A citation-based method for searching scientific literature

Ling Zhang, Jingmin Wang, Cheng Zhang, Dongxiao Li, Claudia M B Carvalho, Haoran Ji, Jianqiu Xiao, Ye Wu, Weichen Zhou, Hongyan Wang, Li Jin, Yang Luo, Xiru Wu, James R Lupski, Feng Zhang, Yuwu Jiang. Hum Mol Genet 2017
Times Cited: 11







List of co-cited articles
31 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Mechanisms underlying structural variant formation in genomic disorders.
Claudia M B Carvalho, James R Lupski. Nat Rev Genet 2016
276
54

Complex genomic rearrangements at the PLP1 locus include triplication and quadruplication.
Christine R Beck, Claudia M B Carvalho, Linda Banser, Tomasz Gambin, Danielle Stubbolo, Bo Yuan, Karen Sperle, Suzanne M McCahan, Marco Henneke, Pavel Seeman,[...]. PLoS Genet 2015
41
36


Heterogeneous duplications in patients with Pelizaeus-Merzbacher disease suggest a mechanism of coupled homologous and nonhomologous recombination.
Karen J Woodward, Maria Cundall, Karen Sperle, Erik A Sistermans, Mark Ross, Gareth Howell, Susan M Gribble, Deborah C Burford, Nigel P Carter, Donald L Hobson,[...]. Am J Hum Genet 2005
82
36

Complex rearrangements in patients with duplications of MECP2 can occur by fork stalling and template switching.
Claudia M B Carvalho, Feng Zhang, Pengfei Liu, Ankita Patel, Trilochan Sahoo, Carlos A Bacino, Chad Shaw, Sandra Peacock, Amber Pursley, Y Jane Tavyev,[...]. Hum Mol Genet 2009
142
27

Inverted genomic segments and complex triplication rearrangements are mediated by inverted repeats in the human genome.
Claudia M B Carvalho, Melissa B Ramocki, Davut Pehlivan, Luis M Franco, Claudia Gonzaga-Jauregui, Ping Fang, Alanna McCall, Eniko Karman Pivnick, Stacy Hines-Dowell, Laurie H Seaver,[...]. Nat Genet 2011
128
27

Predicting human genes susceptible to genomic instability associated with Alu/Alu-mediated rearrangements.
Xiaofei Song, Christine R Beck, Renqian Du, Ian M Campbell, Zeynep Coban-Akdemir, Shen Gu, Amy M Breman, Pawel Stankiewicz, Grzegorz Ira, Chad A Shaw,[...]. Genome Res 2018
35
27

Alu-mediated diverse and complex pathogenic copy-number variants within human chromosome 17 at p13.3.
Shen Gu, Bo Yuan, Ian M Campbell, Christine R Beck, Claudia M B Carvalho, Sandesh C S Nagamani, Ayelet Erez, Ankita Patel, Carlos A Bacino, Chad A Shaw,[...]. Hum Mol Genet 2015
55
27


The DNA replication FoSTeS/MMBIR mechanism can generate genomic, genic and exonic complex rearrangements in humans.
Feng Zhang, Mehrdad Khajavi, Anne M Connolly, Charles F Towne, Sat Dev Batish, James R Lupski. Nat Genet 2009
300
18

Translesion Polymerases Drive Microhomology-Mediated Break-Induced Replication Leading to Complex Chromosomal Rearrangements.
Cynthia J Sakofsky, Sandeep Ayyar, Angela K Deem, Woo-Hyun Chung, Grzegorz Ira, Anna Malkova. Mol Cell 2015
69
18

Translocation and deletion breakpoints in cancer genomes are associated with potential non-B DNA-forming sequences.
Albino Bacolla, John A Tainer, Karen M Vasquez, David N Cooper. Nucleic Acids Res 2016
67
18

Decoding NF1 Intragenic Copy-Number Variations.
Meng-Chang Hsiao, Arkadiusz Piotrowski, Tom Callens, Chuanhua Fu, Katharina Wimmer, Kathleen B M Claes, Ludwine Messiaen. Am J Hum Genet 2015
14
18

