A citation-based method for searching scientific literature

Ray K Boyapati, Arina Tamborska, David A Dorward, Gwo-Tzer Ho. F1000Res 2017
Times Cited: 87







List of co-cited articles
802 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Circulating mitochondrial DAMPs cause inflammatory responses to injury.
Qin Zhang, Mustafa Raoof, Yu Chen, Yuka Sumi, Tolga Sursal, Wolfgang Junger, Karim Brohi, Kiyoshi Itagaki, Carl J Hauser. Nature 2010
43

Mitochondrial DNA in innate immune responses and inflammatory pathology.
A Phillip West, Gerald S Shadel. Nat Rev Immunol 2017
375
28

Circulating mitochondrial DNA in patients in the ICU as a marker of mortality: derivation and validation.
Kiichi Nakahira, Sun-Young Kyung, Angela J Rogers, Lee Gazourian, Sojung Youn, Anthony F Massaro, Carolina Quintana, Juan C Osorio, Zhaoxi Wang, Yang Zhao,[...]. PLoS Med 2013
262
24

Oxidized mitochondrial DNA activates the NLRP3 inflammasome during apoptosis.
Kenichi Shimada, Timothy R Crother, Justin Karlin, Jargalsaikhan Dagvadorj, Norika Chiba, Shuang Chen, V Krishnan Ramanujan, Andrea J Wolf, Laurent Vergnes, David M Ojcius,[...]. Immunity 2012
21

Autophagy proteins regulate innate immune responses by inhibiting the release of mitochondrial DNA mediated by the NALP3 inflammasome.
Kiichi Nakahira, Jeffrey Adam Haspel, Vijay A K Rathinam, Seon-Jin Lee, Tamas Dolinay, Hilaire C Lam, Joshua A Englert, Marlene Rabinovitch, Manuela Cernadas, Hong Pyo Kim,[...]. Nat Immunol 2011
19

Mitochondrial DNA stress primes the antiviral innate immune response.
A Phillip West, William Khoury-Hanold, Matthew Staron, Michal C Tal, Cristiana M Pineda, Sabine M Lang, Megan Bestwick, Brett A Duguay, Nuno Raimundo, Donna A MacDuff,[...]. Nature 2015
761
17

Endogenously oxidized mitochondrial DNA induces in vivo and in vitro inflammatory responses.
L Vincent Collins, Shahin Hajizadeh, Elisabeth Holme, Ing-Marie Jonsson, Andrej Tarkowski. J Leukoc Biol 2004
295
16

Mitochondrial DNA that escapes from autophagy causes inflammation and heart failure.
Takafumi Oka, Shungo Hikoso, Osamu Yamaguchi, Manabu Taneike, Toshihiro Takeda, Takahito Tamai, Jota Oyabu, Tomokazu Murakawa, Hiroyuki Nakayama, Kazuhiko Nishida,[...]. Nature 2012
688
16

Hepatocyte mitochondrial DNA drives nonalcoholic steatohepatitis by activation of TLR9.
Irma Garcia-Martinez, Nicola Santoro, Yonglin Chen, Rafaz Hoque, Xinshou Ouyang, Sonia Caprio, Mark J Shlomchik, Robert Lee Coffman, Albert Candia, Wajahat Zafar Mehal. J Clin Invest 2016
247
13

Plasma nuclear and mitochondrial DNA levels as predictors of outcome in severe sepsis patients in the emergency room.
Chia-Te Kung, Sheng-Yuan Hsiao, Tsung-Cheng Tsai, Chih-Min Su, Wen-Neng Chang, Chi-Ren Huang, Hung-Chen Wang, Wei-Che Lin, Hsueh-Wen Chang, Yu-Jun Lin,[...]. J Transl Med 2012
86
11

Role of Mitochondrial DNA in Septic AKI via Toll-Like Receptor 9.
Naoko Tsuji, Takayuki Tsuji, Naro Ohashi, Akihiko Kato, Yoshihide Fujigaki, Hideo Yasuda. J Am Soc Nephrol 2016
77
12

Oxidized mitochondrial nucleoids released by neutrophils drive type I interferon production in human lupus.
Simone Caielli, Shruti Athale, Bojana Domic, Elise Murat, Manjari Chandra, Romain Banchereau, Jeanine Baisch, Kate Phelps, Sandra Clayton, Mei Gong,[...]. J Exp Med 2016
221
11

Circulating mitochondrial DNA increases with age and is a familiar trait: Implications for "inflamm-aging".
Marcello Pinti, Elisa Cevenini, Milena Nasi, Sara De Biasi, Stefano Salvioli, Daniela Monti, Stefania Benatti, Lara Gibellini, Rodolfo Cotichini, Maria Antonietta Stazi,[...]. Eur J Immunol 2014
187
11

