A citation-based method for searching scientific literature

Ray K Boyapati, Arina Tamborska, David A Dorward, Gwo-Tzer Ho. F1000Res 2017
Times Cited: 76







List of co-cited articles
682 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Circulating mitochondrial DAMPs cause inflammatory responses to injury.
Qin Zhang, Mustafa Raoof, Yu Chen, Yuka Sumi, Tolga Sursal, Wolfgang Junger, Karim Brohi, Kiyoshi Itagaki, Carl J Hauser. Nature 2010
44

Mitochondrial DNA in innate immune responses and inflammatory pathology.
A Phillip West, Gerald S Shadel. Nat Rev Immunol 2017
300
27

Circulating mitochondrial DNA in patients in the ICU as a marker of mortality: derivation and validation.
Kiichi Nakahira, Sun-Young Kyung, Angela J Rogers, Lee Gazourian, Sojung Youn, Anthony F Massaro, Carolina Quintana, Juan C Osorio, Zhaoxi Wang, Yang Zhao,[...]. PLoS Med 2013
235
23

Oxidized mitochondrial DNA activates the NLRP3 inflammasome during apoptosis.
Kenichi Shimada, Timothy R Crother, Justin Karlin, Jargalsaikhan Dagvadorj, Norika Chiba, Shuang Chen, V Krishnan Ramanujan, Andrea J Wolf, Laurent Vergnes, David M Ojcius,[...]. Immunity 2012
23

Autophagy proteins regulate innate immune responses by inhibiting the release of mitochondrial DNA mediated by the NALP3 inflammasome.
Kiichi Nakahira, Jeffrey Adam Haspel, Vijay A K Rathinam, Seon-Jin Lee, Tamas Dolinay, Hilaire C Lam, Joshua A Englert, Marlene Rabinovitch, Manuela Cernadas, Hong Pyo Kim,[...]. Nat Immunol 2011
19

Mitochondrial DNA that escapes from autophagy causes inflammation and heart failure.
Takafumi Oka, Shungo Hikoso, Osamu Yamaguchi, Manabu Taneike, Toshihiro Takeda, Takahito Tamai, Jota Oyabu, Tomokazu Murakawa, Hiroyuki Nakayama, Kazuhiko Nishida,[...]. Nature 2012
631
18

Endogenously oxidized mitochondrial DNA induces in vivo and in vitro inflammatory responses.
L Vincent Collins, Shahin Hajizadeh, Elisabeth Holme, Ing-Marie Jonsson, Andrej Tarkowski. J Leukoc Biol 2004
259
15

Hepatocyte mitochondrial DNA drives nonalcoholic steatohepatitis by activation of TLR9.
Irma Garcia-Martinez, Nicola Santoro, Yonglin Chen, Rafaz Hoque, Xinshou Ouyang, Sonia Caprio, Mark J Shlomchik, Robert Lee Coffman, Albert Candia, Wajahat Zafar Mehal. J Clin Invest 2016
209
15

Mitochondrial DNA stress primes the antiviral innate immune response.
A Phillip West, William Khoury-Hanold, Matthew Staron, Michal C Tal, Cristiana M Pineda, Sabine M Lang, Megan Bestwick, Brett A Duguay, Nuno Raimundo, Donna A MacDuff,[...]. Nature 2015
649
15

Role of Mitochondrial DNA in Septic AKI via Toll-Like Receptor 9.
Naoko Tsuji, Takayuki Tsuji, Naro Ohashi, Akihiko Kato, Yoshihide Fujigaki, Hideo Yasuda. J Am Soc Nephrol 2016
69
14

Plasma nuclear and mitochondrial DNA levels as predictors of outcome in severe sepsis patients in the emergency room.
Chia-Te Kung, Sheng-Yuan Hsiao, Tsung-Cheng Tsai, Chih-Min Su, Wen-Neng Chang, Chi-Ren Huang, Hung-Chen Wang, Wei-Che Lin, Hsueh-Wen Chang, Yu-Jun Lin,[...]. J Transl Med 2012
83
11


Mitochondrial permeability transition triggers the release of mtDNA fragments.
M Patrushev, V Kasymov, V Patrusheva, T Ushakova, V Gogvadze, A Gaziev. Cell Mol Life Sci 2004
66
13

Emerging role of damage-associated molecular patterns derived from mitochondria in inflammation.
Dmitri V Krysko, Patrizia Agostinis, Olga Krysko, Abhishek D Garg, Claus Bachert, Bart N Lambrecht, Peter Vandenabeele. Trends Immunol 2011
395
11

The Roles of Mitochondrial Damage-Associated Molecular Patterns in Diseases.
Kiichi Nakahira, Shu Hisata, Augustine M K Choi. Antioxid Redox Signal 2015
113
10

