A citation-based method for searching scientific literature

Joshua H Siegle, Aarón Cuevas López, Yogi A Patel, Kirill Abramov, Shay Ohayon, Jakob Voigts. J Neural Eng 2017
Times Cited: 110







List of co-cited articles
688 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Fully integrated silicon probes for high-density recording of neural activity.
James J Jun, Nicholas A Steinmetz, Joshua H Siegle, Daniel J Denman, Marius Bauza, Brian Barbarits, Albert K Lee, Costas A Anastassiou, Alexandru Andrei, Çağatay Aydın,[...]. Nature 2017
429
24

Spike sorting for large, dense electrode arrays.
Cyrille Rossant, Shabnam N Kadir, Dan F M Goodman, John Schulman, Maximilian L D Hunter, Aman B Saleem, Andres Grosmark, Mariano Belluscio, George H Denfield, Alexander S Ecker,[...]. Nat Neurosci 2016
251
21

Bonsai: an event-based framework for processing and controlling data streams.
Gonçalo Lopes, Niccolò Bonacchi, João Frazão, Joana P Neto, Bassam V Atallah, Sofia Soares, Luís Moreira, Sara Matias, Pavel M Itskov, Patrícia A Correia,[...]. Front Neuroinform 2015
100
13

DeepLabCut: markerless pose estimation of user-defined body parts with deep learning.
Alexander Mathis, Pranav Mamidanna, Kevin M Cury, Taiga Abe, Venkatesh N Murthy, Mackenzie Weygandt Mathis, Matthias Bethge. Nat Neurosci 2018
386
13

Spontaneous behaviors drive multidimensional, brainwide activity.
Carsen Stringer, Marius Pachitariu, Nicholas Steinmetz, Charu Bai Reddy, Matteo Carandini, Kenneth D Harris. Science 2019
190
11

The flexDrive: an ultra-light implant for optical control and highly parallel chronic recording of neuronal ensembles in freely moving mice.
Jakob Voigts, Joshua H Siegle, Dominique L Pritchett, Christopher I Moore. Front Syst Neurosci 2013
67
13

Arousal and locomotion make distinct contributions to cortical activity patterns and visual encoding.
Martin Vinck, Renata Batista-Brito, Ulf Knoblich, Jessica A Cardin. Neuron 2015
271
8

The origin of extracellular fields and currents--EEG, ECoG, LFP and spikes.
György Buzsáki, Costas A Anastassiou, Christof Koch. Nat Rev Neurosci 2012
8

A mesoscale connectome of the mouse brain.
Seung Wook Oh, Julie A Harris, Lydia Ng, Brent Winslow, Nicholas Cain, Stefan Mihalas, Quanxin Wang, Chris Lau, Leonard Kuan, Alex M Henry,[...]. Nature 2014
974
8

A Fully Automated Approach to Spike Sorting.
Jason E Chung, Jeremy F Magland, Alex H Barnett, Vanessa M Tolosa, Angela C Tooker, Kye Y Lee, Kedar G Shah, Sarah H Felix, Loren M Frank, Leslie F Greengard. Neuron 2017
100
8

Pupil fluctuations track rapid changes in adrenergic and cholinergic activity in cortex.
Jacob Reimer, Matthew J McGinley, Yang Liu, Charles Rodenkirch, Qi Wang, David A McCormick, Andreas S Tolias. Nat Commun 2016
234
7


Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
7

Quantitative measures of cluster quality for use in extracellular recordings.
N Schmitzer-Torbert, J Jackson, D Henze, K Harris, A D Redish. Neuroscience 2005
384
7

The neocortical circuit: themes and variations.
Kenneth D Harris, Gordon M G Shepherd. Nat Neurosci 2015
378
7

Open source modules for tracking animal behavior and closed-loop stimulation based on Open Ephys and Bonsai.
Alessio Paolo Buccino, Mikkel Elle Lepperød, Svenn-Arne Dragly, Philipp Häfliger, Marianne Fyhn, Torkel Hafting. J Neural Eng 2018
10
70

