A citation-based method for searching scientific literature

S P Methot, J M Di Noia. Adv Immunol 2017
Times Cited: 128







List of co-cited articles
1193 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Convergent transcription at intragenic super-enhancers targets AID-initiated genomic instability.
Fei-Long Meng, Zhou Du, Alexander Federation, Jiazhi Hu, Qiao Wang, Kyong-Rim Kieffer-Kwon, Robin M Meyers, Corina Amor, Caitlyn R Wasserman, Donna Neuberg,[...]. Cell 2014
163
23

Activation-induced cytidine deaminase (AID) deficiency causes the autosomal recessive form of the Hyper-IgM syndrome (HIGM2).
P Revy, T Muto, Y Levy, F Geissmann, A Plebani, O Sanal, N Catalan, M Forveille, R Dufourcq-Labelouse, A Gennery,[...]. Cell 2000
21

Two levels of protection for the B cell genome during somatic hypermutation.
Man Liu, Jamie L Duke, Daniel J Richter, Carola G Vinuesa, Christopher C Goodnow, Steven H Kleinstein, David G Schatz. Nature 2008
431
20

B cell super-enhancers and regulatory clusters recruit AID tumorigenic activity.
Jason Qian, Qiao Wang, Marei Dose, Nathanael Pruett, Kyong-Rim Kieffer-Kwon, Wolfgang Resch, Genqing Liang, Zhonghui Tang, Ewy Mathé, Christopher Benner,[...]. Cell 2014
177
19

Mechanisms of programmed DNA lesions and genomic instability in the immune system.
Frederick W Alt, Yu Zhang, Fei-Long Meng, Chunguang Guo, Bjoern Schwer. Cell 2013
300
18


Mutations, kataegis and translocations in B cells: understanding AID promiscuous activity.
Rafael Casellas, Uttiya Basu, William T Yewdell, Jayanta Chaudhuri, Davide F Robbiani, Javier M Di Noia. Nat Rev Immunol 2016
105
18

Processive AID-catalysed cytosine deamination on single-stranded DNA simulates somatic hypermutation.
Phuong Pham, Ronda Bransteitter, John Petruska, Myron F Goodman. Nature 2003
500
18

Activation-induced cytidine deaminase deaminates deoxycytidine on single-stranded DNA but requires the action of RNase.
Ronda Bransteitter, Phuong Pham, Matthew D Scharff, Myron F Goodman. Proc Natl Acad Sci U S A 2003
534
17

Molecular mechanisms of antibody somatic hypermutation.
Javier M Di Noia, Michael S Neuberger. Annu Rev Biochem 2007
711
16

Mechanism and regulation of class switch recombination.
Janet Stavnezer, Jeroen E J Guikema, Carol E Schrader. Annu Rev Immunol 2008
667
15

AID Recognizes Structured DNA for Class Switch Recombination.
Qi Qiao, Li Wang, Fei-Long Meng, Joyce K Hwang, Frederick W Alt, Hao Wu. Mol Cell 2017
87
17

Immunoglobulin isotype switching is inhibited and somatic hypermutation perturbed in UNG-deficient mice.
Cristina Rada, Gareth T Williams, Hilde Nilsen, Deborah E Barnes, Tomas Lindahl, Michael S Neuberger. Curr Biol 2002
554
15

Fundamental roles of chromatin loop extrusion in antibody class switching.
Xuefei Zhang, Yu Zhang, Zhaoqing Ba, Nia Kyritsis, Rafael Casellas, Frederick W Alt. Nature 2019
60
25

AID in Antibody Diversification: There and Back Again.
Yuqing Feng, Noé Seija, Javier M Di Noia, Alberto Martin. Trends Immunol 2020
48
31

Transcription-targeted DNA deamination by the AID antibody diversification enzyme.
Jayanta Chaudhuri, Ming Tian, Chan Khuong, Katrin Chua, Eric Pinaud, Frederick W Alt. Nature 2003
580
14

Specific expression of activation-induced cytidine deaminase (AID), a novel member of the RNA-editing deaminase family in germinal center B cells.
M Muramatsu, V S Sankaranand, S Anant, M Sugai, K Kinoshita, N O Davidson, T Honjo. J Biol Chem 1999
869
13

