A citation-based method for searching scientific literature

Dennis Kappei, Marion Scheibe, Maciej Paszkowski-Rogacz, Alina Bluhm, Toni Ingolf Gossmann, Sabrina Dietz, Mario Dejung, Holger Herlyn, Frank Buchholz, Matthias Mann, Falk Butter. Nat Commun 2017
Times Cited: 11







List of co-cited articles
36 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



TZAP: A telomere-associated protein involved in telomere length control.
Julia Su Zhou Li, Javier Miralles Fusté, Tatevik Simavorian, Cristina Bartocci, Jill Tsai, Jan Karlseder, Eros Lazzerini Denchi. Science 2017
68
36

ZBTB48 is both a vertebrate telomere-binding protein and a transcriptional activator.
Arne Jahn, Grishma Rane, Maciej Paszkowski-Rogacz, Sergi Sayols, Alina Bluhm, Chung-Ting Han, Irena Draškovič, José Arturo Londoño-Vallejo, Alan Prem Kumar, Frank Buchholz,[...]. EMBO Rep 2017
22
36

Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ.
Jürgen Cox, Marco Y Hein, Christian A Luber, Igor Paron, Nagarjuna Nagaraj, Matthias Mann. Mol Cell Proteomics 2014
27

Purification of proteins associated with specific genomic Loci.
Jérôme Déjardin, Robert E Kingston. Cell 2009
342
27

How shelterin protects mammalian telomeres.
Wilhelm Palm, Titia de Lange. Annu Rev Genet 2008
27

In-gel digestion for mass spectrometric characterization of proteins and proteomes.
Andrej Shevchenko, Henrik Tomas, Jan Havlis, Jesper V Olsen, Matthias Mann. Nat Protoc 2006
27

Specific association of human telomerase activity with immortal cells and cancer.
N W Kim, M A Piatyszek, K R Prowse, C B Harley, M D West, P L Ho, G M Coviello, W E Wright, S L Weinrich, J W Shay. Science 1994
27

Telomerase-negative immortalized human cells contain a novel type of promyelocytic leukemia (PML) body.
T R Yeager, A A Neumann, A Englezou, L I Huschtscha, J R Noble, R R Reddel. Cancer Res 1999
492
18

HOT1 is a mammalian direct telomere repeat-binding protein contributing to telomerase recruitment.
Dennis Kappei, Falk Butter, Christian Benda, Marion Scheibe, Irena Draškovič, Michelle Stevense, Clara Lopes Novo, Claire Basquin, Masatake Araki, Kimi Araki,[...]. EMBO J 2013
47
18

NuRD-ZNF827 recruitment to telomeres creates a molecular scaffold for homologous recombination.
Dimitri Conomos, Roger R Reddel, Hilda A Pickett. Nat Struct Mol Biol 2014
62
18

2016 update of the PRIDE database and its related tools.
Juan Antonio Vizcaíno, Attila Csordas, Noemi del-Toro, José A Dianes, Johannes Griss, Ilias Lavidas, Gerhard Mayer, Yasset Perez-Riverol, Florian Reisinger, Tobias Ternent,[...]. Nucleic Acids Res 2016
18

Variant repeats are interspersed throughout the telomeres and recruit nuclear receptors in ALT cells.
Dimitri Conomos, Michael D Stutz, Mark Hills, Axel A Neumann, Tracy M Bryan, Roger R Reddel, Hilda A Pickett. J Cell Biol 2012
79
18

Telomeric repeats (TTAGGC)n are sufficient for chromosome capping function in Caenorhabditis elegans.
C Wicky, A M Villeneuve, N Lauper, L Codourey, H Tobler, F Müller. Proc Natl Acad Sci U S A 1996
72
18

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
18


Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
18

Nuclear-receptor-mediated telomere insertion leads to genome instability in ALT cancers.
Paulina Marzec, Claudia Armenise, Gaëlle Pérot, Fani-Marlen Roumelioti, Eugenia Basyuk, Sarantis Gagos, Frédéric Chibon, Jérôme Déjardin. Cell 2015
56
18

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
Ben Langmead, Cole Trapnell, Mihai Pop, Steven L Salzberg. Genome Biol 2009
18

C. elegans telomeres contain G-strand and C-strand overhangs that are bound by distinct proteins.
Marcela Raices, Ramiro E Verdun, Sarah A Compton, Candy I Haggblom, Jack D Griffith, Andrew Dillin, Jan Karlseder. Cell 2008
83
18

Normal human chromosomes have long G-rich telomeric overhangs at one end.
W E Wright, V M Tesmer, K E Huffman, S D Levene, J W Shay. Genes Dev 1997
521
18

Identification of TTAGGG-binding proteins in Neurospora crassa, a fungus with vertebrate-like telomere repeats.
Núria Casas-Vila, Marion Scheibe, Anja Freiwald, Dennis Kappei, Falk Butter. BMC Genomics 2015
8
25




deepTools2: a next generation web server for deep-sequencing data analysis.
Fidel Ramírez, Devon P Ryan, Björn Grüning, Vivek Bhardwaj, Fabian Kilpert, Andreas S Richter, Steffen Heyne, Friederike Dündar, Thomas Manke. Nucleic Acids Res 2016
18

