A citation-based method for searching scientific literature

Joshua M Galanter, Christopher R Gignoux, Sam S Oh, Dara Torgerson, Maria Pino-Yanes, Neeta Thakur, Celeste Eng, Donglei Hu, Scott Huntsman, Harold J Farber, Pedro C Avila, Emerita Brigino-Buenaventura, Michael A LeNoir, Kelly Meade, Denise Serebrisky, William Rodríguez-Cintrón, Rajesh Kumar, Jose R Rodríguez-Santana, Max A Seibold, Luisa N Borrell, Esteban G Burchard, Noah Zaitlen. Elife 2017
Times Cited: 85







List of co-cited articles
611 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.
Martin J Aryee, Andrew E Jaffe, Hector Corrada-Bravo, Christine Ladd-Acosta, Andrew P Feinberg, Kasper D Hansen, Rafael A Irizarry. Bioinformatics 2014
22

DNA methylation arrays as surrogate measures of cell mixture distribution.
Eugene Andres Houseman, William P Accomando, Devin C Koestler, Brock C Christensen, Carmen J Marsit, Heather H Nelson, John K Wiencke, Karl T Kelsey. BMC Bioinformatics 2012
22

DNA methylation contributes to natural human variation.
Holger Heyn, Sebastian Moran, Irene Hernando-Herraez, Sergi Sayols, Antonio Gomez, Juan Sandoval, Dave Monk, Kenichiro Hata, Tomas Marques-Bonet, Liewei Wang,[...]. Genome Res 2013
223
20

The epigenomic landscape of African rainforest hunter-gatherers and farmers.
Maud Fagny, Etienne Patin, Julia L MacIsaac, Maxime Rotival, Timothée Flutre, Meaghan J Jones, Katherine J Siddle, Hélène Quach, Christine Harmant, Lisa M McEwen,[...]. Nat Commun 2015
47
29

Population-specificity of human DNA methylation.
Hunter B Fraser, Lucia L Lam, Sarah M Neumann, Michael S Kobor. Genome Biol 2012
174
16

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
16

Genome-wide methylation profiles reveal quantitative views of human aging rates.
Gregory Hannum, Justin Guinney, Ling Zhao, Li Zhang, Guy Hughes, SriniVas Sadda, Brandy Klotzle, Marina Bibikova, Jian-Bing Fan, Yuan Gao,[...]. Mol Cell 2013
15


Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis.
Pan Du, Xiao Zhang, Chiang-Ching Huang, Nadereh Jafari, Warren A Kibbe, Lifang Hou, Simon M Lin. BMC Bioinformatics 2010
14


Factors underlying variable DNA methylation in a human community cohort.
Lucia L Lam, Eldon Emberly, Hunter B Fraser, Sarah M Neumann, Edith Chen, Gregory E Miller, Michael S Kobor. Proc Natl Acad Sci U S A 2012
277
12

Exploring the genetic basis of human population differences in DNA methylation and their causal impact on immune gene regulation.
Lucas T Husquin, Maxime Rotival, Maud Fagny, Hélène Quach, Nora Zidane, Lisa M McEwen, Julia L MacIsaac, Michael S Kobor, Hugues Aschard, Etienne Patin,[...]. Genome Biol 2018
43
23

Accounting for population stratification in DNA methylation studies.
Richard T Barfield, Lynn M Almli, Varun Kilaru, Alicia K Smith, Kristina B Mercer, Richard Duncan, Torsten Klengel, Divya Mehta, Elisabeth B Binder, Michael P Epstein,[...]. Genet Epidemiol 2014
131
11

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines.
Jordana T Bell, Athma A Pai, Joseph K Pickrell, Daniel J Gaffney, Roger Pique-Regi, Jacob F Degner, Yoav Gilad, Jonathan K Pritchard. Genome Biol 2011
595
10

Associations with early-life socio-economic position in adult DNA methylation.
Nada Borghol, Matthew Suderman, Wendy McArdle, Ariane Racine, Michael Hallett, Marcus Pembrey, Clyde Hertzman, Chris Power, Moshe Szyf. Int J Epidemiol 2012
248
10

Integrative analysis of 111 reference human epigenomes.
Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi-Moussavi, Pouya Kheradpour, Zhizhuo Zhang, Jianrong Wang, Michael J Ziller,[...]. Nature 2015
10