Copy number variation in human health, disease, and evolution.
Feng Zhang, Wenli Gu, Matthew E Hurles, James R Lupski. Annu Rev Genomics Hum Genet 2009
701
18

The role of microhomology in genomic structural variation.
Diego Ottaviani, Magdalena LeCain, Denise Sheer. Trends Genet 2014
97
18

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.
Sue Richards, Nazneen Aziz, Sherri Bale, David Bick, Soma Das, Julie Gastier-Foster, Wayne W Grody, Madhuri Hegde, Elaine Lyon, Elaine Spector,[...]. Genet Med 2015
18


Analysis of protein-coding genetic variation in 60,706 humans.
Monkol Lek, Konrad J Karczewski, Eric V Minikel, Kaitlin E Samocha, Eric Banks, Timothy Fennell, Anne H O'Donnell-Luria, James S Ware, Andrew J Hill, Beryl B Cummings,[...]. Nature 2016
18

An Organismal CNV Mutator Phenotype Restricted to Early Human Development.
Pengfei Liu, Bo Yuan, Claudia M B Carvalho, Arthur Wuster, Klaudia Walter, Ling Zhang, Tomasz Gambin, Zechen Chong, Ian M Campbell, Zeynep Coban Akdemir,[...]. Cell 2017
43
18

Role of genomic architecture in PLP1 duplication causing Pelizaeus-Merzbacher disease.
Jennifer A Lee, Ken Inoue, Sau W Cheung, Chad A Shaw, Pawel Stankiewicz, James R Lupski. Hum Mol Genet 2006
61
18


Inverted low-copy repeats and genome instability--a genome-wide analysis.
Piotr Dittwald, Tomasz Gambin, Claudia Gonzaga-Jauregui, Claudia M B Carvalho, James R Lupski, Paweł Stankiewicz, Anna Gambin. Hum Mutat 2013
39
18

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
18

Megabase Length Hypermutation Accompanies Human Structural Variation at 17p11.2.
Christine R Beck, Claudia M B Carvalho, Zeynep C Akdemir, Fritz J Sedlazeck, Xiaofei Song, Qingchang Meng, Jianhong Hu, Harsha Doddapaneni, Zechen Chong, Edward S Chen,[...]. Cell 2019
30
18


Duplication of the proteolipid protein gene is the major cause of Pelizaeus-Merzbacher disease.
E A Sistermans, R F de Coo, I J De Wijs, B A Van Oost. Neurology 1998
110
18

Chromosome catastrophes involve replication mechanisms generating complex genomic rearrangements.
Pengfei Liu, Ayelet Erez, Sandesh C Sreenath Nagamani, Shweta U Dhar, Katarzyna E Kołodziejska, Avinash V Dharmadhikari, M Lance Cooper, Joanna Wiszniewska, Feng Zhang, Marjorie A Withers,[...]. Cell 2011
286
18

Mechanisms for Complex Chromosomal Insertions.
Shen Gu, Przemyslaw Szafranski, Zeynep Coban Akdemir, Bo Yuan, Mitchell L Cooper, Maria A Magriñá, Carlos A Bacino, Seema R Lalani, Amy M Breman, Janice L Smith,[...]. PLoS Genet 2016
30
18


Mechanisms for recurrent and complex human genomic rearrangements.
Pengfei Liu, Claudia M B Carvalho, P J Hastings, James R Lupski. Curr Opin Genet Dev 2012
216
18

Chromosome segregation errors generate a diverse spectrum of simple and complex genomic rearrangements.
Peter Ly, Simon F Brunner, Ofer Shoshani, Dong Hyun Kim, Weijie Lan, Tatyana Pyntikova, Adrienne M Flanagan, Sam Behjati, David C Page, Peter J Campbell,[...]. Nat Genet 2019
60
18

