L F Liu, J C Wang. Proc Natl Acad Sci U S A 1987
Times Cited: 1550
Times Cited: 1550
Times Cited
Times Co-cited
Similarity
Transcription-dependent dynamic supercoiling is a short-range genomic force.
Fedor Kouzine, Ashutosh Gupta, Laura Baranello, Damian Wojtowicz, Khadija Ben-Aissa, Juhong Liu, Teresa M Przytycka, David Levens. Nat Struct Mol Biol 2013
Fedor Kouzine, Ashutosh Gupta, Laura Baranello, Damian Wojtowicz, Khadija Ben-Aissa, Juhong Liu, Teresa M Przytycka, David Levens. Nat Struct Mol Biol 2013
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Transcription-generated torsional stress destabilizes nucleosomes.
Sheila S Teves, Steven Henikoff. Nat Struct Mol Biol 2014
Sheila S Teves, Steven Henikoff. Nat Struct Mol Biol 2014
21
Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures.
Catherine Naughton, Nicolaos Avlonitis, Samuel Corless, James G Prendergast, Ioulia K Mati, Paul P Eijk, Scott L Cockroft, Mark Bradley, Bauke Ylstra, Nick Gilbert. Nat Struct Mol Biol 2013
Catherine Naughton, Nicolaos Avlonitis, Samuel Corless, James G Prendergast, Ioulia K Mati, Paul P Eijk, Scott L Cockroft, Mark Bradley, Bauke Ylstra, Nick Gilbert. Nat Struct Mol Biol 2013
21
Long-Distance Cooperative and Antagonistic RNA Polymerase Dynamics via DNA Supercoiling.
Sangjin Kim, Bruno Beltran, Irnov Irnov, Christine Jacobs-Wagner. Cell 2019
Sangjin Kim, Bruno Beltran, Irnov Irnov, Christine Jacobs-Wagner. Cell 2019
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Roles of eukaryotic topoisomerases in transcription, replication and genomic stability.
Yves Pommier, Yilun Sun, Shar-Yin N Huang, John L Nitiss. Nat Rev Mol Cell Biol 2016
Yves Pommier, Yilun Sun, Shar-Yin N Huang, John L Nitiss. Nat Rev Mol Cell Biol 2016
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Mechanism of transcriptional bursting in bacteria.
Shasha Chong, Chongyi Chen, Hao Ge, X Sunney Xie. Cell 2014
Shasha Chong, Chongyi Chen, Hao Ge, X Sunney Xie. Cell 2014
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Transcription generates positively and negatively supercoiled domains in the template.
H Y Wu, S H Shyy, J C Wang, L F Liu. Cell 1988
H Y Wu, S H Shyy, J C Wang, L F Liu. Cell 1988
15
Cellular roles of DNA topoisomerases: a molecular perspective.
James C Wang. Nat Rev Mol Cell Biol 2002
James C Wang. Nat Rev Mol Cell Biol 2002
14
DNA supercoiling and transcription in bacteria: a two-way street.
Charles J Dorman. BMC Mol Cell Biol 2019
Charles J Dorman. BMC Mol Cell Biol 2019
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Topoisomerases facilitate transcription of long genes linked to autism.
Ian F King, Chandri N Yandava, Angela M Mabb, Jack S Hsiao, Hsien-Sung Huang, Brandon L Pearson, J Mauro Calabrese, Joshua Starmer, Joel S Parker, Terry Magnuson,[...]. Nature 2013
Ian F King, Chandri N Yandava, Angela M Mabb, Jack S Hsiao, Hsien-Sung Huang, Brandon L Pearson, J Mauro Calabrese, Joshua Starmer, Joel S Parker, Terry Magnuson,[...]. Nature 2013
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RNA Polymerase II Regulates Topoisomerase 1 Activity to Favor Efficient Transcription.
Laura Baranello, Damian Wojtowicz, Kairong Cui, Ballachanda N Devaiah, Hye-Jung Chung, Ka Yim Chan-Salis, Rajarshi Guha, Kelli Wilson, Xiaohu Zhang, Hongliang Zhang,[...]. Cell 2016
Laura Baranello, Damian Wojtowicz, Kairong Cui, Ballachanda N Devaiah, Hye-Jung Chung, Ka Yim Chan-Salis, Rajarshi Guha, Kelli Wilson, Xiaohu Zhang, Hongliang Zhang,[...]. Cell 2016
13
The functional response of upstream DNA to dynamic supercoiling in vivo.
