A citation-based method for searching scientific literature

Xueyin Wang, Karen J Goodrich, Anne R Gooding, Haroon Naeem, Stuart Archer, Richard D Paucek, Daniel T Youmans, Thomas R Cech, Chen Davidovich. Mol Cell 2017
Times Cited: 99







List of co-cited articles
1478 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Promiscuous RNA binding by Polycomb repressive complex 2.
Chen Davidovich, Leon Zheng, Karen J Goodrich, Thomas R Cech. Nat Struct Mol Biol 2013
305
45

Regulatory interactions between RNA and polycomb repressive complex 2.
Catherine Cifuentes-Rojas, Alfredo J Hernandez, Kavitha Sarma, Jeannie T Lee. Mol Cell 2014
185
35

The interaction of PRC2 with RNA or chromatin is mutually antagonistic.
Manuel Beltran, Christopher M Yates, Lenka Skalska, Marcus Dawson, Filipa P Reis, Keijo Viiri, Cynthia L Fisher, Christopher R Sibley, Benjamin M Foster, Till Bartke,[...]. Genome Res 2016
114
35

Toward a consensus on the binding specificity and promiscuity of PRC2 for RNA.
Chen Davidovich, Xueyin Wang, Catherine Cifuentes-Rojas, Karen J Goodrich, Anne R Gooding, Jeannie T Lee, Thomas R Cech. Mol Cell 2015
140
31

Nascent RNA interaction keeps PRC2 activity poised and in check.
Syuzo Kaneko, Jinsook Son, Roberto Bonasio, Steven S Shen, Danny Reinberg. Genes Dev 2014
119
30

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs.
John L Rinn, Michael Kertesz, Jordon K Wang, Sharon L Squazzo, Xiao Xu, Samantha A Brugmann, L Henry Goodnough, Jill A Helms, Peggy J Farnham, Eran Segal,[...]. Cell 2007
27

PRC2 binds active promoters and contacts nascent RNAs in embryonic stem cells.
Syuzo Kaneko, Jinsook Son, Steven S Shen, Danny Reinberg, Roberto Bonasio. Nat Struct Mol Biol 2013
206
27

Molecular analysis of PRC2 recruitment to DNA in chromatin and its inhibition by RNA.
Xueyin Wang, Richard D Paucek, Anne R Gooding, Zachary Z Brown, Eva J Ge, Tom W Muir, Thomas R Cech. Nat Struct Mol Biol 2017
115
27

Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome.
Jing Zhao, Bryan K Sun, Jennifer A Erwin, Ji-Joon Song, Jeannie T Lee. Science 2008
24

Conserved RNA-binding specificity of polycomb repressive complex 2 is achieved by dispersed amino acid patches in EZH2.
Yicheng Long, Ben Bolanos, Lihu Gong, Wei Liu, Karen J Goodrich, Xin Yang, Siming Chen, Anne R Gooding, Karen A Maegley, Ketan S Gajiwala,[...]. Elife 2017
51
47

The Polycomb complex PRC2 and its mark in life.
Raphaël Margueron, Danny Reinberg. Nature 2011
23


Long noncoding RNA as modular scaffold of histone modification complexes.
Miao-Chih Tsai, Ohad Manor, Yue Wan, Nima Mosammaparast, Jordon K Wang, Fei Lan, Yang Shi, Eran Segal, Howard Y Chang. Science 2010
22

Genome-wide identification of polycomb-associated RNAs by RIP-seq.
Jing Zhao, Toshiro K Ohsumi, Johnny T Kung, Yuya Ogawa, Daniel J Grau, Kavitha Sarma, Ji Joon Song, Robert E Kingston, Mark Borowsky, Jeannie T Lee. Mol Cell 2010
697
21

Interactions between JARID2 and noncoding RNAs regulate PRC2 recruitment to chromatin.
Syuzo Kaneko, Roberto Bonasio, Ricardo Saldaña-Meyer, Takahaki Yoshida, Jinsook Son, Koichiro Nishino, Akihiro Umezawa, Danny Reinberg. Mol Cell 2014
245
19

RNA exploits an exposed regulatory site to inhibit the enzymatic activity of PRC2.
Qi Zhang, Nicholas J McKenzie, Robert Warneford-Thomson, Emma H Gail, Sarena F Flanigan, Brady M Owen, Richard Lauman, Vitalina Levina, Benjamin A Garcia, Ralf B Schittenhelm,[...]. Nat Struct Mol Biol 2019
54
35

