A citation-based method for searching scientific literature

Michael Winkler, Sabine Gärtner, Florian Wrensch, Michael Krawczak, Ulrike Sauermann, Stefan Pöhlmann. PLoS One 2017
Times Cited: 5







List of co-cited articles
12 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



The IFITM proteins mediate cellular resistance to influenza A H1N1 virus, West Nile virus, and dengue virus.
Abraham L Brass, I-Chueh Huang, Yair Benita, Sinu P John, Manoj N Krishnan, Eric M Feeley, Bethany J Ryan, Jessica L Weyer, Louise van der Weyden, Erol Fikrig,[...]. Cell 2009
849
60

The CD225 domain of IFITM3 is required for both IFITM protein association and inhibition of influenza A virus and dengue virus replication.
Sinu P John, Christopher R Chin, Jill M Perreira, Eric M Feeley, Aaron M Aker, George Savidis, Sarah E Smith, Andrew E H Elia, Aaron R Everitt, Mehul Vora,[...]. J Virol 2013
114
40

Interferon-Induced Transmembrane Protein-Mediated Inhibition of Host Cell Entry of Ebolaviruses.
Florian Wrensch, Christina B Karsten, Kerstin Gnirß, Markus Hoffmann, Kai Lu, Ayato Takada, Michael Winkler, Graham Simmons, Stefan Pöhlmann. J Infect Dis 2015
37
40

Nonhuman Primate IFITM Proteins Are Potent Inhibitors of HIV and SIV.
Jordan Wilkins, Yi-Min Zheng, Jingyou Yu, Chen Liang, Shan-Lu Liu. PLoS One 2016
18
40

Distinct patterns of IFITM-mediated restriction of filoviruses, SARS coronavirus, and influenza A virus.
I-Chueh Huang, Charles C Bailey, Jessica L Weyer, Sheli R Radoshitzky, Michelle M Becker, Jessica J Chiang, Abraham L Brass, Asim A Ahmed, Xiaoli Chi, Lian Dong,[...]. PLoS Pathog 2011
380
40

IFITM proteins restrict viral membrane hemifusion.
Kun Li, Ruben M Markosyan, Yi-Min Zheng, Ottavia Golfetto, Brittani Bungart, Minghua Li, Shilei Ding, Yuxian He, Chen Liang, James C Lee,[...]. PLoS Pathog 2013
214
40

Interference with the production of infectious viral particles and bimodal inhibition of replication are broadly conserved antiviral properties of IFITMs.
Kevin Tartour, Xuan-Nhi Nguyen, Romain Appourchaux, Sonia Assil, Véronique Barateau, Louis-Marie Bloyet, Julien Burlaud Gaillard, Marie-Pierre Confort, Beatriz Escudero-Perez, Henri Gruffat,[...]. PLoS Pathog 2017
35
40

IFITM3 restricts influenza A virus entry by blocking the formation of fusion pores following virus-endosome hemifusion.
Tanay M Desai, Mariana Marin, Christopher R Chin, George Savidis, Abraham L Brass, Gregory B Melikyan. PLoS Pathog 2014
178
40

Interferon-induced transmembrane proteins inhibit cell fusion mediated by trophoblast syncytins.
Ashley Zani, Lizhi Zhang, Temet M McMichael, Adam D Kenney, Mahesh Chemudupati, Jesse J Kwiek, Shan-Lu Liu, Jacob S Yount. J Biol Chem 2019
29
40

Homology-guided identification of a conserved motif linking the antiviral functions of IFITM3 to its oligomeric state.
Kazi Rahman, Charles A Coomer, Saliha Majdoul, Selena Y Ding, Sergi Padilla-Parra, Alex A Compton. Elife 2020
18
40

IFITM-Family Proteins: The Cell's First Line of Antiviral Defense.
Charles C Bailey, Guocai Zhong, I-Chueh Huang, Michael Farzan. Annu Rev Virol 2014
230
40

Eukaryotic elongation factor 1 complex subunits are critical HIV-1 reverse transcription cofactors.
Kylie Warren, Ting Wei, Dongsheng Li, Fangyun Qin, David Warrilow, Min-Hsuan Lin, Haran Sivakumaran, Ann Apolloni, Catherine M Abbott, Alun Jones,[...]. Proc Natl Acad Sci U S A 2012
41
20