A broad atlas of somatic hypermutation allows prediction of activation-induced deaminase targets.
Ángel F Álvarez-Prado, Pablo Pérez-Durán, Arantxa Pérez-García, Alberto Benguria, Carlos Torroja, Virginia G de Yébenes, Almudena R Ramiro. J Exp Med 2018
51
25


Shieldin complex promotes DNA end-joining and counters homologous recombination in BRCA1-null cells.
Harveer Dev, Ting-Wei Will Chiang, Chloe Lescale, Inge de Krijger, Alistair G Martin, Domenic Pilger, Julia Coates, Matylda Sczaniecka-Clift, Wenming Wei, Matthias Ostermaier,[...]. Nat Cell Biol 2018
184
13

Activation-induced cytidine deaminase targets DNA at sites of RNA polymerase II stalling by interaction with Spt5.
Rushad Pavri, Anna Gazumyan, Mila Jankovic, Michela Di Virgilio, Isaac Klein, Camilo Ansarah-Sobrinho, Wolfgang Resch, Arito Yamane, Bernardo Reina San-Martin, Vasco Barreto,[...]. Cell 2010
260
13

53BP1 cooperation with the REV7-shieldin complex underpins DNA structure-specific NHEJ.
Hind Ghezraoui, Catarina Oliveira, Jordan R Becker, Kirstin Bilham, Daniela Moralli, Consuelo Anzilotti, Roman Fischer, Mukta Deobagkar-Lele, Maria Sanchiz-Calvo, Elena Fueyo-Marcos,[...]. Nature 2018
150
12

The shieldin complex mediates 53BP1-dependent DNA repair.
Sylvie M Noordermeer, Salomé Adam, Dheva Setiaputra, Marco Barazas, Stephen J Pettitt, Alexanda K Ling, Michele Olivieri, Alejandro Álvarez-Quilón, Nathalie Moatti, Michal Zimmermann,[...]. Nature 2018
276
12

Noncoding RNA transcription targets AID to divergently transcribed loci in B cells.
Evangelos Pefanis, Jiguang Wang, Gerson Rothschild, Junghyun Lim, Jaime Chao, Raul Rabadan, Aris N Economides, Uttiya Basu. Nature 2014
118
12

Sequence-Intrinsic Mechanisms that Target AID Mutational Outcomes on Antibody Genes.
Leng-Siew Yeap, Joyce K Hwang, Zhou Du, Robin M Meyers, Fei-Long Meng, Agnė Jakubauskaitė, Mengyuan Liu, Vinidhra Mani, Donna Neuberg, Thomas B Kepler,[...]. Cell 2015
104
12

Non-coding RNA Generated following Lariat Debranching Mediates Targeting of AID to DNA.
Simin Zheng, Bao Q Vuong, Bharat Vaidyanathan, Jia-Yu Lin, Feng-Ting Huang, Jayanta Chaudhuri. Cell 2015
112
12

R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells.
Kefei Yu, Frederic Chedin, Chih-Lin Hsieh, Thomas E Wilson, Michael R Lieber. Nat Immunol 2003
525
12


DNA double-strand break response factors influence end-joining features of IgH class switch and general translocation junctions.
Rohit A Panchakshari, Xuefei Zhang, Vipul Kumar, Zhou Du, Pei-Chi Wei, Jennifer Kao, Junchao Dong, Frederick W Alt. Proc Natl Acad Sci U S A 2018
41
26

Signatures of mutational processes in human cancer.
Ludmil B Alexandrov, Serena Nik-Zainal, David C Wedge, Samuel A J R Aparicio, Sam Behjati, Andrew V Biankin, Graham R Bignell, Niccolò Bolli, Ake Borg, Anne-Lise Børresen-Dale,[...]. Nature 2013
11

Deep-sequencing identification of the genomic targets of the cytidine deaminase AID and its cofactor RPA in B lymphocytes.
Arito Yamane, Wolfgang Resch, Nan Kuo, Stefan Kuchen, Zhiyu Li, Hong-wei Sun, Davide F Robbiani, Kevin McBride, Michel C Nussenzweig, Rafael Casellas. Nat Immunol 2011
207
11

