A citation-based method for searching scientific literature

Hsiang-Chih Lu, Qiumin Tan, Maxime W C Rousseaux, Wei Wang, Ji-Yoen Kim, Ronald Richman, Ying-Wooi Wan, Szu-Ying Yeh, Jay M Patel, Xiuyun Liu, Tao Lin, Yoontae Lee, John D Fryer, Jing Han, Maria Chahrour, Richard H Finnell, Yunping Lei, Maria E Zurita-Jimenez, Priyanka Ahimaz, Kwame Anyane-Yeboa, Lionel Van Maldergem, Daphne Lehalle, Nolwenn Jean-Marcais, Anne-Laure Mosca-Boidron, Julien Thevenon, Margot A Cousin, Della E Bro, Brendan C Lanpher, Eric W Klee, Nora Alexander, Matthew N Bainbridge, Harry T Orr, Roy V Sillitoe, M Cecilia Ljungberg, Zhandong Liu, Christian P Schaaf, Huda Y Zoghbi. Nat Genet 2017
Times Cited: 58







List of co-cited articles
321 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


ATXN1 protein family and CIC regulate extracellular matrix remodeling and lung alveolarization.
Yoontae Lee, John D Fryer, Hyojin Kang, Juan Crespo-Barreto, Aaron B Bowman, Yan Gao, Juliette J Kahle, Jeong Soo Hong, Farrah Kheradmand, Harry T Orr,[...]. Dev Cell 2011
65
34

ATAXIN-1 interacts with the repressor Capicua in its native complex to cause SCA1 neuropathology.
Yung C Lam, Aaron B Bowman, Paymaan Jafar-Nejad, Janghoo Lim, Ronald Richman, John D Fryer, Eric D Hyun, Lisa A Duvick, Harry T Orr, Juan Botas,[...]. Cell 2006
207
32

The Capicua repressor--a general sensor of RTK signaling in development and disease.
Gerardo Jiménez, Stanislav Y Shvartsman, Ze'ev Paroush. J Cell Sci 2012
97
29

Inactivation of Capicua drives cancer metastasis.
Ross A Okimoto, Frank Breitenbuecher, Victor R Olivas, Wei Wu, Beatrice Gini, Matan Hofree, Saurabh Asthana, Gorjan Hrustanovic, Jennifer Flanagan, Asmin Tulpule,[...]. Nat Genet 2017
74
27

Fusion between CIC and DUX4 up-regulates PEA3 family genes in Ewing-like sarcomas with t(4;19)(q35;q13) translocation.
Miho Kawamura-Saito, Yukari Yamazaki, Keiko Kaneko, Noriyoshi Kawaguchi, Hiroaki Kanda, Hiroyuki Mukai, Takahiro Gotoh, Tohru Motoi, Masashi Fukayama, Hiroyuki Aburatani,[...]. Hum Mol Genet 2006
250
27

Mutations in CIC and FUBP1 contribute to human oligodendroglioma.
Chetan Bettegowda, Nishant Agrawal, Yuchen Jiao, Mark Sausen, Laura D Wood, Ralph H Hruban, Fausto J Rodriguez, Daniel P Cahill, Roger McLendon, Gregory Riggins,[...]. Science 2011
351
27

A new mode of DNA binding distinguishes Capicua from other HMG-box factors and explains its mutation patterns in cancer.
Marta Forés, Lucía Simón-Carrasco, Leiore Ajuria, Núria Samper, Sergio González-Crespo, Matthias Drosten, Mariano Barbacid, Gerardo Jiménez. PLoS Genet 2017
33
48

ERK/p90(RSK)/14-3-3 signalling has an impact on expression of PEA3 Ets transcription factors via the transcriptional repressor capicúa.
Kumara Dissanayake, Rachel Toth, Jamie Blakey, Olof Olsson, David G Campbell, Alan R Prescott, Carol MacKintosh. Biochem J 2011
74
25