Elevated levels of plasma mitochondrial DNA DAMPs are linked to clinical outcome in severely injured human subjects.
Jon D Simmons, Yann-Leei Lee, Sujata Mulekar, Jamie L Kuck, Sidney B Brevard, Richard P Gonzalez, Mark N Gillespie, William O Richards. Ann Surg 2013
130
10

Mitochondrial DNA induces inflammation and increases TLR9/NF-κB expression in lung tissue.
Jian-Zheng Zhang, Zhi Liu, Jia Liu, Ji-Xin Ren, Tian-Sheng Sun. Int J Mol Med 2014
123
10

Oxidized mitochondrial nucleoids released by neutrophils drive type I interferon production in human lupus.
Simone Caielli, Shruti Athale, Bojana Domic, Elise Murat, Manjari Chandra, Romain Banchereau, Jeanine Baisch, Kate Phelps, Sandra Clayton, Mei Gong,[...]. J Exp Med 2016
190
10

Cell-free circulating mitochondrial DNA content and risk of hepatocellular carcinoma in patients with chronic HBV infection.
Ling Li, Hie-Won Hann, Shaogui Wan, Richard S Hann, Chun Wang, Yinzhi Lai, Xishan Ye, Alison Evans, Ronald E Myers, Zhong Ye,[...]. Sci Rep 2016
43
18

Mitochondria in innate immune responses.
A Phillip West, Gerald S Shadel, Sankar Ghosh. Nat Rev Immunol 2011
690
10

Circulating mitochondrial DNA increases with age and is a familiar trait: Implications for "inflamm-aging".
Marcello Pinti, Elisa Cevenini, Milena Nasi, Sara De Biasi, Stefano Salvioli, Daniela Monti, Stefania Benatti, Lara Gibellini, Rodolfo Cotichini, Maria Antonietta Stazi,[...]. Eur J Immunol 2014
161
10

Mitochondrial DNA in the regulation of innate immune responses.
Chunju Fang, Xiawei Wei, Yuquan Wei. Protein Cell 2016
72
11

Mitochondrial DNA and Toll-Like Receptor-9 Are Associated With Mortality in Critically Ill Patients.
Konstantin A Krychtiuk, Sarah Ruhittel, Philipp J Hohensinner, Lorenz Koller, Christoph Kaun, Max Lenz, Benedikt Bauer, Lisa Wutzlhofer, Dominik F Draxler, Gerald Maurer,[...]. Crit Care Med 2015
40
17

Platelets release mitochondria serving as substrate for bactericidal group IIA-secreted phospholipase A2 to promote inflammation.
Luc H Boudreau, Anne-Claire Duchez, Nathalie Cloutier, Denis Soulet, Nicolas Martin, James Bollinger, Alexandre Paré, Matthieu Rousseau, Gajendra S Naika, Tania Lévesque,[...]. Blood 2014
272
9

Plasma mitochondrial DNA levels in patients with trauma and severe sepsis: time course and the association with clinical status.
Satoshi Yamanouchi, Daisuke Kudo, Mitsuhiro Yamada, Noriko Miyagawa, Hajime Furukawa, Shigeki Kushimoto. J Crit Care 2013
68
10

Neutrophil extracellular traps enriched in oxidized mitochondrial DNA are interferogenic and contribute to lupus-like disease.
Christian Lood, Luz P Blanco, Monica M Purmalek, Carmelo Carmona-Rivera, Suk S De Ravin, Carolyne K Smith, Harry L Malech, Jeffrey A Ledbetter, Keith B Elkon, Mariana J Kaplan. Nat Med 2016
557
9

Increased plasma levels of circulating cell-free mitochondrial DNA in suicide attempters: associations with HPA-axis hyperactivity.
D Lindqvist, J Fernström, C Grudet, L Ljunggren, L Träskman-Bendz, L Ohlsson, Å Westrin. Transl Psychiatry 2016
45
15

Cationic nanocarriers induce cell necrosis through impairment of Na(+)/K(+)-ATPase and cause subsequent inflammatory response.
Xiawei Wei, Bin Shao, Zhiyao He, Tinghong Ye, Min Luo, Yaxiong Sang, Xiao Liang, Wei Wang, Shuntao Luo, Shengyong Yang,[...]. Cell Res 2015
108
9

A role for mitochondria in NLRP3 inflammasome activation.
Rongbin Zhou, Amir S Yazdi, Philippe Menu, Jürg Tschopp. Nature 2011
9

Circulating cell-free mitochondrial DNA, but not leukocyte mitochondrial DNA copy number, is elevated in major depressive disorder.
Daniel Lindqvist, Owen M Wolkowitz, Martin Picard, Lars Ohlsson, Francesco S Bersani, Johan Fernström, Åsa Westrin, Christina M Hough, Jue Lin, Victor I Reus,[...]. Neuropsychopharmacology 2018
58
12

