A citation-based method for searching scientific literature

Paul Geeleher, R Stephanie Huang. Cancer Discov 2017
Times Cited: 5







List of co-cited articles
14 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Interaction Landscape of Inherited Polymorphisms with Somatic Events in Cancer.
Hannah Carter, Rachel Marty, Matan Hofree, Andrew M Gross, James Jensen, Kathleen M Fisch, Xingyu Wu, Christopher DeBoever, Eric L Van Nostrand, Yan Song,[...]. Cancer Discov 2017
63
40

A reference panel of 64,976 haplotypes for genotype imputation.
Shane McCarthy, Sayantan Das, Warren Kretzschmar, Olivier Delaneau, Andrew R Wood, Alexander Teumer, Hyun Min Kang, Christian Fuchsberger, Petr Danecek, Kevin Sharp,[...]. Nat Genet 2016
888
40

Gene regulatory mechanisms underpinning prostate cancer susceptibility.
Thomas Whitington, Ping Gao, Wei Song, Helen Ross-Adams, Alastair D Lamb, Yuehong Yang, Ilaria Svezia, Daniel Klevebring, Ian G Mills, Robert Karlsson,[...]. Nat Genet 2016
54
40

An Expanded View of Complex Traits: From Polygenic to Omnigenic.
Evan A Boyle, Yang I Li, Jonathan K Pritchard. Cell 2017
882
40

The hallmarks of cancer.
D Hanahan, R A Weinberg. Cell 2000
40

Comprehensive functional annotation of 77 prostate cancer risk loci.
Dennis J Hazelett, Suhn Kyong Rhie, Malaina Gaddis, Chunli Yan, Daniel L Lakeland, Simon G Coetzee, Brian E Henderson, Houtan Noushmehr, Wendy Cozen, Zsofia Kote-Jarai,[...]. PLoS Genet 2014
114
40

A Review of Prostate Cancer Genome-Wide Association Studies (GWAS).
Sarah Benafif, Zsofia Kote-Jarai, Rosalind A Eeles. Cancer Epidemiol Biomarkers Prev 2018
37
40

CAUSEL: an epigenome- and genome-editing pipeline for establishing function of noncoding GWAS variants.
Sándor Spisák, Kate Lawrenson, Yanfang Fu, István Csabai, Rebecca T Cottman, Ji-Heui Seo, Christopher Haiman, Ying Han, Romina Lenci, Qiyuan Li,[...]. Nat Med 2015
53
40

Prostate cancer screening in men aged 50-69 years (STHLM3): a prospective population-based diagnostic study.
Henrik Grönberg, Jan Adolfsson, Markus Aly, Tobias Nordström, Peter Wiklund, Yvonne Brandberg, James Thompson, Fredrik Wiklund, Johan Lindberg, Mark Clements,[...]. Lancet Oncol 2015
171
40

Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.
Fredrick R Schumacher, Ali Amin Al Olama, Sonja I Berndt, Sara Benlloch, Mahbubl Ahmed, Edward J Saunders, Tokhir Dadaev, Daniel Leongamornlert, Ezequiel Anokian, Clara Cieza-Borrella,[...]. Nat Genet 2018
200
40

Potential impact of adding genetic markers to clinical parameters in predicting prostate biopsy outcomes in men following an initial negative biopsy: findings from the REDUCE trial.
A Karim Kader, Jielin Sun, Brian H Reck, Paul J Newcombe, Seong-Tae Kim, Fang-Chi Hsu, Ralph B D'Agostino, Sha Tao, Zheng Zhang, Aubrey R Turner,[...]. Eur Urol 2012
69
40

Post genome-wide association studies functional characterization of prostate cancer risk loci.
Junfeng Jiang, Weirong Cui, Wanwipa Vongsangnak, Guang Hu, Bairong Shen. BMC Genomics 2013
15
40

Familial Risk and Heritability of Cancer Among Twins in Nordic Countries.
Lorelei A Mucci, Jacob B Hjelmborg, Jennifer R Harris, Kamila Czene, David J Havelick, Thomas Scheike, Rebecca E Graff, Klaus Holst, Sören Möller, Robert H Unger,[...]. JAMA 2016
267
40

Mutation and cancer: statistical study of retinoblastoma.
A G Knudson. Proc Natl Acad Sci U S A 1971
40

Integrative eQTL-based analyses reveal the biology of breast cancer risk loci.
Qiyuan Li, Ji-Heui Seo, Barbara Stranger, Aaron McKenna, Itsik Pe'er, Thomas Laframboise, Myles Brown, Svitlana Tyekucheva, Matthew L Freedman. Cell 2013
214
20

Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
Kyriaki Michailidou, Jonathan Beesley, Sara Lindstrom, Sander Canisius, Joe Dennis, Michael J Lush, Mel J Maranian, Manjeet K Bolla, Qin Wang, Mitul Shah,[...]. Nat Genet 2015
315
20

Gene ontology analysis for RNA-seq: accounting for selection bias.
Matthew D Young, Matthew J Wakefield, Gordon K Smyth, Alicia Oshlack. Genome Biol 2010
20

Discovering novel pharmacogenomic biomarkers by imputing drug response in cancer patients from large genomics studies.
Paul Geeleher, Zhenyu Zhang, Fan Wang, Robert F Gruener, Aritro Nath, Gladys Morrison, Steven Bhutra, Robert L Grossman, R Stephanie Huang. Genome Res 2017
33
20

Epigenomic Deconvolution of Breast Tumors Reveals Metabolic Coupling between Constituent Cell Types.
Vitor Onuchic, Ryan J Hartmaier, David N Boone, Michael L Samuels, Ronak Y Patel, Wendy M White, Vesna D Garovic, Steffi Oesterreich, Matt E Roth, Adrian V Lee,[...]. Cell Rep 2016
38
20

Fast and accurate genotype imputation in genome-wide association studies through pre-phasing.
Bryan Howie, Christian Fuchsberger, Matthew Stephens, Jonathan Marchini, Gonçalo R Abecasis. Nat Genet 2012
20

Hallmarks of cancer: the next generation.
Douglas Hanahan, Robert A Weinberg. Cell 2011
20

Toward a Shared Vision for Cancer Genomic Data.
Robert L Grossman, Allison P Heath, Vincent Ferretti, Harold E Varmus, Douglas R Lowy, Warren A Kibbe, Louis M Staudt. N Engl J Med 2016
444
20

The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups.
Christina Curtis, Sohrab P Shah, Suet-Feung Chin, Gulisa Turashvili, Oscar M Rueda, Mark J Dunning, Doug Speed, Andy G Lynch, Shamith Samarajiwa, Yinyin Yuan,[...]. Nature 2012
20

Chemotherapeutic drug susceptibility associated SNPs are enriched in expression quantitative trait loci.
Eric R Gamazon, R Stephanie Huang, Nancy J Cox, M Eileen Dolan. Proc Natl Acad Sci U S A 2010
83
20

Genome-Wide Meta-Analyses of Breast, Ovarian, and Prostate Cancer Association Studies Identify Multiple New Susceptibility Loci Shared by at Least Two Cancer Types.
Siddhartha P Kar, Jonathan Beesley, Ali Amin Al Olama, Kyriaki Michailidou, Jonathan Tyrer, ZSofia Kote-Jarai, Kate Lawrenson, Sara Lindstrom, Susan J Ramus, Deborah J Thompson,[...]. Cancer Discov 2016
77
20

PLINK: a tool set for whole-genome association and population-based linkage analyses.
Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel A R Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I W de Bakker, Mark J Daly,[...]. Am J Hum Genet 2007
20

Genome-wide association analysis in East Asians identifies breast cancer susceptibility loci at 1q32.1, 5q14.3 and 15q26.1.
Qiuyin Cai, Ben Zhang, Hyuna Sung, Siew-Kee Low, Sun-Seog Kweon, Wei Lu, Jiajun Shi, Jirong Long, Wanqing Wen, Ji-Yeob Choi,[...]. Nat Genet 2014
96
20

Systematic pan-cancer analysis of tumour purity.
Dvir Aran, Marina Sirota, Atul J Butte. Nat Commun 2015
366
20


The Cancer Genome Atlas Pan-Cancer analysis project.
John N Weinstein, Eric A Collisson, Gordon B Mills, Kenna R Mills Shaw, Brad A Ozenberger, Kyle Ellrott, Ilya Shmulevich, Chris Sander, Joshua M Stuart. Nat Genet 2013
20


Single-cell RNA-seq enables comprehensive tumour and immune cell profiling in primary breast cancer.
Woosung Chung, Hye Hyeon Eum, Hae-Ock Lee, Kyung-Min Lee, Han-Byoel Lee, Kyu-Tae Kim, Han Suk Ryu, Sangmin Kim, Jeong Eon Lee, Yeon Hee Park,[...]. Nat Commun 2017
265
20

Next-generation genotype imputation service and methods.
Sayantan Das, Lukas Forer, Sebastian Schönherr, Carlo Sidore, Adam E Locke, Alan Kwong, Scott I Vrieze, Emily Y Chew, Shawn Levy, Matt McGue,[...]. Nat Genet 2016
798
20

The support of human genetic evidence for approved drug indications.
Matthew R Nelson, Hannah Tipney, Jeffery L Painter, Judong Shen, Paola Nicoletti, Yufeng Shen, Aris Floratos, Pak Chung Sham, Mulin Jun Li, Junwen Wang,[...]. Nat Genet 2015
461
20