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.
Cole Trapnell, Brian A Williams, Geo Pertea, Ali Mortazavi, Gordon Kwan, Marijke J van Baren, Steven L Salzberg, Barbara J Wold, Lior Pachter. Nat Biotechnol 2010
20

Genome-wide mRNA expression correlates of viral control in CD4+ T-cells from HIV-1-infected individuals.
Margalida Rotger, Kristen K Dang, Jacques Fellay, Erin L Heinzen, Sheng Feng, Patrick Descombes, Kevin V Shianna, Dongliang Ge, Huldrych F Günthard, David B Goldstein,[...]. PLoS Pathog 2010
130
20

Cleavage of p21Cip1/Waf1 and p27Kip1 mediates apoptosis in endothelial cells through activation of Cdk2: role of a caspase cascade.
B Levkau, H Koyama, E W Raines, B E Clurman, B Herren, K Orth, J M Roberts, R Ross. Mol Cell 1998
403
20

Impaired replication capacity of acute/early viruses in persons who become HIV controllers.
Toshiyuki Miura, Zabrina L Brumme, Mark A Brockman, Pamela Rosato, Jennifer Sela, Chanson J Brumme, Florencia Pereyra, Daniel E Kaufmann, Alicja Trocha, Brian L Block,[...]. J Virol 2010
100
20

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions.
Daehwan Kim, Geo Pertea, Cole Trapnell, Harold Pimentel, Ryan Kelley, Steven L Salzberg. Genome Biol 2013
20

CD4+ T cells from elite controllers resist HIV-1 infection by selective upregulation of p21.
Huabiao Chen, Chun Li, Jinghe Huang, Thai Cung, Katherine Seiss, Jill Beamon, Mary F Carrington, Lindsay C Porter, Patrick S Burke, Yue Yang,[...]. J Clin Invest 2011
130
20

Induction of OAS gene family in HIV monocyte infected patients with high and low viral load.
P Fagone, G Nunnari, F Lazzara, A Longo, D Cambria, G Distefano, M Palumbo, F Nicoletti, L Malaguarnera, M Di Rosa. Antiviral Res 2016
30
20

Microarray data on gene modulation by HIV-1 in immune cells: 2000-2006.
Malavika S Giri, Michael Nebozhyn, Louise Showe, Luis J Montaner. J Leukoc Biol 2006
84
20

Interferome v2.0: an updated database of annotated interferon-regulated genes.
Irina Rusinova, Sam Forster, Simon Yu, Anitha Kannan, Marion Masse, Helen Cumming, Ross Chapman, Paul J Hertzog. Nucleic Acids Res 2013
472
20

The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.
Florencia Pereyra, Xiaoming Jia, Paul J McLaren, Amalio Telenti, Paul I W de Bakker, Bruce D Walker, Stephan Ripke, Chanson J Brumme, Sara L Pulit, Mary Carrington,[...]. Science 2010
806
20


Identification of patterns in biological sequences at the ALGGEN server: PROMO and MALGEN.
Domènec Farré, Romà Roset, Mario Huerta, José E Adsuara, Llorenç Roselló, M Mar Albà, Xavier Messeguer. Nucleic Acids Res 2003
632
20

A chemokine receptor CCR2 allele delays HIV-1 disease progression and is associated with a CCR5 promoter mutation.
L G Kostrikis, Y Huang, J P Moore, S M Wolinsky, L Zhang, Y Guo, L Deutsch, J Phair, A U Neumann, D D Ho. Nat Med 1998
326
20

Improvement of HIV-1 coreceptor tropism prediction by employing selected nucleotide positions of the env gene in a Bayesian network classifier.
Francisco Díez-Fuertes, Elena Delgado, Yolanda Vega, Aurora Fernández-García, María Teresa Cuevas, Milagros Pinilla, Valentina García, Lucía Pérez-Álvarez, Michael M Thomson. J Antimicrob Chemother 2013
10
20

Protein phosphatase 2A enhances activation of human immunodeficiency virus type 1 by phorbol myristate acetate.
Neil E Faulkner, Brian R Lane, Paul J Bock, David M Markovitz. J Virol 2003
24
20

Antiviral activity of recombinant ankyrin targeted to the capsid domain of HIV-1 Gag polyprotein.
Sawitree Nangola, Agathe Urvoas, Marie Valerio-Lepiniec, Wannisa Khamaikawin, Supachai Sakkhachornphop, Saw-See Hong, Pierre Boulanger, Philippe Minard, Chatchai Tayapiwatana. Retrovirology 2012
22
20