Deficiency of Capicua disrupts bile acid homeostasis.
Eunjeong Kim, Sungjun Park, Nahyun Choi, Jieon Lee, Jeehyun Yoe, Soeun Kim, Hoe-Yune Jung, Kyong-Tai Kim, Hyojin Kang, John D Fryer,[...]. Sci Rep 2015
22
68

Inactivation of Capicua in adult mice causes T-cell lymphoblastic lymphoma.
Lucía Simón-Carrasco, Osvaldo Graña, Marina Salmón, Harrys K C Jacob, Alejandro Gutierrez, Gerardo Jiménez, Matthias Drosten, Mariano Barbacid. Genes Dev 2017
24
62


Exercise and genetic rescue of SCA1 via the transcriptional repressor Capicua.
John D Fryer, Peng Yu, Hyojin Kang, Caleigh Mandel-Brehm, Angela N Carter, Juan Crespo-Barreto, Yan Gao, Adriano Flora, Chad Shaw, Harry T Orr,[...]. Science 2011
95
22

Capicua DNA-binding sites are general response elements for RTK signaling in Drosophila.
Leiore Ajuria, Claudia Nieva, Clint Winkler, Dennis Kuo, Núria Samper, María José Andreu, Aharon Helman, Sergio González-Crespo, Ze'ev Paroush, Albert J Courey,[...]. Development 2011
72
22

Capicua deficiency induces autoimmunity and promotes follicular helper T cell differentiation via derepression of ETV5.
Sungjun Park, Seungwon Lee, Choong-Gu Lee, Guk Yeol Park, Hyebeen Hong, Jeon-Soo Lee, Young Min Kim, Sung Bae Lee, Daehee Hwang, Youn Soo Choi,[...]. Nat Commun 2017
18
72


A MAPK docking site is critical for downregulation of Capicua by Torso and EGFR RTK signaling.
Sergio Astigarraga, Rona Grossman, Julieta Díaz-Delfín, Carme Caelles, Ze'ev Paroush, Gerardo Jiménez. EMBO J 2007
98
20

miR-93/miR-106b/miR-375-CIC-CRABP1: a novel regulatory axis in prostate cancer progression.
Nahyun Choi, Jongmin Park, Jeon-Soo Lee, Jeehyun Yoe, Guk Yeol Park, Eunjeong Kim, Hyeongrin Jeon, Yong Mee Cho, Tae-Young Roh, Yoontae Lee. Oncotarget 2015
56
19

EGFR/Ras Signaling Controls Drosophila Intestinal Stem Cell Proliferation via Capicua-Regulated Genes.
Yinhua Jin, Nati Ha, Marta Forés, Jinyi Xiang, Christine Gläßer, Julieta Maldera, Gerardo Jiménez, Bruce A Edgar. PLoS Genet 2015
70
18

Loss of Capicua alters early T cell development and predisposes mice to T cell lymphoblastic leukemia/lymphoma.
Qiumin Tan, Lorenzo Brunetti, Maxime W C Rousseaux, Hsiang-Chih Lu, Ying-Wooi Wan, Jean-Pierre Revelli, Zhandong Liu, Margaret A Goodell, Huda Y Zoghbi. Proc Natl Acad Sci U S A 2018
21
52

Expansion of an unstable trinucleotide CAG repeat in spinocerebellar ataxia type 1.
H T Orr, M Y Chung, S Banfi, T J Kwiatkowski, A Servadio, A L Beaudet, A E McCall, L A Duvick, L P Ranum, H Y Zoghbi. Nat Genet 1993
17

CIC inactivating mutations identify aggressive subset of 1p19q codeleted gliomas.
Vincent Gleize, Agusti Alentorn, Léa Connen de Kérillis, Marianne Labussière, Aravidan A Nadaradjane, Emeline Mundwiller, Chris Ottolenghi, Stephanie Mangesius, Amithys Rahimian, François Ducray,[...]. Ann Neurol 2015
46
19