Emerging role of damage-associated molecular patterns derived from mitochondria in inflammation.
Dmitri V Krysko, Patrizia Agostinis, Olga Krysko, Abhishek D Garg, Claus Bachert, Bart N Lambrecht, Peter Vandenabeele. Trends Immunol 2011
425
11

Circulating cell-free mitochondrial DNA, but not leukocyte mitochondrial DNA copy number, is elevated in major depressive disorder.
Daniel Lindqvist, Owen M Wolkowitz, Martin Picard, Lars Ohlsson, Francesco S Bersani, Johan Fernström, Åsa Westrin, Christina M Hough, Jue Lin, Victor I Reus,[...]. Neuropsychopharmacology 2018
73
13


The Roles of Mitochondrial Damage-Associated Molecular Patterns in Diseases.
Kiichi Nakahira, Shu Hisata, Augustine M K Choi. Antioxid Redox Signal 2015
129
10

Mitochondrial permeability transition triggers the release of mtDNA fragments.
M Patrushev, V Kasymov, V Patrusheva, T Ushakova, V Gogvadze, A Gaziev. Cell Mol Life Sci 2004
81
11

Elevated levels of plasma mitochondrial DNA DAMPs are linked to clinical outcome in severely injured human subjects.
Jon D Simmons, Yann-Leei Lee, Sujata Mulekar, Jamie L Kuck, Sidney B Brevard, Richard P Gonzalez, Mark N Gillespie, William O Richards. Ann Surg 2013
145
10

Plasma mitochondrial DNA levels in patients with trauma and severe sepsis: time course and the association with clinical status.
Satoshi Yamanouchi, Daisuke Kudo, Mitsuhiro Yamada, Noriko Miyagawa, Hajime Furukawa, Shigeki Kushimoto. J Crit Care 2013
74
12

Mitochondrial DNA induces inflammation and increases TLR9/NF-κB expression in lung tissue.
Jian-Zheng Zhang, Zhi Liu, Jia Liu, Ji-Xin Ren, Tian-Sheng Sun. Int J Mol Med 2014
138
10

Neutrophil extracellular traps enriched in oxidized mitochondrial DNA are interferogenic and contribute to lupus-like disease.
Christian Lood, Luz P Blanco, Monica M Purmalek, Carmelo Carmona-Rivera, Suk S De Ravin, Carolyne K Smith, Harry L Malech, Jeffrey A Ledbetter, Keith B Elkon, Mariana J Kaplan. Nat Med 2016
657
10

Cell-free circulating mitochondrial DNA content and risk of hepatocellular carcinoma in patients with chronic HBV infection.
Ling Li, Hie-Won Hann, Shaogui Wan, Richard S Hann, Chun Wang, Yinzhi Lai, Xishan Ye, Alison Evans, Ronald E Myers, Zhong Ye,[...]. Sci Rep 2016
50
18

Mitochondria in innate immune responses.
A Phillip West, Gerald S Shadel, Sankar Ghosh. Nat Rev Immunol 2011
757
10

Increased plasma levels of circulating cell-free mitochondrial DNA in suicide attempters: associations with HPA-axis hyperactivity.
D Lindqvist, J Fernström, C Grudet, L Ljunggren, L Träskman-Bendz, L Ohlsson, Å Westrin. Transl Psychiatry 2016
51
17

Mitochondrial DNA and Toll-Like Receptor-9 Are Associated With Mortality in Critically Ill Patients.
Konstantin A Krychtiuk, Sarah Ruhittel, Philipp J Hohensinner, Lorenz Koller, Christoph Kaun, Max Lenz, Benedikt Bauer, Lisa Wutzlhofer, Dominik F Draxler, Gerald Maurer,[...]. Crit Care Med 2015
42
19

Platelets release mitochondria serving as substrate for bactericidal group IIA-secreted phospholipase A2 to promote inflammation.
Luc H Boudreau, Anne-Claire Duchez, Nathalie Cloutier, Denis Soulet, Nicolas Martin, James Bollinger, Alexandre Paré, Matthieu Rousseau, Gajendra S Naika, Tania Lévesque,[...]. Blood 2014
310
9

Mitochondrial DNA in the regulation of innate immune responses.
Chunju Fang, Xiawei Wei, Yuquan Wei. Protein Cell 2016
88
9

Plasma mitochondrial DNA concentrations after trauma.
Nicole Y L Lam, Timothy H Rainer, Rossa W K Chiu, Gavin M Joynt, Y M Dennis Lo. Clin Chem 2004
67
11