Elite HIV controllers: myth or reality?
Nitin K Saksena, Berta Rodes, Bin Wang, Vincent Soriano. AIDS Rev 2007
36
20

Spontaneous control of viral load and CD4 cell count progression among HIV-1 seroconverters.
Yoann Madec, Faroudy Boufassa, Kholoud Porter, Laurence Meyer. AIDS 2005
72
20

Molecular and functional characterization of a novel splice variant of ANKHD1 that lacks the KH domain and its role in cell survival and apoptosis.
Melissa C Miles, Michelle L Janket, Elizabeth D A Wheeler, Ansuman Chattopadhyay, Biswanath Majumder, Jeremy Dericco, Elizabeth A Schafer, Velpandi Ayyavoo. FEBS J 2005
17
20


Clinical outcomes of elite controllers, viremic controllers, and long-term nonprogressors in the US Department of Defense HIV natural history study.
Jason F Okulicz, Vincent C Marconi, Michael L Landrum, Scott Wegner, Amy Weintrob, Anuradha Ganesan, Braden Hale, Nancy Crum-Cianflone, Judith Delmar, Vincent Barthel,[...]. J Infect Dis 2009
193
20

Transcriptional response to calcium-sensing receptor stimulation.
Gerald Thiel, Andrea Lesch, Anja Keim. Endocrinology 2012
41
20

AIDS restriction HLA allotypes target distinct intervals of HIV-1 pathogenesis.
Xiaojiang Gao, Arman Bashirova, Astrid K N Iversen, John Phair, James J Goedert, Susan Buchbinder, Keith Hoots, David Vlahov, Marcus Altfeld, Stephen J O'Brien,[...]. Nat Med 2005
156
20

RNA-Seq: a revolutionary tool for transcriptomics.
Zhong Wang, Mark Gerstein, Michael Snyder. Nat Rev Genet 2009
20

Vpr and HIV-1 disease progression: R77Q mutation is associated with long-term control of HIV-1 infection in different groups of patients.
Daniela Mologni, Paola Citterio, Barbara Menzaghi, Barbara Zanone Poma, Chiara Riva, Valentina Broggini, Alessandro Sinicco, Laura Milazzo, Fulvio Adorni, Stefano Rusconi,[...]. AIDS 2006
51
20

Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons.
Suguna Rani Krishnaswami, Rashel V Grindberg, Mark Novotny, Pratap Venepally, Benjamin Lacar, Kunal Bhutani, Sara B Linker, Son Pham, Jennifer A Erwin, Jeremy A Miller,[...]. Nat Protoc 2016
150
20


Shift in monocyte apoptosis with increasing viral load and change in apoptosis-related ISG/Bcl2 family gene expression in chronically HIV-1-infected subjects.
Sean C Patro, Sharmistha Pal, Yingtao Bi, Kenneth Lynn, Karam C Mounzer, Jay R Kostman, Ramana V Davuluri, Luis J Montaner. J Virol 2015
15
20


HIV-1 and interferons: who's interfering with whom?
Tomas Doyle, Caroline Goujon, Michael H Malim. Nat Rev Microbiol 2015
180
20

Dual effect of CCR5 delta 32 gene deletion in HIV-1-infected patients. Copenhagen AIDS Study Group.
P Garred, J Eugen-Olsen, A K Iversen, T L Benfield, A Svejgaard, B Hofmann. Lancet 1997
47
20

A curated transcriptome dataset collection to investigate the immunobiology of HIV infection.
Jana Blazkova, Sabri Boughorbel, Scott Presnell, Charlie Quinn, Damien Chaussabel. F1000Res 2016
5
20

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases.
Chen Xie, Xizeng Mao, Jiaju Huang, Yang Ding, Jianmin Wu, Shan Dong, Lei Kong, Ge Gao, Chuan-Yun Li, Liping Wei. Nucleic Acids Res 2011
20

Human immunodeficiency virus type 1, human protein interaction database at NCBI.
William Fu, Brigitte E Sanders-Beer, Kenneth S Katz, Donna R Maglott, Kim D Pruitt, Roger G Ptak. Nucleic Acids Res 2009
173
20

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
20

Cytoscape: a software environment for integrated models of biomolecular interaction networks.
Paul Shannon, Andrew Markiel, Owen Ozier, Nitin S Baliga, Jonathan T Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker. Genome Res 2003
20



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.