A citation-based method for searching scientific literature

Moritz Mall, Michael S Kareta, Soham Chanda, Henrik Ahlenius, Nicholas Perotti, Bo Zhou, Sarah D Grieder, Xuecai Ge, Sienna Drake, Cheen Euong Ang, Brandon M Walker, Thomas Vierbuchen, Daniel R Fuentes, Philip Brennecke, Kazuhiro R Nitta, Arttu Jolma, Lars M Steinmetz, Jussi Taipale, Thomas C Südhof, Marius Wernig. Nature 2017
Times Cited: 110







List of co-cited articles
862 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Direct conversion of fibroblasts to functional neurons by defined factors.
Thomas Vierbuchen, Austin Ostermeier, Zhiping P Pang, Yuko Kokubu, Thomas C Südhof, Marius Wernig. Nature 2010
45

Hierarchical mechanisms for direct reprogramming of fibroblasts to neurons.
Orly L Wapinski, Thomas Vierbuchen, Kun Qu, Qian Yi Lee, Soham Chanda, Daniel R Fuentes, Paul G Giresi, Yi Han Ng, Samuele Marro, Norma F Neff,[...]. Cell 2013
362
35

Induction of human neuronal cells by defined transcription factors.
Zhiping P Pang, Nan Yang, Thomas Vierbuchen, Austin Ostermeier, Daniel R Fuentes, Troy Q Yang, Ami Citri, Vittorio Sebastiano, Samuele Marro, Thomas C Südhof,[...]. Nature 2011
839
28

Dissecting direct reprogramming from fibroblast to neuron using single-cell RNA-seq.
Barbara Treutlein, Qian Yi Lee, J Gray Camp, Moritz Mall, Winston Koh, Seyed Ali Mohammad Shariati, Sopheak Sim, Norma F Neff, Jan M Skotheim, Marius Wernig,[...]. Nature 2016
239
27

Generation of induced neuronal cells by the single reprogramming factor ASCL1.
Soham Chanda, Cheen Euong Ang, Jonathan Davila, ChangHui Pak, Moritz Mall, Qian Yi Lee, Henrik Ahlenius, Seung Woo Jung, Thomas C Südhof, Marius Wernig. Stem Cell Reports 2014
217
23


Small Molecules Modulate Chromatin Accessibility to Promote NEUROG2-Mediated Fibroblast-to-Neuron Reprogramming.
Derek K Smith, Jianjing Yang, Meng-Lu Liu, Chun-Li Zhang. Stem Cell Reports 2016
62
29

Identification and Successful Negotiation of a Metabolic Checkpoint in Direct Neuronal Reprogramming.
Sergio Gascón, Elisa Murenu, Giacomo Masserdotti, Felipe Ortega, Gianluca L Russo, David Petrik, Aditi Deshpande, Christophe Heinrich, Marisa Karow, Stephen P Robertson,[...]. Cell Stem Cell 2016
194
17


Direct neuronal reprogramming: learning from and for development.
Giacomo Masserdotti, Sergio Gascón, Magdalena Götz. Development 2016
83
19

Directing astroglia from the cerebral cortex into subtype specific functional neurons.
Christophe Heinrich, Robert Blum, Sergio Gascón, Giacomo Masserdotti, Pratibha Tripathi, Rodrigo Sánchez, Steffen Tiedt, Timm Schroeder, Magdalena Götz, Benedikt Berninger. PLoS Biol 2010
313
16

Generation of induced neurons via direct conversion in vivo.
Olof Torper, Ulrich Pfisterer, Daniel A Wolf, Maria Pereira, Shong Lau, Johan Jakobsson, Anders Björklund, Shane Grealish, Malin Parmar. Proc Natl Acad Sci U S A 2013
273
16

Rapid Chromatin Switch in the Direct Reprogramming of Fibroblasts to Neurons.
Orly L Wapinski, Qian Yi Lee, Albert C Chen, Rui Li, M Ryan Corces, Cheen Euong Ang, Barbara Treutlein, Chaomei Xiang, Valérie Baubet, Fabian Patrik Suchy,[...]. Cell Rep 2017
69
23

