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Times Cited: 564
Times Cited: 564
Times Cited
Times Co-cited
Similarity
Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments.
Neva C Durand, Muhammad S Shamim, Ido Machol, Suhas S P Rao, Miriam H Huntley, Eric S Lander, Erez Lieberman Aiden. Cell Syst 2016
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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.
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Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.
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The Sequence Alignment/Map format and SAMtools.
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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.
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Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation.
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Trimmomatic: a flexible trimmer for Illumina sequence data.
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Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments.
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Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom.
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OrthoFinder: phylogenetic orthology inference for comparative genomics.
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GenomeScope: fast reference-free genome profiling from short reads.
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The variant call format and VCFtools.
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Basic local alignment search tool.
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AUGUSTUS: ab initio prediction of alternative transcripts.
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Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
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InterProScan 5: genome-scale protein function classification.
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BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics.
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A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
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HiC-Pro: an optimized and flexible pipeline for Hi-C data processing.
Nicolas Servant, Nelle Varoquaux, Bryan R Lajoie, Eric Viara, Chong-Jian Chen, Jean-Philippe Vert, Edith Heard, Job Dekker, Emmanuel Barillot. Genome Biol 2015
Nicolas Servant, Nelle Varoquaux, Bryan R Lajoie, Eric Viara, Chong-Jian Chen, Jean-Philippe Vert, Edith Heard, Job Dekker, Emmanuel Barillot. Genome Biol 2015
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Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype.
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IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.
Lam-Tung Nguyen, Heiko A Schmidt, Arndt von Haeseler, Bui Quang Minh. Mol Biol Evol 2015
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GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes.
T Rhyker Ranallo-Benavidez, Kamil S Jaron, Michael C Schatz. Nat Commun 2020
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Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.