Packaging and transfer of mitochondrial DNA via exosomes regulate escape from dormancy in hormonal therapy-resistant breast cancer.
Pasquale Sansone, Claudia Savini, Ivana Kurelac, Qing Chang, Laura Benedetta Amato, Antonio Strillacci, Anna Stepanova, Luisa Iommarini, Chiara Mastroleo, Laura Daly,[...]. Proc Natl Acad Sci U S A 2017
290
9

Premature ageing in mice expressing defective mitochondrial DNA polymerase.
Aleksandra Trifunovic, Anna Wredenberg, Maria Falkenberg, Johannes N Spelbrink, Anja T Rovio, Carl E Bruder, Mohammad Bohlooly-Y, Sebastian Gidlöf, Anders Oldfors, Rolf Wibom,[...]. Nature 2004
8

Cationic nanocarriers induce cell necrosis through impairment of Na(+)/K(+)-ATPase and cause subsequent inflammatory response.
Xiawei Wei, Bin Shao, Zhiyao He, Tinghong Ye, Min Luo, Yaxiong Sang, Xiao Liang, Wei Wang, Shuntao Luo, Shengyong Yang,[...]. Cell Res 2015
127
8

A role for mitochondria in NLRP3 inflammasome activation.
Rongbin Zhou, Amir S Yazdi, Philippe Menu, Jürg Tschopp. Nature 2011
8

Astrocytes and Glioblastoma cells release exosomes carrying mtDNA.
Michele Guescini, Susanna Genedani, Vilberto Stocchi, Luigi Francesco Agnati. J Neural Transm (Vienna) 2010
402
8

Cell-free DNA release under psychosocial and physical stress conditions.
E M Hummel, E Hessas, S Müller, T Beiter, M Fisch, A Eibl, O T Wolf, B Giebel, P Platen, R Kumsta,[...]. Transl Psychiatry 2018
55
12

Acute psychological stress increases serum circulating cell-free mitochondrial DNA.
Caroline Trumpff, Anna L Marsland, Carla Basualto-Alarcón, James L Martin, Judith E Carroll, Gabriel Sturm, Amy E Vincent, Eugene V Mosharov, Zhenglong Gu, Brett A Kaufman,[...]. Psychoneuroendocrinology 2019
36
19


Sterile inflammation: sensing and reacting to damage.
Grace Y Chen, Gabriel Nuñez. Nat Rev Immunol 2010
6

Mitochondria in the regulation of innate and adaptive immunity.
Samuel E Weinberg, Laura A Sena, Navdeep S Chandel. Immunity 2015
445
6

Extracellular mitochondrial DNA and oxidatively damaged DNA in synovial fluid of patients with rheumatoid arthritis.
Shahin Hajizadeh, Jeroen DeGroot, Johan M TeKoppele, Andrej Tarkowski, L Vincent Collins. Arthritis Res Ther 2003
115
6

Pattern recognition receptors and inflammation.
Osamu Takeuchi, Shizuo Akira. Cell 2010
6

DNA fragments in the blood plasma of cancer patients: quantitations and evidence for their origin from apoptotic and necrotic cells.
S Jahr, H Hentze, S Englisch, D Hardt, F O Fackelmayer, R D Hesch, R Knippers. Cancer Res 2001
6

Cell-free nucleic acids as biomarkers in cancer patients.
Heidi Schwarzenbach, Dave S B Hoon, Klaus Pantel. Nat Rev Cancer 2011
6

Repeated bouts of exhaustive exercise increase circulating cell free nuclear and mitochondrial DNA without development of tolerance in healthy men.
Robert Stawski, Konrad Walczak, Piotr Kosielski, Pawel Meissner, Tomasz Budlewski, Gianluca Padula, Dariusz Nowak. PLoS One 2017
32
18


BAK/BAX macropores facilitate mitochondrial herniation and mtDNA efflux during apoptosis.
Kate McArthur, Lachlan W Whitehead, John M Heddleston, Lucy Li, Benjamin S Padman, Viola Oorschot, Niall D Geoghegan, Stephane Chappaz, Sophia Davidson, Hui San Chin,[...]. Science 2018
291
6

Mitochondrial DNA: An Endogenous Trigger for Immune Paralysis.
Simon T Schäfer, Lars Franken, Michael Adamzik, Beatrix Schumak, André Scherag, Andrea Engler, Niels Schönborn, Jennifer Walden, Susanne Koch, Hideo A Baba,[...]. Anesthesiology 2016
45
11

Gut mucosal DAMPs in IBD: from mechanisms to therapeutic implications.
R K Boyapati, A G Rossi, J Satsangi, G-T Ho. Mucosal Immunol 2016
66
7


Significance of Serum mtDNA Concentration in Lung Injury Induced by Hip Fracture.
Li Gan, Xiaobin Chen, Tiansheng Sun, Qi Li, Ruhui Zhang, Jianzheng Zhang, Jianfeng Zhong. Shock 2015
29
17


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.