A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data.
Andrew E Teschendorff, Francesco Marabita, Matthias Lechner, Thomas Bartlett, Jesper Tegner, David Gomez-Cabrero, Stephan Beck. Bioinformatics 2013
813
10

Recommendations for the design and analysis of epigenome-wide association studies.
Karin B Michels, Alexandra M Binder, Sarah Dedeurwaerder, Charles B Epstein, John M Greally, Ivo Gut, E Andres Houseman, Benedetta Izzi, Karl T Kelsey, Alexander Meissner,[...]. Nat Methods 2013
237
10

DNA methylation age of blood predicts all-cause mortality in later life.
Riccardo E Marioni, Sonia Shah, Allan F McRae, Brian H Chen, Elena Colicino, Sarah E Harris, Jude Gibson, Anjali K Henders, Paul Redmond, Simon R Cox,[...]. Genome Biol 2015
575
9

The sva package for removing batch effects and other unwanted variation in high-throughput experiments.
Jeffrey T Leek, W Evan Johnson, Hilary S Parker, Andrew E Jaffe, John D Storey. Bioinformatics 2012
9

Genetic and environmental influences interact with age and sex in shaping the human methylome.
Jenny van Dongen, Michel G Nivard, Gonneke Willemsen, Jouke-Jan Hottenga, Quinta Helmer, Conor V Dolan, Erik A Ehli, Gareth E Davies, Maarten van Iterson, Charles E Breeze,[...]. Nat Commun 2016
164
9

Differential DNA methylation in purified human blood cells: implications for cell lineage and studies on disease susceptibility.
Lovisa E Reinius, Nathalie Acevedo, Maaike Joerink, Göran Pershagen, Sven-Erik Dahlén, Dario Greco, Cilla Söderhäll, Annika Scheynius, Juha Kere. PLoS One 2012
655
9

Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling.
Ruth Pidsley, Elena Zotenko, Timothy J Peters, Mitchell G Lawrence, Gail P Risbridger, Peter Molloy, Susan Van Djik, Beverly Muhlhausler, Clare Stirzaker, Susan J Clark. Genome Biol 2016
457
9

Racial differences in gene-specific DNA methylation levels are present at birth.
Ronald M Adkins, Julia Krushkal, Frances A Tylavsky, Fridtjof Thomas. Birth Defects Res A Clin Mol Teratol 2011
105
9

Trends in DNA Methylation with Age Replicate Across Diverse Human Populations.
Shyamalika Gopalan, Oana Carja, Maud Fagny, Etienne Patin, Justin W Myrick, Lisa M McEwen, Sarah M Mah, Michael S Kobor, Alain Froment, Marcus W Feldman,[...]. Genetics 2017
37
21

Genome-wide variation of cytosine modifications between European and African populations and the implications for complex traits.
Erika L Moen, Xu Zhang, Wenbo Mu, Shannon M Delaney, Claudia Wing, Jennifer McQuade, Jamie Myers, Lucy A Godley, M Eileen Dolan, Wei Zhang. Genetics 2013
86
8


Life course socioeconomic status and DNA methylation in genes related to stress reactivity and inflammation: The multi-ethnic study of atherosclerosis.
Belinda L Needham, Jennifer A Smith, Wei Zhao, Xu Wang, Bhramar Mukherjee, Sharon L R Kardia, Carol A Shively, Teresa E Seeman, Yongmei Liu, Ava V Diez Roux. Epigenetics 2015
100
8

Genome-wide methylation data mirror ancestry information.
Elior Rahmani, Liat Shenhav, Regev Schweiger, Paul Yousefi, Karen Huen, Brenda Eskenazi, Celeste Eng, Scott Huntsman, Donglei Hu, Joshua Galanter,[...]. Epigenetics Chromatin 2017
43
16

DNA methylation: roles in mammalian development.
Zachary D Smith, Alexander Meissner. Nat Rev Genet 2013
8


Epigenome-wide association studies for common human diseases.
Vardhman K Rakyan, Thomas A Down, David J Balding, Stephan Beck. Nat Rev Genet 2011
775
8

missMethyl: an R package for analyzing data from Illumina's HumanMethylation450 platform.
Belinda Phipson, Jovana Maksimovic, Alicia Oshlack. Bioinformatics 2016
291
8