A comprehensive transcriptional portrait of human cancer cell lines.
Christiaan Klijn, Steffen Durinck, Eric W Stawiski, Peter M Haverty, Zhaoshi Jiang, Hanbin Liu, Jeremiah Degenhardt, Oleg Mayba, Florian Gnad, Jinfeng Liu,[...]. Nat Biotechnol 2015
322
20

Genome-wide association studies of cancer.
Zsofia K Stadler, Peter Thom, Mark E Robson, Jeffrey N Weitzel, Noah D Kauff, Karen E Hurley, Vincent Devlin, Bert Gold, Robert J Klein, Kenneth Offit. J Clin Oncol 2010
104
20

Bionimbus: a cloud for managing, analyzing and sharing large genomics datasets.
Allison P Heath, Matthew Greenway, Raymond Powell, Jonathan Spring, Rafael Suarez, David Hanley, Chai Bandlamudi, Megan E McNerney, Kevin P White, Robert L Grossman. J Am Med Inform Assoc 2014
25
20

Single-cell sequencing reveals dissociation-induced gene expression in tissue subpopulations.
Susanne C van den Brink, Fanny Sage, Ábel Vértesy, Bastiaan Spanjaard, Josi Peterson-Maduro, Chloé S Baron, Catherine Robin, Alexander van Oudenaarden. Nat Methods 2017
254
20

Cis-eQTL-based trans-ethnic meta-analysis reveals novel genes associated with breast cancer risk.
Joshua D Hoffman, Rebecca E Graff, Nima C Emami, Caroline G Tai, Michael N Passarelli, Donglei Hu, Scott Huntsman, Dexter Hadley, Lancelote Leong, Arunabha Majumdar,[...]. PLoS Genet 2017
22
20

Targeting RAS signalling pathways in cancer therapy.
Julian Downward. Nat Rev Cancer 2003
20

Putative cis-regulatory drivers in colorectal cancer.
Halit Ongen, Claus L Andersen, Jesper B Bramsen, Bodil Oster, Mads H Rasmussen, Pedro G Ferreira, Juan Sandoval, Enrique Vidal, Nicola Whiffin, Alexandra Planchon,[...]. Nature 2014
99
20

Integrative analyses of genetic variation, epigenetic regulation, and the transcriptome to elucidate the biology of platinum sensitivity.
Bonnie LaCroix, Eric R Gamazon, Divya Lenkala, Hae Kyung Im, Paul Geeleher, Dana Ziliak, Nancy J Cox, Rong Stephanie Huang. BMC Genomics 2014
16
20


Cell Specific eQTL Analysis without Sorting Cells.
Harm-Jan Westra, Danny Arends, Tõnu Esko, Marjolein J Peters, Claudia Schurmann, Katharina Schramm, Johannes Kettunen, Hanieh Yaghootkar, Benjamin P Fairfax, Anand Kumar Andiappan,[...]. PLoS Genet 2015
58
20

COSMIC: somatic cancer genetics at high-resolution.
Simon A Forbes, David Beare, Harry Boutselakis, Sally Bamford, Nidhi Bindal, John Tate, Charlotte G Cole, Sari Ward, Elisabeth Dawson, Laura Ponting,[...]. Nucleic Acids Res 2017
20

Genome-wide association study identifies multiple susceptibility loci for glioma.
Ben Kinnersley, Marianne Labussière, Amy Holroyd, Anna-Luisa Di Stefano, Peter Broderick, Jayaram Vijayakrishnan, Karima Mokhtari, Jean-Yves Delattre, Konstantinos Gousias, Johannes Schramm,[...]. Nat Commun 2015
58
20


Expression and methylation patterns partition luminal-A breast tumors into distinct prognostic subgroups.
Dvir Netanely, Ayelet Avraham, Adit Ben-Baruch, Ella Evron, Ron Shamir. Breast Cancer Res 2016
30
20

Cell type-specific gene expression differences in complex tissues.
Shai S Shen-Orr, Robert Tibshirani, Purvesh Khatri, Dale L Bodian, Frank Staedtler, Nicholas M Perry, Trevor Hastie, Minnie M Sarwal, Mark M Davis, Atul J Butte. Nat Methods 2010
275
20

Expression Quantitative Trait loci (QTL) in tumor adjacent normal breast tissue and breast tumor tissue.
Alejandro Quiroz-Zárate, Benjamin J Harshfield, Rong Hu, Nick Knoblauch, Andrew H Beck, Susan E Hankinson, Vincent Carey, Rulla M Tamimi, David J Hunter, John Quackenbush,[...]. PLoS One 2017
5
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.