Detection of active transposable elements in Arabidopsis thaliana using Oxford Nanopore Sequencing technology.
Emilie Debladis, Christel Llauro, Marie-Christine Carpentier, Marie Mirouze, Olivier Panaud. BMC Genomics 2017
24
9


The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community.
Miten Jain, Hugh E Olsen, Benedict Paten, Mark Akeson. Genome Biol 2016
426
9


Trinucleotide repeat disorders.
Harry T Orr, Huda Y Zoghbi. Annu Rev Neurosci 2007
972
9

Role of recombination and replication fork restart in repeat instability.
Erica J Polleys, Nealia C M House, Catherine H Freudenreich. DNA Repair (Amst) 2017
29
9

Contrasting evolutionary genome dynamics between domesticated and wild yeasts.
Jia-Xing Yue, Jing Li, Louise Aigrain, Johan Hallin, Karl Persson, Karen Oliver, Anders Bergström, Paul Coupland, Jonas Warringer, Marco Cosentino Lagomarsino,[...]. Nat Genet 2017
129
9

Precarious maintenance of simple DNA repeats in eukaryotes.
Alexander J Neil, Jane C Kim, Sergei M Mirkin. Bioessays 2017
26
9

Mechanisms and Consequences of Cancer Genome Instability: Lessons from Genome Sequencing Studies.
June-Koo Lee, Yoon-La Choi, Mijung Kwon, Peter J Park. Annu Rev Pathol 2016
66
9

de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer.
Benjamin Istace, Anne Friedrich, Léo d'Agata, Sébastien Faye, Emilie Payen, Odette Beluche, Claudia Caradec, Sabrina Davidas, Corinne Cruaud, Gianni Liti,[...]. Gigascience 2017
85
9

Interrogating the "unsequenceable" genomic trinucleotide repeat disorders by long-read sequencing.
Qian Liu, Peng Zhang, Depeng Wang, Weihong Gu, Kai Wang. Genome Med 2017
35
9

Repeat instability during DNA repair: Insights from model systems.
Karen Usdin, Nealia C M House, Catherine H Freudenreich. Crit Rev Biochem Mol Biol 2015
101
9

Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast.
Daniel C Jeffares, Clemency Jolly, Mimoza Hoti, Doug Speed, Liam Shaw, Charalampos Rallis, Francois Balloux, Christophe Dessimoz, Jürg Bähler, Fritz J Sedlazeck. Nat Commun 2017
134
9

Repeat instability: mechanisms of dynamic mutations.
Christopher E Pearson, Kerrie Nichol Edamura, John D Cleary. Nat Rev Genet 2005
608
9

The molecular basis of Friedreich ataxia.
Massimo Pandolfo. Adv Exp Med Biol 2002
41
9

Large-scale expansions of Friedreich's ataxia GAA repeats in yeast.
Alexander A Shishkin, Irina Voineagu, Robert Matera, Nicole Cherng, Brook T Chernet, Maria M Krasilnikova, Vidhya Narayanan, Kirill S Lobachev, Sergei M Mirkin. Mol Cell 2009
99
9

Characterization of Potocki-Lupski syndrome (dup(17)(p11.2p11.2)) and delineation of a dosage-sensitive critical interval that can convey an autism phenotype.
Lorraine Potocki, Weimin Bi, Diane Treadwell-Deering, Claudia M B Carvalho, Anna Eifert, Ellen M Friedman, Daniel Glaze, Kevin Krull, Jennifer A Lee, Richard Alan Lewis,[...]. Am J Hum Genet 2007
254
9

Sequencing Structural Variants in Cancer for Precision Therapeutics.
Geoff Macintyre, Bauke Ylstra, James D Brenton. Trends Genet 2016
36
9

Role of DNA polymerases in repeat-mediated genome instability.
Kartik A Shah, Alexander A Shishkin, Irina Voineagu, Youri I Pavlov, Polina V Shcherbakova, Sergei M Mirkin. Cell Rep 2012
45
9


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.