Gene silencing triggers polycomb repressive complex 2 recruitment to CpG islands genome wide.
Eva Madi Riising, Itys Comet, Benjamin Leblanc, Xudong Wu, Jens Vilstrup Johansen, Kristian Helin. Mol Cell 2014
253
18

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression.
Ahmad M Khalil, Mitchell Guttman, Maite Huarte, Manuel Garber, Arjun Raj, Dianali Rivea Morales, Kelly Thomas, Aviva Presser, Bradley E Bernstein, Alexander van Oudenaarden,[...]. Proc Natl Acad Sci U S A 2009
17

Role of the polycomb protein EED in the propagation of repressive histone marks.
Raphael Margueron, Neil Justin, Katsuhito Ohno, Miriam L Sharpe, Jinsook Son, William J Drury, Philipp Voigt, Stephen R Martin, William R Taylor, Valeria De Marco,[...]. Nature 2009
735
17

Structural basis of oncogenic histone H3K27M inhibition of human polycomb repressive complex 2.
Neil Justin, Ying Zhang, Cataldo Tarricone, Stephen R Martin, Shuyang Chen, Elizabeth Underwood, Valeria De Marco, Lesley F Haire, Philip A Walker, Danny Reinberg,[...]. Nat Commun 2016
205
17

G-tract RNA removes Polycomb repressive complex 2 from genes.
Manuel Beltran, Manuel Tavares, Neil Justin, Garima Khandelwal, John Ambrose, Benjamin M Foster, Kaylee B Worlock, Andrey Tvardovskiy, Simone Kunzelmann, Javier Herrero,[...]. Nat Struct Mol Biol 2019
36
44

Genome regulation by long noncoding RNAs.
John L Rinn, Howard Y Chang. Annu Rev Biochem 2012
15

Short RNAs are transcribed from repressed polycomb target genes and interact with polycomb repressive complex-2.
Aditi Kanhere, Keijo Viiri, Carla C Araújo, Jane Rasaiyaah, Russell D Bouwman, Warren A Whyte, C Filipe Pereira, Emily Brookes, Kimberly Walker, George W Bell,[...]. Mol Cell 2010
283
14

Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis.
Rajnish A Gupta, Nilay Shah, Kevin C Wang, Jeewon Kim, Hugo M Horlings, David J Wong, Miao-Chih Tsai, Tiffany Hung, Pedram Argani, John L Rinn,[...]. Nature 2010
14


PRC2 is dispensable for HOTAIR-mediated transcriptional repression.
Manuela Portoso, Roberta Ragazzini, Živa Brenčič, Arianna Moiani, Audrey Michaud, Ivaylo Vassilev, Michel Wassef, Nicolas Servant, Bruno Sargueil, Raphaël Margueron. EMBO J 2017
110
13

The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3.
Colleen A McHugh, Chun-Kan Chen, Amy Chow, Christine F Surka, Christina Tran, Patrick McDonel, Amy Pandya-Jones, Mario Blanco, Christina Burghard, Annie Moradian,[...]. Nature 2015
623
13

Systematic discovery of Xist RNA binding proteins.
Ci Chu, Qiangfeng Cliff Zhang, Simão Teixeira da Rocha, Ryan A Flynn, Maheetha Bharadwaj, J Mauro Calabrese, Terry Magnuson, Edith Heard, Howard Y Chang. Cell 2015
573
13

Role of histone H3 lysine 27 methylation in Polycomb-group silencing.
Ru Cao, Liangjun Wang, Hengbin Wang, Li Xia, Hediye Erdjument-Bromage, Paul Tempst, Richard S Jones, Yi Zhang. Science 2002
13

Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation.
Radha Raman Pandey, Tanmoy Mondal, Faizaan Mohammad, Stefan Enroth, Lisa Redrup, Jan Komorowski, Takashi Nagano, Debora Mancini-Dinardo, Chandrasekhar Kanduri. Mol Cell 2008
831
13


Widespread RNA binding by chromatin-associated proteins.
David G Hendrickson, David R Kelley, Danielle Tenen, Bradley Bernstein, John L Rinn. Genome Biol 2016
130
12

Histone methyltransferase activity of a Drosophila Polycomb group repressor complex.
Jürg Müller, Craig M Hart, Nicole J Francis, Marcus L Vargas, Aditya Sengupta, Brigitte Wild, Ellen L Miller, Michael B O'Connor, Robert E Kingston, Jeffrey A Simon. Cell 2002
12

Histone methylation by PRC2 is inhibited by active chromatin marks.
Frank W Schmitges, Archana B Prusty, Mahamadou Faty, Alexandra Stützer, Gondichatnahalli M Lingaraju, Jonathan Aiwazian, Ragna Sack, Daniel Hess, Ling Li, Shaolian Zhou,[...]. Mol Cell 2011
428
12

