A citation-based method for searching scientific literature

L F Liu, J C Wang. Proc Natl Acad Sci U S A 1987
Times Cited: 1550







List of co-cited articles
1341 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Transcription under torsion.
Jie Ma, Lu Bai, Michelle D Wang. Science 2013
190
26

Transcription-dependent dynamic supercoiling is a short-range genomic force.
Fedor Kouzine, Ashutosh Gupta, Laura Baranello, Damian Wojtowicz, Khadija Ben-Aissa, Juhong Liu, Teresa M Przytycka, David Levens. Nat Struct Mol Biol 2013
208
24

Transcription-generated torsional stress destabilizes nucleosomes.
Sheila S Teves, Steven Henikoff. Nat Struct Mol Biol 2014
131
21

Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures.
Catherine Naughton, Nicolaos Avlonitis, Samuel Corless, James G Prendergast, Ioulia K Mati, Paul P Eijk, Scott L Cockroft, Mark Bradley, Bauke Ylstra, Nick Gilbert. Nat Struct Mol Biol 2013
237
21

Long-Distance Cooperative and Antagonistic RNA Polymerase Dynamics via DNA Supercoiling.
Sangjin Kim, Bruno Beltran, Irnov Irnov, Christine Jacobs-Wagner. Cell 2019
39
48

Roles of eukaryotic topoisomerases in transcription, replication and genomic stability.
Yves Pommier, Yilun Sun, Shar-Yin N Huang, John L Nitiss. Nat Rev Mol Cell Biol 2016
478
18

Mechanism of transcriptional bursting in bacteria.
Shasha Chong, Chongyi Chen, Hao Ge, X Sunney Xie. Cell 2014
216
16




Topoisomerases facilitate transcription of long genes linked to autism.
Ian F King, Chandri N Yandava, Angela M Mabb, Jack S Hsiao, Hsien-Sung Huang, Brandon L Pearson, J Mauro Calabrese, Joshua Starmer, Joel S Parker, Terry Magnuson,[...]. Nature 2013
261
14

DNA supercoiling during transcription.
Jie Ma, Michelle D Wang. Biophys Rev 2016
56
23

RNA Polymerase II Regulates Topoisomerase 1 Activity to Favor Efficient Transcription.
Laura Baranello, Damian Wojtowicz, Kairong Cui, Ballachanda N Devaiah, Hye-Jung Chung, Ka Yim Chan-Salis, Rajarshi Guha, Kelli Wilson, Xiaohu Zhang, Hongliang Zhang,[...]. Cell 2016
149
13

The functional response of upstream DNA to dynamic supercoiling in vivo.
Fedor Kouzine, Suzanne Sanford, Zichrini Elisha-Feil, David Levens. Nat Struct Mol Biol 2008
216
13

Roles of topoisomerases in maintaining steady-state DNA supercoiling in Escherichia coli.
E L Zechiedrich, A B Khodursky, S Bachellier, R Schneider, D Chen, D M Lilley, N R Cozzarelli. J Biol Chem 2000
239
12

All tangled up: how cells direct, manage and exploit topoisomerase function.
Seychelle M Vos, Elsa M Tretter, Bryan H Schmidt, James M Berger. Nat Rev Mol Cell Biol 2011
405
12

Single-nucleotide-resolution mapping of DNA gyrase cleavage sites across the Escherichia coli genome.
Dmitry Sutormin, Natalia Rubanova, Maria Logacheva, Dmitry Ghilarov, Konstantin Severinov. Nucleic Acids Res 2019
26
46

Bacterial nucleoid-associated proteins, nucleoid structure and gene expression.
Shane C Dillon, Charles J Dorman. Nat Rev Microbiol 2010
577
12

Genome scale patterns of supercoiling in a bacterial chromosome.
Avantika Lal, Amlanjyoti Dhar, Andrei Trostel, Fedor Kouzine, Aswin S N Seshasayee, Sankar Adhya. Nat Commun 2016
74
16


DNA gyrase: an enzyme that introduces superhelical turns into DNA.
M Gellert, K Mizuuchi, M H O'Dea, H A Nash. Proc Natl Acad Sci U S A 1976
11

Activity-Induced DNA Breaks Govern the Expression of Neuronal Early-Response Genes.
Ram Madabhushi, Fan Gao, Andreas R Pfenning, Ling Pan, Satoko Yamakawa, Jinsoo Seo, Richard Rueda, Trongha X Phan, Hidekuni Yamakawa, Ping-Chieh Pao,[...]. Cell 2015
399
10


Torque and dynamics of linking number relaxation in stretched supercoiled DNA.
John F Marko. Phys Rev E Stat Nonlin Soft Matter Phys 2007
119
10

A topoisomerase IIbeta-mediated dsDNA break required for regulated transcription.
Bong-Gun Ju, Victoria V Lunyak, Valentina Perissi, Ivan Garcia-Bassets, David W Rose, Christopher K Glass, Michael G Rosenfeld. Science 2006
645
10