Concurrent CIC mutations, IDH mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers.
Stephen Yip, Yaron S Butterfield, Olena Morozova, Suganthi Chittaranjan, Michael D Blough, Jianghong An, Inanc Birol, Charles Chesnelong, Readman Chiu, Eric Chuah,[...]. J Pathol 2012
190
15

Capicua suppresses hepatocellular carcinoma progression by controlling the ETV4-MMP1 axis.
Eunjeong Kim, Donghyo Kim, Jeon-Soo Lee, Jeehyun Yoe, Jongmin Park, Chang-Jin Kim, Dongjun Jeong, Sanguk Kim, Yoontae Lee. Hepatology 2018
36
25

Capicua regulates cell proliferation downstream of the receptor tyrosine kinase/ras signaling pathway.
Ai-Sun Kelly Tseng, Nicolas Tapon, Hiroshi Kanda, Seden Cigizoglu, Lambert Edelmann, Brett Pellock, Kristin White, Iswar K Hariharan. Curr Biol 2007
65
13

Cic Loss Promotes Gliomagenesis via Aberrant Neural Stem Cell Proliferation and Differentiation.
Rui Yang, Lee H Chen, Landon J Hansen, Austin B Carpenter, Casey J Moure, Heng Liu, Christopher J Pirozzi, Bill H Diplas, Matthew S Waitkus, Paula K Greer,[...]. Cancer Res 2017
18
44

CIC, a member of a novel subfamily of the HMG-box superfamily, is transiently expressed in developing granule neurons.
Ching-Jung Lee, Wai-In Chan, Martin Cheung, Yi-Chuan Cheng, Vanessa J Appleby, Alex T Orme, Paul J Scotting. Brain Res Mol Brain Res 2002
50
16

Minibrain and Wings apart control organ growth and tissue patterning through down-regulation of Capicua.
Liu Yang, Sayantanee Paul, Kenneth G Trieu, Lucas G Dent, Francesca Froldi, Marta Forés, Kaitlyn Webster, Kellee R Siegfried, Shu Kondo, Kieran Harvey,[...]. Proc Natl Acad Sci U S A 2016
19
36


Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
12

Partial loss of ataxin-1 function contributes to transcriptional dysregulation in spinocerebellar ataxia type 1 pathogenesis.
Juan Crespo-Barreto, John D Fryer, Chad A Shaw, Harry T Orr, Huda Y Zoghbi. PLoS Genet 2010
84
12

ATXN1-CIC Complex Is the Primary Driver of Cerebellar Pathology in Spinocerebellar Ataxia Type 1 through a Gain-of-Function Mechanism.
Maxime W C Rousseaux, Tyler Tschumperlin, Hsiang-Chih Lu, Elizabeth P Lackey, Vitaliy V Bondar, Ying-Wooi Wan, Qiumin Tan, Carolyn J Adamski, Jillian Friedrich, Kirk Twaroski,[...]. Neuron 2018
36
19

The Tumor Suppressor CIC Directly Regulates MAPK Pathway Genes via Histone Deacetylation.
Simon Weissmann, Paul A Cloos, Simone Sidoli, Ole N Jensen, Steven Pollard, Kristian Helin. Cancer Res 2018
20
35

CIC protein instability contributes to tumorigenesis in glioblastoma.
Severa Bunda, Pardeep Heir, Julie Metcalf, Annie Si Cong Li, Sameer Agnihotri, Stefan Pusch, Mamatjan Yasin, Mira Li, Kelly Burrell, Sheila Mansouri,[...]. Nat Commun 2019
26
26

Opposing effects of polyglutamine expansion on native protein complexes contribute to SCA1.
Janghoo Lim, Juan Crespo-Barreto, Paymaan Jafar-Nejad, Aaron B Bowman, Ronald Richman, David E Hill, Harry T Orr, Huda Y Zoghbi. Nature 2008
225
10