Structures of human PRC2 with its cofactors AEBP2 and JARID2.
Vignesh Kasinath, Marco Faini, Simon Poepsel, Dvir Reif, Xinyu Ashlee Feng, Goran Stjepanovic, Ruedi Aebersold, Eva Nogales. Science 2018
92
13

Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions.
Ci Chu, Kun Qu, Franklin L Zhong, Steven E Artandi, Howard Y Chang. Mol Cell 2011
795
11

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.
Thomas Derrien, Rory Johnson, Giovanni Bussotti, Andrea Tanzer, Sarah Djebali, Hagen Tilgner, Gregory Guernec, David Martin, Angelika Merkel, David G Knowles,[...]. Genome Res 2012
11

Functional characterization of the TERRA transcriptome at damaged telomeres.
Antonio Porro, Sascha Feuerhahn, Julien Delafontaine, Harold Riethman, Jacques Rougemont, Joachim Lingner. Nat Commun 2014
139
10

Mouse polycomb proteins bind differentially to methylated histone H3 and RNA and are enriched in facultative heterochromatin.
Emily Bernstein, Elizabeth M Duncan, Osamu Masui, Jesus Gil, Edith Heard, C David Allis. Mol Cell Biol 2006
363
10

Histone H2A monoubiquitination promotes histone H3 methylation in Polycomb repression.
Reinhard Kalb, Sebastian Latwiel, H Irem Baymaz, Pascal W T C Jansen, Christoph W Müller, Michiel Vermeulen, Jürg Müller. Nat Struct Mol Biol 2014
247
10

Jarid2 Methylation via the PRC2 Complex Regulates H3K27me3 Deposition during Cell Differentiation.
Serena Sanulli, Neil Justin, Aurélie Teissandier, Katia Ancelin, Manuela Portoso, Matthieu Caron, Audrey Michaud, Berangère Lombard, Simao T da Rocha, John Offer,[...]. Mol Cell 2015
146
10

Role of histone H3 lysine 27 methylation in X inactivation.
Kathrin Plath, Jia Fang, Susanna K Mlynarczyk-Evans, Ru Cao, Kathleen A Worringer, Hengbin Wang, Cecile C de la Cruz, Arie P Otte, Barbara Panning, Yi Zhang. Science 2003
849
10

TERRA RNA Antagonizes ATRX and Protects Telomeres.
Hsueh-Ping Chu, Catherine Cifuentes-Rojas, Barry Kesner, Eric Aeby, Hun-Goo Lee, Chunyao Wei, Hyun Jung Oh, Myriam Boukhali, Wilhelm Haas, Jeannie T Lee. Cell 2017
109
10

Genome Regulation by Polycomb and Trithorax: 70 Years and Counting.
Bernd Schuettengruber, Henri-Marc Bourbon, Luciano Di Croce, Giacomo Cavalli. Cell 2017
374
10

Polycomb-like proteins link the PRC2 complex to CpG islands.
Haojie Li, Robert Liefke, Junyi Jiang, Jesse Vigoda Kurland, Wei Tian, Pujuan Deng, Weidi Zhang, Qian He, Dinshaw J Patel, Martha L Bulyk,[...]. Nature 2017
132
10

TERRA RNA binding to TRF2 facilitates heterochromatin formation and ORC recruitment at telomeres.
Zhong Deng, Julie Norseen, Andreas Wiedmer, Harold Riethman, Paul M Lieberman. Mol Cell 2009
355
10

High-throughput sequencing of DNA G-quadruplex structures in the human genome.
Vicki S Chambers, Giovanni Marsico, Jonathan M Boutell, Marco Di Antonio, Geoffrey P Smith, Shankar Balasubramanian. Nat Biotechnol 2015
537
10

HOTAIR forms an intricate and modular secondary structure.
Srinivas Somarowthu, Michal Legiewicz, Isabel Chillón, Marco Marcia, Fei Liu, Anna Marie Pyle. Mol Cell 2015
180
10

A crystallographic and modelling study of a human telomeric RNA (TERRA) quadruplex.
Gavin W Collie, Shozeb M Haider, Stephen Neidle, Gary N Parkinson. Nucleic Acids Res 2010
152
10

TERRA recruitment of polycomb to telomeres is essential for histone trymethylation marks at telomeric heterochromatin.
Juan J Montero, Isabel López-Silanes, Diego Megías, Mario F Fraga, Álvaro Castells-García, Maria A Blasco. Nat Commun 2018
56
17


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.