Mitochondria in the regulation of innate and adaptive immunity.
Samuel E Weinberg, Laura A Sena, Navdeep S Chandel. Immunity 2015
379
7

Pattern recognition receptors and inflammation.
Osamu Takeuchi, Shizuo Akira. Cell 2010
7

Premature ageing in mice expressing defective mitochondrial DNA polymerase.
Aleksandra Trifunovic, Anna Wredenberg, Maria Falkenberg, Johannes N Spelbrink, Anja T Rovio, Carl E Bruder, Mohammad Bohlooly-Y, Sebastian Gidlöf, Anders Oldfors, Rolf Wibom,[...]. Nature 2004
7

Plasma mitochondrial DNA concentrations after trauma.
Nicole Y L Lam, Timothy H Rainer, Rossa W K Chiu, Gavin M Joynt, Y M Dennis Lo. Clin Chem 2004
64
9

Astrocytes and Glioblastoma cells release exosomes carrying mtDNA.
Michele Guescini, Susanna Genedani, Vilberto Stocchi, Luigi Francesco Agnati. J Neural Transm (Vienna) 2010
359
7

Mitochondrial DNA: An Endogenous Trigger for Immune Paralysis.
Simon T Schäfer, Lars Franken, Michael Adamzik, Beatrix Schumak, André Scherag, Andrea Engler, Niels Schönborn, Jennifer Walden, Susanne Koch, Hideo A Baba,[...]. Anesthesiology 2016
45
11


Sterile inflammation: sensing and reacting to damage.
Grace Y Chen, Gabriel Nuñez. Nat Rev Immunol 2010
6

Significance of Serum mtDNA Concentration in Lung Injury Induced by Hip Fracture.
Li Gan, Xiaobin Chen, Tiansheng Sun, Qi Li, Ruhui Zhang, Jianzheng Zhang, Jianfeng Zhong. Shock 2015
25
20

Serum mitochondrial biomarkers and damage-associated molecular patterns are higher in acetaminophen overdose patients with poor outcome.
Mitchell R McGill, Vincent S Staggs, Matthew R Sharpe, William M Lee, Hartmut Jaeschke. Hepatology 2014
93
6

Intratracheal administration of mitochondrial DNA directly provokes lung inflammation through the TLR9-p38 MAPK pathway.
Xiaoling Gu, Guannan Wu, Yanwen Yao, Junli Zeng, Donghong Shi, Tangfeng Lv, Liang Luo, Yong Song. Free Radic Biol Med 2015
48
10

Extracellular mitochondrial DNA and oxidatively damaged DNA in synovial fluid of patients with rheumatoid arthritis.
Shahin Hajizadeh, Jeroen DeGroot, Johan M TeKoppele, Andrej Tarkowski, L Vincent Collins. Arthritis Res Ther 2003
98
6

Mitochondrial DNA released by trauma induces neutrophil extracellular traps.
Kiyoshi Itagaki, Elzbieta Kaczmarek, Yen Ting Lee, I Tien Tang, Burak Isal, Yashar Adibnia, Nicola Sandler, Melissa J Grimm, Brahm H Segal, Leo E Otterbein,[...]. PLoS One 2015
90
6

Neutrophil extracellular traps kill bacteria.
Volker Brinkmann, Ulrike Reichard, Christian Goosmann, Beatrix Fauler, Yvonne Uhlemann, David S Weiss, Yvette Weinrauch, Arturo Zychlinsky. Science 2004
6

DNA fragments in the blood plasma of cancer patients: quantitations and evidence for their origin from apoptotic and necrotic cells.
S Jahr, H Hentze, S Englisch, D Hardt, F O Fackelmayer, R D Hesch, R Knippers. Cancer Res 2001
6

Cell-free nucleic acids as biomarkers in cancer patients.
Heidi Schwarzenbach, Dave S B Hoon, Klaus Pantel. Nat Rev Cancer 2011
6

Mitochondrial DNA mutations, oxidative stress, and apoptosis in mammalian aging.
G C Kujoth, A Hiona, T D Pugh, S Someya, K Panzer, S E Wohlgemuth, T Hofer, A Y Seo, R Sullivan, W A Jobling,[...]. Science 2005
6

Mitochondrial allostatic load puts the 'gluc' back in glucocorticoids.
Martin Picard, Robert-Paul Juster, Bruce S McEwen. Nat Rev Endocrinol 2014
169
6

Chemokines and mitochondrial products activate neutrophils to amplify organ injury during mouse acute liver failure.
Pedro E Marques, Sylvia S Amaral, Daniele A Pires, Laura L Nogueira, Frederico M Soriani, Braulio H F Lima, Gabriel A O Lopes, Remo C Russo, Thiago V Avila, Juliana G Melgaço,[...]. Hepatology 2012
187
6

Tolerance, danger, and the extended family.
P Matzinger. Annu Rev Immunol 1994
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.