NeuroGrid: recording action potentials from the surface of the brain.
Dion Khodagholy, Jennifer N Gelinas, Thomas Thesen, Werner Doyle, Orrin Devinsky, George G Malliaras, György Buzsáki. Nat Neurosci 2015
272
7


Quality metrics to accompany spike sorting of extracellular signals.
Daniel N Hill, Samar B Mehta, David Kleinfeld. J Neurosci 2011
188
7

Single-trial neural dynamics are dominated by richly varied movements.
Simon Musall, Matthew T Kaufman, Ashley L Juavinett, Steven Gluf, Anne K Churchland. Nat Neurosci 2019
118
7

Falcon: a highly flexible open-source software for closed-loop neuroscience.
Davide Ciliberti, Fabian Kloosterman. J Neural Eng 2017
18
33

Miniaturized integration of a fluorescence microscope.
Kunal K Ghosh, Laurie D Burns, Eric D Cocker, Axel Nimmerjahn, Yaniv Ziv, Abbas El Gamal, Mark J Schnitzer. Nat Methods 2011
428
6

A shared neural ensemble links distinct contextual memories encoded close in time.
Denise J Cai, Daniel Aharoni, Tristan Shuman, Justin Shobe, Jeremy Biane, Weilin Song, Brandon Wei, Michael Veshkini, Mimi La-Vu, Jerry Lou,[...]. Nature 2016
301
6

Characterization of neocortical principal cells and interneurons by network interactions and extracellular features.
Peter Barthó, Hajime Hirase, Lenaïc Monconduit, Michael Zugaro, Kenneth D Harris, György Buzsáki. J Neurophysiol 2004
444
6

PINP: a new method of tagging neuronal populations for identification during in vivo electrophysiological recording.
Susana Q Lima, Tomás Hromádka, Petr Znamenskiy, Anthony M Zador. PLoS One 2009
200
6

Close-Packed Silicon Microelectrodes for Scalable Spatially Oversampled Neural Recording.
Jorg Scholvin, Justin P Kinney, Jacob G Bernstein, Caroline Moore-Kochlacs, Nancy Kopell, Clifton G Fonstad, Edward S Boyden. IEEE Trans Biomed Eng 2016
83
7

A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing.
Linda Madisen, Tianyi Mao, Henner Koch, Jia-min Zhuo, Antal Berenyi, Shigeyoshi Fujisawa, Yun-Wei A Hsu, Alfredo J Garcia, Xuan Gu, Sebastien Zanella,[...]. Nat Neurosci 2012
672
6

Thalamic nuclei convey diverse contextual information to layer 1 of visual cortex.
Morgane M Roth, Johannes C Dahmen, Dylan R Muir, Fabia Imhof, Francisco J Martini, Sonja B Hofer. Nat Neurosci 2016
152
6

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
6

Learning Enhances Sensory and Multiple Non-sensory Representations in Primary Visual Cortex.
Jasper Poort, Adil G Khan, Marius Pachitariu, Abdellatif Nemri, Ivana Orsolic, Julija Krupic, Marius Bauza, Maneesh Sahani, Georg B Keller, Thomas D Mrsic-Flogel,[...]. Neuron 2015
139
5

Brain activity mapping at multiple scales with silicon microprobes containing 1,024 electrodes.
Justin L Shobe, Leslie D Claar, Sepideh Parhami, Konstantin I Bakhurin, Sotiris C Masmanidis. J Neurophysiol 2015
62
8

Large-scale recording of neuronal ensembles.
György Buzsáki. Nat Neurosci 2004
836
5

A Commitment to Open Source in Neuroscience.
Padraig Gleeson, Andrew P Davison, R Angus Silver, Giorgio A Ascoli. Neuron 2017
22
22