Fedor Kouzine, Suzanne Sanford, Zichrini Elisha-Feil, David Levens. Nat Struct Mol Biol 2008
Fedor Kouzine, Suzanne Sanford, Zichrini Elisha-Feil, David Levens. Nat Struct Mol Biol 2008
13
Roles of topoisomerases in maintaining steady-state DNA supercoiling in Escherichia coli.
E L Zechiedrich, A B Khodursky, S Bachellier, R Schneider, D Chen, D M Lilley, N R Cozzarelli. J Biol Chem 2000
E L Zechiedrich, A B Khodursky, S Bachellier, R Schneider, D Chen, D M Lilley, N R Cozzarelli. J Biol Chem 2000
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All tangled up: how cells direct, manage and exploit topoisomerase function.
Seychelle M Vos, Elsa M Tretter, Bryan H Schmidt, James M Berger. Nat Rev Mol Cell Biol 2011
Seychelle M Vos, Elsa M Tretter, Bryan H Schmidt, James M Berger. Nat Rev Mol Cell Biol 2011
12
Single-nucleotide-resolution mapping of DNA gyrase cleavage sites across the Escherichia coli genome.
Dmitry Sutormin, Natalia Rubanova, Maria Logacheva, Dmitry Ghilarov, Konstantin Severinov. Nucleic Acids Res 2019
Dmitry Sutormin, Natalia Rubanova, Maria Logacheva, Dmitry Ghilarov, Konstantin Severinov. Nucleic Acids Res 2019
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Bacterial nucleoid-associated proteins, nucleoid structure and gene expression.
Shane C Dillon, Charles J Dorman. Nat Rev Microbiol 2010
Shane C Dillon, Charles J Dorman. Nat Rev Microbiol 2010
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Genome scale patterns of supercoiling in a bacterial chromosome.
Avantika Lal, Amlanjyoti Dhar, Andrei Trostel, Fedor Kouzine, Aswin S N Seshasayee, Sankar Adhya. Nat Commun 2016
Avantika Lal, Amlanjyoti Dhar, Andrei Trostel, Fedor Kouzine, Aswin S N Seshasayee, Sankar Adhya. Nat Commun 2016
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11
DNA gyrase: an enzyme that introduces superhelical turns into DNA.
M Gellert, K Mizuuchi, M H O'Dea, H A Nash. Proc Natl Acad Sci U S A 1976
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Activity-Induced DNA Breaks Govern the Expression of Neuronal Early-Response Genes.
Ram Madabhushi, Fan Gao, Andreas R Pfenning, Ling Pan, Satoko Yamakawa, Jinsoo Seo, Richard Rueda, Trongha X Phan, Hidekuni Yamakawa, Ping-Chieh Pao,[...]. Cell 2015
Ram Madabhushi, Fan Gao, Andreas R Pfenning, Ling Pan, Satoko Yamakawa, Jinsoo Seo, Richard Rueda, Trongha X Phan, Hidekuni Yamakawa, Ping-Chieh Pao,[...]. Cell 2015
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Regulation of the genes for E. coli DNA gyrase: homeostatic control of DNA supercoiling.
R Menzel, M Gellert. Cell 1983
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10
Torque and dynamics of linking number relaxation in stretched supercoiled DNA.
John F Marko. Phys Rev E Stat Nonlin Soft Matter Phys 2007
John F Marko. Phys Rev E Stat Nonlin Soft Matter Phys 2007
10
A topoisomerase IIbeta-mediated dsDNA break required for regulated transcription.
Bong-Gun Ju, Victoria V Lunyak, Valentina Perissi, Ivan Garcia-Bassets, David W Rose, Christopher K Glass, Michael G Rosenfeld. Science 2006
Bong-Gun Ju, Victoria V Lunyak, Valentina Perissi, Ivan Garcia-Bassets, David W Rose, Christopher K Glass, Michael G Rosenfeld. Science 2006
10
Androgen-induced TOP2B-mediated double-strand breaks and prostate cancer gene rearrangements.
Michael C Haffner, Martin J Aryee, Antoun Toubaji, David M Esopi, Roula Albadine, Bora Gurel, William B Isaacs, G Steven Bova, Wennuan Liu, Jianfeng Xu,[...]. Nat Genet 2010
Michael C Haffner, Martin J Aryee, Antoun Toubaji, David M Esopi, Roula Albadine, Bora Gurel, William B Isaacs, G Steven Bova, Wennuan Liu, Jianfeng Xu,[...]. Nat Genet 2010
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Bacterial genome architecture shapes global transcriptional regulation by DNA supercoiling.