AID mutates E. coli suggesting a DNA deamination mechanism for antibody diversification.
Svend K Petersen-Mahrt, Reuben S Harris, Michael S Neuberger. Nature 2002
693
11

IgH class switching and translocations use a robust non-classical end-joining pathway.
Catherine T Yan, Cristian Boboila, Ellen Kris Souza, Sonia Franco, Thomas R Hickernell, Michael Murphy, Sunil Gumaste, Mark Geyer, Ali A Zarrin, John P Manis,[...]. Nature 2007
440
11

V(D)J recombination: mechanisms of initiation.
David G Schatz, Patrick C Swanson. Annu Rev Genet 2011
313
11




High frequency class switching of an IgM+ B lymphoma clone CH12F3 to IgA+ cells.
M Nakamura, S Kondo, M Sugai, M Nazarea, S Imamura, T Honjo. Int Immunol 1996
159
10

53BP1 links DNA damage-response pathways to immunoglobulin heavy chain class-switch recombination.
John P Manis, Julio C Morales, Zhenfang Xia, Jeffery L Kutok, Frederick W Alt, Phillip B Carpenter. Nat Immunol 2004
260
10

The RNA exosome targets the AID cytidine deaminase to both strands of transcribed duplex DNA substrates.
Uttiya Basu, Fei-Long Meng, Celia Keim, Veronika Grinstein, Evangelos Pefanis, Jennifer Eccleston, Tingting Zhang, Darienne Myers, Caitlyn R Wasserman, Duane R Wesemann,[...]. Cell 2011
217
10

AID mediates hypermutation by deaminating single stranded DNA.
Sarah K Dickerson, Eleonora Market, Eva Besmer, F Nina Papavasiliou. J Exp Med 2003
356
10

The biochemistry of somatic hypermutation.
Jonathan U Peled, Fei Li Kuang, Maria D Iglesias-Ussel, Sergio Roa, Susan L Kalis, Myron F Goodman, Matthew D Scharff. Annu Rev Immunol 2008
322
10

DNA Repair Network Analysis Reveals Shieldin as a Key Regulator of NHEJ and PARP Inhibitor Sensitivity.
Rajat Gupta, Kumar Somyajit, Takeo Narita, Elina Maskey, Andre Stanlie, Magdalena Kremer, Dimitris Typas, Michael Lammers, Niels Mailand, Andre Nussenzweig,[...]. Cell 2018
212
10

RIF1 is essential for 53BP1-dependent nonhomologous end joining and suppression of DNA double-strand break resection.
J Ross Chapman, Patricia Barral, Jean-Baptiste Vannier, Valérie Borel, Martin Steger, Antonia Tomas-Loba, Alessandro A Sartori, Ian R Adams, Facundo D Batista, Simon J Boulton. Mol Cell 2013
418
10

Orientation-specific joining of AID-initiated DNA breaks promotes antibody class switching.
Junchao Dong, Rohit A Panchakshari, Tingting Zhang, Yu Zhang, Jiazhi Hu, Sabrina A Volpi, Robin M Meyers, Yu-Jui Ho, Zhou Du, Davide F Robbiani,[...]. Nature 2015
74
13

Genome-wide translocation sequencing reveals mechanisms of chromosome breaks and rearrangements in B cells.
Roberto Chiarle, Yu Zhang, Richard L Frock, Susanna M Lewis, Benoit Molinie, Yu-Jui Ho, Darienne R Myers, Vivian W Choi, Mara Compagno, Daniel J Malkin,[...]. Cell 2011
316
10

Chromosome translocation, B cell lymphoma, and activation-induced cytidine deaminase.
Davide F Robbiani, Michel C Nussenzweig. Annu Rev Pathol 2013
121
10


Rif1 prevents resection of DNA breaks and promotes immunoglobulin class switching.
Michela Di Virgilio, Elsa Callen, Arito Yamane, Wenzhu Zhang, Mila Jankovic, Alexander D Gitlin, Niklas Feldhahn, Wolfgang Resch, Thiago Y Oliveira, Brian T Chait,[...]. Science 2013
290
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.