An open source, wireless capable miniature microscope system.
William A Liberti, L Nathan Perkins, Daniel P Leman, Timothy J Gardner. J Neural Eng 2017
38
13

Waking State: Rapid Variations Modulate Neural and Behavioral Responses.
Matthew J McGinley, Martin Vinck, Jacob Reimer, Renata Batista-Brito, Edward Zagha, Cathryn R Cadwell, Andreas S Tolias, Jessica A Cardin, David A McCormick. Neuron 2015
268
5

How inhibition shapes cortical activity.
Jeffry S Isaacson, Massimo Scanziani. Neuron 2011
803
5


An extended retinotopic map of mouse cortex.
Jun Zhuang, Lydia Ng, Derric Williams, Matthew Valley, Yang Li, Marina Garrett, Jack Waters. Elife 2017
78
6

A synaptic and circuit basis for corollary discharge in the auditory cortex.
David M Schneider, Anders Nelson, Richard Mooney. Nature 2014
251
5

Mapping Sub-Second Structure in Mouse Behavior.
Alexander B Wiltschko, Matthew J Johnson, Giuliano Iurilli, Ralph E Peterson, Jesse M Katon, Stan L Pashkovski, Victoria E Abraira, Ryan P Adams, Sandeep Robert Datta. Neuron 2015
180
5

All the light that we can see: a new era in miniaturized microscopy.
Daniel Aharoni, Baljit S Khakh, Alcino J Silva, Peyman Golshani. Nat Methods 2019
33
15

Fast animal pose estimation using deep neural networks.
Talmo D Pereira, Diego E Aldarondo, Lindsay Willmore, Mikhail Kislin, Samuel S-H Wang, Mala Murthy, Joshua W Shaevitz. Nat Methods 2019
93
5

Neuroscience Needs Behavior: Correcting a Reductionist Bias.
John W Krakauer, Asif A Ghazanfar, Alex Gomez-Marin, Malcolm A MacIver, David Poeppel. Neuron 2017
331
5

FieldTrip: Open source software for advanced analysis of MEG, EEG, and invasive electrophysiological data.
Robert Oostenveld, Pascal Fries, Eric Maris, Jan-Mathijs Schoffelen. Comput Intell Neurosci 2011
5

SiNAPS: An implantable active pixel sensor CMOS-probe for simultaneous large-scale neural recordings.
Gian Nicola Angotzi, Fabio Boi, Aziliz Lecomte, Ermanno Miele, Mario Malerba, Stefano Zucca, Antonino Casile, Luca Berdondini. Biosens Bioelectron 2019
21
23

Large-scale, high-density (up to 512 channels) recording of local circuits in behaving animals.
Antal Berényi, Zoltán Somogyvári, Anett J Nagy, Lisa Roux, John D Long, Shigeyoshi Fujisawa, Eran Stark, Anthony Leonardo, Timothy D Harris, György Buzsáki. J Neurophysiol 2014
155
5

Tools for probing local circuits: high-density silicon probes combined with optogenetics.
György Buzsáki, Eran Stark, Antal Berényi, Dion Khodagholy, Daryl R Kipke, Euisik Yoon, Kensall D Wise. Neuron 2015
118
5

Chronically implanted Neuropixels probes enable high-yield recordings in freely moving mice.
Ashley L Juavinett, George Bekheet, Anne K Churchland. Elife 2019
29
17

Creating low-impedance tetrodes by electroplating with additives.
John E Ferguson, Chris Boldt, A David Redish. Sens Actuators A Phys 2009
60
8

SciPy 1.0: fundamental algorithms for scientific computing in Python.
Pauli Virtanen, Ralf Gommers, Travis E Oliphant, Matt Haberland, Tyler Reddy, David Cournapeau, Evgeni Burovski, Pearu Peterson, Warren Weckesser, Jonathan Bright,[...]. Nat Methods 2020
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.