Bilal El Houdaigui, Raphaël Forquet, Thomas Hindré, Dominique Schneider, William Nasser, Sylvie Reverchon, Sam Meyer. Nucleic Acids Res 2019
Bilal El Houdaigui, Raphaël Forquet, Thomas Hindré, Dominique Schneider, William Nasser, Sylvie Reverchon, Sam Meyer. Nucleic Acids Res 2019
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9
Transcription facilitated genome-wide recruitment of topoisomerase I and DNA gyrase.
Wareed Ahmed, Claudia Sala, Shubhada R Hegde, Rajiv Kumar Jha, Stewart T Cole, Valakunja Nagaraja. PLoS Genet 2017
Wareed Ahmed, Claudia Sala, Shubhada R Hegde, Rajiv Kumar Jha, Stewart T Cole, Valakunja Nagaraja. PLoS Genet 2017
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Rates of gyrase supercoiling and transcription elongation control supercoil density in a bacterial chromosome.
Nikolay Rovinskiy, Andrews Akwasi Agbleke, Olga Chesnokova, Zhenhua Pang, N Patrick Higgins. PLoS Genet 2012
Nikolay Rovinskiy, Andrews Akwasi Agbleke, Olga Chesnokova, Zhenhua Pang, N Patrick Higgins. PLoS Genet 2012
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Topological domain structure of the Escherichia coli chromosome.
Lisa Postow, Christine D Hardy, Javier Arsuaga, Nicholas R Cozzarelli. Genes Dev 2004
Lisa Postow, Christine D Hardy, Javier Arsuaga, Nicholas R Cozzarelli. Genes Dev 2004
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Genome Organization Drives Chromosome Fragility.
Andres Canela, Yaakov Maman, Seolkyoung Jung, Nancy Wong, Elsa Callen, Amanda Day, Kyong-Rim Kieffer-Kwon, Aleksandra Pekowska, Hongliang Zhang, Suhas S P Rao,[...]. Cell 2017
Andres Canela, Yaakov Maman, Seolkyoung Jung, Nancy Wong, Elsa Callen, Amanda Day, Kyong-Rim Kieffer-Kwon, Aleksandra Pekowska, Hongliang Zhang, Suhas S P Rao,[...]. Cell 2017
9
High-resolution, genome-wide mapping of positive supercoiling in chromosomes.
Monica S Guo, Ryo Kawamura, Megan L Littlehale, John F Marko, Michael T Laub. Elife 2021
Monica S Guo, Ryo Kawamura, Megan L Littlehale, John F Marko, Michael T Laub. Elife 2021
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Escherichia coli DNA topoisomerase I inhibits R-loop formation by relaxing transcription-induced negative supercoiling.
E Massé, M Drolet. J Biol Chem 1999
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Direct interaction between Escherichia coli RNA polymerase and the zinc ribbon domains of DNA topoisomerase I.
Bokun Cheng, Chang-Xi Zhu, Chengling Ji, Adriana Ahumada, Yuk-Ching Tse-Dinh. J Biol Chem 2003
Bokun Cheng, Chang-Xi Zhu, Chengling Ji, Adriana Ahumada, Yuk-Ching Tse-Dinh. J Biol Chem 2003
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Single-molecule imaging of DNA gyrase activity in living Escherichia coli.
Mathew Stracy, Adam J M Wollman, Elzbieta Kaja, Jacek Gapinski, Ji-Eun Lee, Victoria A Leek, Shannon J McKie, Lesley A Mitchenall, Anthony Maxwell, David J Sherratt,[...]. Nucleic Acids Res 2019
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Synergistic Coordination of Chromatin Torsional Mechanics and Topoisomerase Activity.
Tung T Le, Xiang Gao, Seong Ha Park, Jaeyoon Lee, James T Inman, Joyce H Lee, Jessica L Killian, Ryan P Badman, James M Berger, Michelle D Wang. Cell 2019
Tung T Le, Xiang Gao, Seong Ha Park, Jaeyoon Lee, James T Inman, Joyce H Lee, Jessica L Killian, Ryan P Badman, James M Berger, Michelle D Wang. Cell 2019
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Topological challenges to DNA replication: conformations at the fork.