Break-induced telomere synthesis underlies alternative telomere maintenance.
Robert L Dilley, Priyanka Verma, Nam Woo Cho, Harrison D Winters, Anne R Wondisford, Roger A Greenberg. Nature 2016
194
18

TRF2 protects human telomeres from end-to-end fusions.
B van Steensel, A Smogorzewska, T de Lange. Cell 1998
18

Mammalian telomeres end in a large duplex loop.
J D Griffith, L Comeau, S Rosenfield, R M Stansel, A Bianchi, H Moss, T de Lange. Cell 1999
18

Super-resolution fluorescence imaging of telomeres reveals TRF2-dependent T-loop formation.
Ylli Doksani, John Y Wu, Titia de Lange, Xiaowei Zhuang. Cell 2013
260
18






Telomeres shorten during ageing of human fibroblasts.
C B Harley, A B Futcher, C W Greider. Nature 1990
18

Molecular analysis of the region of distal 1p commonly deleted in neuroblastoma.
P S White, J M Maris, E P Sulman, S J Jensen, S M Kyemba, C P Beltinger, C Allen, D L Kramer, J A Biegel, G M Brodeur. Eur J Cancer 1997
32
9


A mutant telomerase defective in nuclear-cytoplasmic shuttling fails to immortalize cells and is associated with mitochondrial dysfunction.
Olga A Kovalenko, Matthieu J Caron, Perihan Ulema, Carolina Medrano, Andrew P Thomas, Masayuki Kimura, Marcelo G Bonini, Utz Herbig, Janine H Santos. Aging Cell 2010
60
9

Proteomic Profiling Reveals a Specific Role for Translesion DNA Polymerase η in the Alternative Lengthening of Telomeres.
Laura Garcia-Exposito, Elodie Bournique, Valérie Bergoglio, Arindam Bose, Jonathan Barroso-Gonzalez, Sufang Zhang, Justin L Roncaioli, Marietta Lee, Callen T Wallace, Simon C Watkins,[...]. Cell Rep 2016
62
9

Identification and characterization of the novel protein CCDC106 that interacts with p53 and promotes its degradation.
Jianlin Zhou, Xi Qiao, Ling Xiao, Wei Sun, Lin Wang, Hong Li, Yuan Wu, Xiaofeng Ding, Xiang Hu, Chang Zhou,[...]. FEBS Lett 2010
14
9

Human Krüppel-related 3 (HKR3): a candidate for the 1p36 neuroblastoma tumour suppressor gene?
J M Maris, J Jensen, E P Sulman, C P Beltinger, C Allen, J A Biegel, G M Brodeur, P S White. Eur J Cancer 1997
23
9

MEME SUITE: tools for motif discovery and searching.
Timothy L Bailey, Mikael Boden, Fabian A Buske, Martin Frith, Charles E Grant, Luca Clementi, Jingyuan Ren, Wilfred W Li, William S Noble. Nucleic Acids Res 2009
9

Searching for SNPs with cloud computing.
Ben Langmead, Michael C Schatz, Jimmy Lin, Mihai Pop, Steven L Salzberg. Genome Biol 2009
9

Mitochondrial localization of telomeric protein TIN2 links telomere regulation to metabolic control.
Liuh-Yow Chen, Yi Zhang, Qinfen Zhang, Hongzhi Li, Zhenhua Luo, Hezhi Fang, Sok Ho Kim, Li Qin, Patricia Yotnda, Jianming Xu,[...]. Mol Cell 2012
62
9

RAP1 protects from obesity through its extratelomeric role regulating gene expression.
Paula Martínez, Gonzalo Gómez-López, Fernando García, Evi Mercken, Sarah Mitchell, Juana M Flores, Rafael de Cabo, Maria A Blasco. Cell Rep 2013
71
9

Mitochondrial and nuclear DNA matching shapes metabolism and healthy ageing.
Ana Latorre-Pellicer, Raquel Moreno-Loshuertos, Ana Victoria Lechuga-Vieco, Fátima Sánchez-Cabo, Carlos Torroja, Rebeca Acín-Pérez, Enrique Calvo, Esther Aix, Andrés González-Guerra, Angela Logan,[...]. Nature 2016
198
9

CTC1 deletion results in defective telomere replication, leading to catastrophic telomere loss and stem cell exhaustion.
Peili Gu, Jin-Na Min, Yang Wang, Chenhui Huang, Tao Peng, Weihang Chai, Sandy Chang. EMBO J 2012
104
9

Telomere dysfunction induces metabolic and mitochondrial compromise.
Ergün Sahin, Simona Colla, Marc Liesa, Javid Moslehi, Florian L Müller, Mira Guo, Marcus Cooper, Darrell Kotton, Attila J Fabian, Carl Walkey,[...]. Nature 2011
782
9

A quantitative telomeric chromatin isolation protocol identifies different telomeric states.
Larissa Grolimund, Eric Aeby, Romain Hamelin, Florence Armand, Diego Chiappe, Marc Moniatte, Joachim Lingner. Nat Commun 2013
66
9


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.