Accurate ethnicity prediction from placental DNA methylation data.
Victor Yuan, E Magda Price, Giulia Del Gobbo, Sara Mostafavi, Brian Cox, Alexandra M Binder, Karin B Michels, Carmen Marsit, Wendy P Robinson. Epigenetics Chromatin 2019
18
38

PLINK: a tool set for whole-genome association and population-based linkage analyses.
Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel A R Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I W de Bakker, Mark J Daly,[...]. Am J Hum Genet 2007
7

Aging and environmental exposures alter tissue-specific DNA methylation dependent upon CpG island context.
Brock C Christensen, E Andres Houseman, Carmen J Marsit, Shichun Zheng, Margaret R Wrensch, Joseph L Wiemels, Heather H Nelson, Margaret R Karagas, James F Padbury, Raphael Bueno,[...]. PLoS Genet 2009
688
7

An epigenetic clock analysis of race/ethnicity, sex, and coronary heart disease.
Steve Horvath, Michael Gurven, Morgan E Levine, Benjamin C Trumble, Hillard Kaplan, Hooman Allayee, Beate R Ritz, Brian Chen, Ake T Lu, Tammy M Rickabaugh,[...]. Genome Biol 2016
318
7

Epigenome-wide scans identify differentially methylated regions for age and age-related phenotypes in a healthy ageing population.
Jordana T Bell, Pei-Chien Tsai, Tsun-Po Yang, Ruth Pidsley, James Nisbet, Daniel Glass, Massimo Mangino, Guangju Zhai, Feng Zhang, Ana Valdes,[...]. PLoS Genet 2012
446
7

Epigenome-wide association study of body mass index, and the adverse outcomes of adiposity.
Simone Wahl, Alexander Drong, Benjamin Lehne, Marie Loh, William R Scott, Sonja Kunze, Pei-Chien Tsai, Janina S Ried, Weihua Zhang, Youwen Yang,[...]. Nature 2017
437
7

Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels.
Nicholas E Banovich, Xun Lan, Graham McVicker, Bryce van de Geijn, Jacob F Degner, John D Blischak, Julien Roux, Jonathan K Pritchard, Yoav Gilad. PLoS Genet 2014
166
7

Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis.
Yun Liu, Martin J Aryee, Leonid Padyukov, M Daniele Fallin, Espen Hesselberg, Arni Runarsson, Lovisa Reinius, Nathalie Acevedo, Margaret Taub, Marcus Ronninger,[...]. Nat Biotechnol 2013
599
7

High density DNA methylation array with single CpG site resolution.
Marina Bibikova, Bret Barnes, Chan Tsan, Vincent Ho, Brandy Klotzle, Jennie M Le, David Delano, Lu Zhang, Gary P Schroth, Kevin L Gunderson,[...]. Genomics 2011
7

Reference-free cell mixture adjustments in analysis of DNA methylation data.
Eugene Andres Houseman, John Molitor, Carmen J Marsit. Bioinformatics 2014
274
7

De novo identification of differentially methylated regions in the human genome.
Timothy J Peters, Michael J Buckley, Aaron L Statham, Ruth Pidsley, Katherine Samaras, Reginald V Lord, Susan J Clark, Peter L Molloy. Epigenetics Chromatin 2015
412
7

Genomic DNA methylation among women in a multiethnic New York City birth cohort.
Mary Beth Terry, Jennifer S Ferris, Richard Pilsner, Julie D Flom, Parisa Tehranifar, Regina M Santella, Mary V Gamble, Ezra Susser. Cancer Epidemiol Biomarkers Prev 2008
135
7

Worldwide patterns of human epigenetic variation.
Oana Carja, Julia L MacIsaac, Sarah M Mah, Brenna M Henn, Michael S Kobor, Marcus W Feldman, Hunter B Fraser. Nat Ecol Evol 2017
16
37

Adjusting batch effects in microarray expression data using empirical Bayes methods.
W Evan Johnson, Cheng Li, Ariel Rabinovic. Biostatistics 2007
7

Genetic Adaptation and Neandertal Admixture Shaped the Immune System of Human Populations.
Hélène Quach, Maxime Rotival, Julien Pothlichet, Yong-Hwee Eddie Loh, Michael Dannemann, Nora Zidane, Guillaume Laval, Etienne Patin, Christine Harmant, Marie Lopez,[...]. Cell 2016
193
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.