanchette, Hervé Le Hir. Nat Struct Mol Biol 2012
68
18

Exon Junction Complexes can have distinct functional flavours to regulate specific splicing events.
Zhen Wang, Lionel Ballut, Isabelle Barbosa, Hervé Le Hir. Sci Rep 2018
13
53

Disassembly of exon junction complexes by PYM.
Niels H Gehring, Styliani Lamprinaki, Andreas E Kulozik, Matthias W Hentze. Cell 2009
120
18

Exon-junction complex components specify distinct routes of nonsense-mediated mRNA decay with differential cofactor requirements.
Niels H Gehring, Joachim B Kunz, Gabriele Neu-Yilik, Stephen Breit, Marcelo H Viegas, Matthias W Hentze, Andreas E Kulozik. Mol Cell 2005
216
18

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
18

The pioneer round of translation: features and functions.
Lynne E Maquat, Woan-Yuh Tarn, Olaf Isken. Cell 2010
143
15

Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay.
Isao Kashima, Akio Yamashita, Natsuko Izumi, Naoyuki Kataoka, Ryo Morishita, Shinichi Hoshino, Mutsuhito Ohno, Gideon Dreyfuss, Shigeo Ohno. Genes Dev 2006
385
15

eIF4E-bound mRNPs are substrates for nonsense-mediated mRNA decay in mammalian cells.
Simone C Rufener, Oliver Mühlemann. Nat Struct Mol Biol 2013
63
15

Recruitment of the human TREX complex to mRNA during splicing.
Seiji Masuda, Rita Das, Hong Cheng, Ed Hurt, Nijsje Dorman, Robin Reed. Genes Dev 2005
290
15

Contribution of copy number variants involving nonsense-mediated mRNA decay pathway genes to neuro-developmental disorders.
Lam S Nguyen, Hyung-Goo Kim, Jill A Rosenfeld, Yiping Shen, James F Gusella, Yves Lacassie, Lawrence C Layman, Lisa G Shaffer, Jozef Gécz. Hum Mol Genet 2013
73
15

Pre-mRNA splicing imprints mRNA in the nucleus with a novel RNA-binding protein that persists in the cytoplasm.
N Kataoka, J Yong, V N Kim, F Velazquez, R A Perkinson, F Wang, G Dreyfuss. Mol Cell 2000
273
15

Global analyses of UPF1 binding and function reveal expanded scope of nonsense-mediated mRNA decay.
Jessica A Hurt, Alex D Robertson, Christopher B Burge. Genome Res 2013
144
15

The Antagonistic Gene Paralogs Upf3a and Upf3b Govern Nonsense-Mediated RNA Decay.
Eleen Y Shum, Samantha H Jones, Ada Shao, Jennifer Dumdie, Matthew D Krause, Wai-Kin Chan, Chih-Hong Lou, Josh L Espinoza, Hye-Won Song, Mimi H Phan,[...]. Cell 2016
71
15

Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise.
Joshua T Mendell, Neda A Sharifi, Jennifer L Meyers, Francisco Martinez-Murillo, Harry C Dietz. Nat Genet 2004
582
15

Nonsense-mediated mRNA decay effectors are essential for zebrafish embryonic development and survival.
Nadine Wittkopp, Eric Huntzinger, Catrin Weiler, Jérôme Saulière, Steffen Schmidt, Mahendra Sonawane, Elisa Izaurralde. Mol Cell Biol 2009
121
15

EJC core component MLN51 interacts with eIF3 and activates translation.
Pierre-Etienne Chazal, Elisabeth Daguenet, Corinne Wendling, Nathalie Ulryck, Catherine Tomasetto, Bruno Sargueil, Hervé Le Hir. Proc Natl Acad Sci U S A 2013
46
15

Integration of mRNP formation and export.
Petra Björk, Lars Wieslander. Cell Mol Life Sci 2017
36
16

The exon junction complex controls the splicing of MAPK and other long intron-containing transcripts in Drosophila.
Dariel Ashton-Beaucage, Christian M Udell, Hugo Lavoie, Caroline Baril, Martin Lefrançois, Pierre Chagnon, Patrick Gendron, Olivier Caron-Lizotte, Eric Bonneil, Pierre Thibault,[...]. Cell 2010
91
15

Translation is required to remove Y14 from mRNAs in the cytoplasm.
Josée Dostie, Gideon Dreyfuss. Curr Biol 2002
160
15

The exon junction complex is required for definition and excision of neighboring introns in Drosophila.
Rippei Hayashi, Dominik Handler, David Ish-Horowicz, Julius Brennecke. Genes Dev 2014
40
15

An alternative branch of the nonsense-mediated decay pathway.
Wai-Kin Chan, Lulu Huang, Jayanthi P Gudikote, Yao-Fu Chang, J Saadi Imam, James A MacLean, Miles F Wilkinson. EMBO J 2007
151
15

A brave new world of RNA-binding proteins.
Matthias W Hentze, Alfredo Castello, Thomas Schwarzl, Thomas Preiss. Nat Rev Mol Cell Biol 2018
431
15

Insights into the recruitment of the NMD machinery from the crystal structure of a core EJC-UPF3b complex.
Gretel Buchwald, Judith Ebert, Claire Basquin, Jerome Sauliere, Uma Jayachandran, Fulvia Bono, Hervé Le Hir, Elena Conti. Proc Natl Acad Sci U S A 2010
78
15

Quality and quantity control of gene expression by nonsense-mediated mRNA decay.
Tatsuaki Kurosaki, Maximilian W Popp, Lynne E Maquat. Nat Rev Mol Cell Biol 2019
158
15


eIF4AIII enhances translation of nuclear cap-binding complex-bound mRNAs by promoting disruption of secondary structures in 5'UTR.
Junho Choe, Incheol Ryu, Ok Hyun Park, Joori Park, Hana Cho, Jin Seon Yoo, Sung Wook Chi, Min Kyung Kim, Hyun Kyu Song, Yoon Ki Kim. Proc Natl Acad Sci U S A 2014
41
13

Nonsense-mediated mRNA decay occurs during eIF4F-dependent translation in human cells.
Sébastien Durand, Jens Lykke-Andersen. Nat Struct Mol Biol 2013
59
13


SR splicing factors serve as adapter proteins for TAP-dependent mRNA export.
Yingqun Huang, Renata Gattoni, James Stévenin, Joan A Steitz. Mol Cell 2003
333
13


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.