ETV1, 4 and 5: an oncogenic subfamily of ETS transcription factors.
Sangphil Oh, Sook Shin, Ralf Janknecht. Biochim Biophys Acta 2012
155
10

ATXN1L, CIC, and ETS Transcription Factors Modulate Sensitivity to MAPK Pathway Inhibition.
Belinda Wang, Elsa Beyer Krall, Andrew James Aguirre, Miju Kim, Hans Ragnar Widlund, Mihir Bhavik Doshi, Ewa Sicinska, Rita Sulahian, Amy Goodale, Glenn Spencer Cowley,[...]. Cell Rep 2017
49
12

Mutations in CIC and IDH1 cooperatively regulate 2-hydroxyglutarate levels and cell clonogenicity.
Suganthi Chittaranjan, Susanna Chan, Cindy Yang, Kevin C Yang, Vincent Chen, Annie Moradian, Marlo Firme, Jungeun Song, Nancy E Go, Michael D Blough,[...]. Oncotarget 2014
24
25

Comparative transcriptome analysis of isogenic cell line models and primary cancers links capicua (CIC) loss to activation of the MAPK signalling cascade.
Veronique G LeBlanc, Marlo Firme, Jungeun Song, Susanna Y Chan, Min Hye Lee, Stephen Yip, Suganthi Chittaranjan, Marco A Marra. J Pathol 2017
15
40

Mapping the binding interface of ERK and transcriptional repressor Capicua using photocrosslinking.
Alan S Futran, Saw Kyin, Stanislav Y Shvartsman, A James Link. Proc Natl Acad Sci U S A 2015
29
20


The Capicua tumor suppressor: a gatekeeper of Ras signaling in development and cancer.
Lucía Simón-Carrasco, Gerardo Jiménez, Mariano Barbacid, Matthias Drosten. Cell Cycle 2018
17
35


Capicua regulates neural stem cell proliferation and lineage specification through control of Ets factors.
Shiekh Tanveer Ahmad, Alexandra D Rogers, Myra J Chen, Rajiv Dixit, Lata Adnani, Luke S Frankiw, Samuel O Lawn, Michael D Blough, Mana Alshehri, Wei Wu,[...]. Nat Commun 2019
14
42

Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2.
R E Amir, I B Van den Veyver, M Wan, C Q Tran, U Francke, H Y Zoghbi. Nat Genet 1999
8

A native interactor scaffolds and stabilizes toxic ATAXIN-1 oligomers in SCA1.
Cristian A Lasagna-Reeves, Maxime Wc Rousseaux, Marcos J Guerrero-Muñoz, Jeehye Park, Paymaan Jafar-Nejad, Ronald Richman, Nan Lu, Urmi Sengupta, Alexandra Litvinchuk, Harry T Orr,[...]. Elife 2015
20
25

Torso RTK controls Capicua degradation by changing its subcellular localization.
Oliver Grimm, Victoria Sanchez Zini, Yoosik Kim, Jordi Casanova, Stanislav Y Shvartsman, Eric Wieschaus. Development 2012
42
11

A double-edged sword: The world according to Capicua in cancer.
Miwa Tanaka, Toyoki Yoshimoto, Takuro Nakamura. Cancer Sci 2017
14
35

Kinetics of gene derepression by ERK signaling.
Bomyi Lim, Núria Samper, Hang Lu, Christine Rushlow, Gerardo Jiménez, Stanislav Y Shvartsman. Proc Natl Acad Sci U S A 2013
40
12

Reversal of phenotypes in MECP2 duplication mice using genetic rescue or antisense oligonucleotides.
Yehezkel Sztainberg, Hong-mei Chen, John W Swann, Shuang Hao, Bin Tang, Zhenyu Wu, Jianrong Tang, Ying-Wooi Wan, Zhandong Liu, Frank Rigo,[...]. Nature 2015
96
8

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.