L Postow, N J Crisona, B J Peter, C D Hardy, N R Cozzarelli. Proc Natl Acad Sci U S A 2001
L Postow, N J Crisona, B J Peter, C D Hardy, N R Cozzarelli. Proc Natl Acad Sci U S A 2001
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Transcription rate and transcript length drive formation of chromosomal interaction domain boundaries.
Tung Bk Le, Michael T Laub. EMBO J 2016
Tung Bk Le, Michael T Laub. EMBO J 2016
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Transcription-coupled DNA supercoiling dictates the chromosomal arrangement of bacterial genes.
Patrick Sobetzko. Nucleic Acids Res 2016
Patrick Sobetzko. Nucleic Acids Res 2016
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DNA supercoiling is a fundamental regulatory principle in the control of bacterial gene expression.
Charles J Dorman, Matthew J Dorman. Biophys Rev 2016
Charles J Dorman, Matthew J Dorman. Biophys Rev 2016
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Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli.
Brian J Peter, Javier Arsuaga, Adam M Breier, Arkady B Khodursky, Patrick O Brown, Nicholas R Cozzarelli. Genome Biol 2004
Brian J Peter, Javier Arsuaga, Adam M Breier, Arkady B Khodursky, Patrick O Brown, Nicholas R Cozzarelli. Genome Biol 2004
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Transcription-driven supercoiling of DNA: direct biochemical evidence from in vitro studies.
Y P Tsao, H Y Wu, L F Liu. Cell 1989
Y P Tsao, H Y Wu, L F Liu. Cell 1989
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Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders.
Liis Uusküla-Reimand, Huayun Hou, Payman Samavarchi-Tehrani, Matteo Vietri Rudan, Minggao Liang, Alejandra Medina-Rivera, Hisham Mohammed, Dominic Schmidt, Petra Schwalie, Edwin J Young,[...]. Genome Biol 2016
Liis Uusküla-Reimand, Huayun Hou, Payman Samavarchi-Tehrani, Matteo Vietri Rudan, Minggao Liang, Alejandra Medina-Rivera, Hisham Mohammed, Dominic Schmidt, Petra Schwalie, Edwin J Young,[...]. Genome Biol 2016
8
The dynamic response of upstream DNA to transcription-generated torsional stress.
Fedor Kouzine, Juhong Liu, Suzanne Sanford, Hye-Jung Chung, David Levens. Nat Struct Mol Biol 2004
Fedor Kouzine, Juhong Liu, Suzanne Sanford, Hye-Jung Chung, David Levens. Nat Struct Mol Biol 2004
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Target genes of Topoisomerase IIβ regulate neuronal survival and are defined by their chromatin state.
Vijay K Tiwari, Lukas Burger, Vassiliki Nikoletopoulou, Ruben Deogracias, Sudhir Thakurela, Christiane Wirbelauer, Johannes Kaut, Remi Terranova, Leslie Hoerner, Christian Mielke,[...]. Proc Natl Acad Sci U S A 2012
Vijay K Tiwari, Lukas Burger, Vassiliki Nikoletopoulou, Ruben Deogracias, Sudhir Thakurela, Christiane Wirbelauer, Johannes Kaut, Remi Terranova, Leslie Hoerner, Christian Mielke,[...]. Proc Natl Acad Sci U S A 2012
8
DNA topoisomerases: Advances in understanding of cellular roles and multi-protein complexes via structure-function analysis.
Shannon J McKie, Keir C Neuman, Anthony Maxwell. Bioessays 2021
Shannon J McKie, Keir C Neuman, Anthony Maxwell. Bioessays 2021
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DNA supercoiling - a global transcriptional regulator for enterobacterial growth?
Andrew Travers, Georgi Muskhelishvili. Nat Rev Microbiol 2005
Andrew Travers, Georgi Muskhelishvili. Nat Rev Microbiol 2005
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DNA topoisomerases and their poisoning by anticancer and antibacterial drugs.
Yves Pommier, Elisabetta Leo, HongLiang Zhang, Christophe Marchand. Chem Biol 2010
Yves Pommier, Elisabetta Leo, HongLiang Zhang, Christophe Marchand. Chem Biol 2010
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Escherichia coli DNA topoisomerase I mutants: increased supercoiling is corrected by mutations near gyrase genes.
G J Pruss, S H Manes, K Drlica. Cell 1982
G J Pruss, S H Manes, K Drlica. Cell 1982
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Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.