Androgen-induced TOP2B-mediated double-strand breaks and prostate cancer gene rearrangements.
Michael C Haffner, Martin J Aryee, Antoun Toubaji, David M Esopi, Roula Albadine, Bora Gurel, William B Isaacs, G Steven Bova, Wennuan Liu, Jianfeng Xu,[...]. Nat Genet 2010
440
10

Bacterial genome architecture shapes global transcriptional regulation by DNA supercoiling.
Bilal El Houdaigui, Raphaël Forquet, Thomas Hindré, Dominique Schneider, William Nasser, Sylvie Reverchon, Sam Meyer. Nucleic Acids Res 2019
31
32

DNA Topoisomerases.
Natassja G Bush, Katherine Evans-Roberts, Anthony Maxwell. EcoSal Plus 2015
115
9

Transcription facilitated genome-wide recruitment of topoisomerase I and DNA gyrase.
Wareed Ahmed, Claudia Sala, Shubhada R Hegde, Rajiv Kumar Jha, Stewart T Cole, Valakunja Nagaraja. PLoS Genet 2017
35
25

Rates of gyrase supercoiling and transcription elongation control supercoil density in a bacterial chromosome.
Nikolay Rovinskiy, Andrews Akwasi Agbleke, Olga Chesnokova, Zhenhua Pang, N Patrick Higgins. PLoS Genet 2012
76
11

Topological domain structure of the Escherichia coli chromosome.
Lisa Postow, Christine D Hardy, Javier Arsuaga, Nicholas R Cozzarelli. Genes Dev 2004
321
9

Genome Organization Drives Chromosome Fragility.
Andres Canela, Yaakov Maman, Seolkyoung Jung, Nancy Wong, Elsa Callen, Amanda Day, Kyong-Rim Kieffer-Kwon, Aleksandra Pekowska, Hongliang Zhang, Suhas S P Rao,[...]. Cell 2017
209
9

High-resolution, genome-wide mapping of positive supercoiling in chromosomes.
Monica S Guo, Ryo Kawamura, Megan L Littlehale, John F Marko, Michael T Laub. Elife 2021
14
64


Direct interaction between Escherichia coli RNA polymerase and the zinc ribbon domains of DNA topoisomerase I.
Bokun Cheng, Chang-Xi Zhu, Chengling Ji, Adriana Ahumada, Yuk-Ching Tse-Dinh. J Biol Chem 2003
70
11

Single-molecule imaging of DNA gyrase activity in living Escherichia coli.
Mathew Stracy, Adam J M Wollman, Elzbieta Kaja, Jacek Gapinski, Ji-Eun Lee, Victoria A Leek, Shannon J McKie, Lesley A Mitchenall, Anthony Maxwell, David J Sherratt,[...]. Nucleic Acids Res 2019
39
20

Synergistic Coordination of Chromatin Torsional Mechanics and Topoisomerase Activity.
Tung T Le, Xiang Gao, Seong Ha Park, Jaeyoon Lee, James T Inman, Joyce H Lee, Jessica L Killian, Ryan P Badman, James M Berger, Michelle D Wang. Cell 2019
29
27

Topological challenges to DNA replication: conformations at the fork.
L Postow, N J Crisona, B J Peter, C D Hardy, N R Cozzarelli. Proc Natl Acad Sci U S A 2001
184
8




Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli.
Brian J Peter, Javier Arsuaga, Adam M Breier, Arkady B Khodursky, Patrick O Brown, Nicholas R Cozzarelli. Genome Biol 2004
223
8


Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders.
Liis Uusküla-Reimand, Huayun Hou, Payman Samavarchi-Tehrani, Matteo Vietri Rudan, Minggao Liang, Alejandra Medina-Rivera, Hisham Mohammed, Dominic Schmidt, Petra Schwalie, Edwin J Young,[...]. Genome Biol 2016
138
8

The dynamic response of upstream DNA to transcription-generated torsional stress.
Fedor Kouzine, Juhong Liu, Suzanne Sanford, Hye-Jung Chung, David Levens. Nat Struct Mol Biol 2004
117
8

Target genes of Topoisomerase IIβ regulate neuronal survival and are defined by their chromatin state.
Vijay K Tiwari, Lukas Burger, Vassiliki Nikoletopoulou, Ruben Deogracias, Sudhir Thakurela, Christiane Wirbelauer, Johannes Kaut, Remi Terranova, Leslie Hoerner, Christian Mielke,[...]. Proc Natl Acad Sci U S A 2012
115
8


DNA supercoiling - a global transcriptional regulator for enterobacterial growth?
Andrew Travers, Georgi Muskhelishvili. Nat Rev Microbiol 2005
219
8

DNA topoisomerases and their poisoning by anticancer and antibacterial drugs.
Yves Pommier, Elisabetta Leo, HongLiang Zhang, Christophe Marchand. Chem Biol 2010
7



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.