Transcriptional Mechanisms of Proneural Factors and REST in Regulating Neuronal Reprogramming of Astrocytes.
Giacomo Masserdotti, Sébastien Gillotin, Bernd Sutor, Daniela Drechsel, Martin Irmler, Helle F Jørgensen, Steffen Sass, Fabian J Theis, Johannes Beckers, Benedikt Berninger,[...]. Cell Stem Cell 2015
111
15

Direct conversion of human fibroblasts to dopaminergic neurons.
Ulrich Pfisterer, Agnete Kirkeby, Olof Torper, James Wood, Jenny Nelander, Audrey Dufour, Anders Björklund, Olle Lindvall, Johan Jakobsson, Malin Parmar. Proc Natl Acad Sci U S A 2011
536
15

MyT1 Counteracts the Neural Progenitor Program to Promote Vertebrate Neurogenesis.
Francisca F Vasconcelos, Alessandro Sessa, Cátia Laranjeira, Alexandre A S F Raposo, Vera Teixeira, Daniel W Hagey, Diogo M Tomaz, Jonas Muhr, Vania Broccoli, Diogo S Castro. Cell Rep 2016
39
38

Small molecules enable neurogenin 2 to efficiently convert human fibroblasts into cholinergic neurons.
Meng-Lu Liu, Tong Zang, Yuhua Zou, Joshua C Chang, Jay R Gibson, Kimberly M Huber, Chun-Li Zhang. Nat Commun 2013
230
14

MicroRNA-mediated conversion of human fibroblasts to neurons.
Andrew S Yoo, Alfred X Sun, Li Li, Aleksandr Shcheglovitov, Thomas Portmann, Yulong Li, Chris Lee-Messer, Ricardo E Dolmetsch, Richard W Tsien, Gerald R Crabtree. Nature 2011
672
13

Functional properties of neurons derived from in vitro reprogrammed postnatal astroglia.
Benedikt Berninger, Marcos R Costa, Ursula Koch, Timm Schroeder, Bernd Sutor, Benedikt Grothe, Magdalena Götz. J Neurosci 2007
266
13

Diverse reprogramming codes for neuronal identity.
Rachel Tsunemoto, Sohyon Lee, Attila Szűcs, Pavel Chubukov, Irina Sokolova, Joel W Blanchard, Kevin T Eade, Jacob Bruggemann, Chunlei Wu, Ali Torkamani,[...]. Nature 2018
70
18

Induction of pluripotent stem cells from adult human fibroblasts by defined factors.
Kazutoshi Takahashi, Koji Tanabe, Mari Ohnuki, Megumi Narita, Tomoko Ichisaka, Kiichiro Tomoda, Shinya Yamanaka. Cell 2007
13

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
12

Direct generation of functional dopaminergic neurons from mouse and human fibroblasts.
Massimiliano Caiazzo, Maria Teresa Dell'Anno, Elena Dvoretskova, Dejan Lazarevic, Stefano Taverna, Damiana Leo, Tatyana D Sotnikova, Andrea Menegon, Paola Roncaglia, Giorgia Colciago,[...]. Nature 2011
697
12


Reprogramming of pericyte-derived cells of the adult human brain into induced neuronal cells.
Marisa Karow, Rodrigo Sánchez, Christian Schichor, Giacomo Masserdotti, Felipe Ortega, Christophe Heinrich, Sergio Gascón, Muhammad A Khan, D Chichung Lie, Arianna Dellavalle,[...]. Cell Stem Cell 2012
224
11

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
11

Myt1 family recruits histone deacetylase to regulate neural transcription.
Elena Romm, Joseph A Nielsen, Jin G Kim, Lynn D Hudson. J Neurochem 2005
87
12

Direct reprogramming of adult human fibroblasts to functional neurons under defined conditions.
Rajesh Ambasudhan, Maria Talantova, Ronald Coleman, Xu Yuan, Saiyong Zhu, Stuart A Lipton, Sheng Ding. Cell Stem Cell 2011
350
11

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
11

Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
11

Directly Reprogrammed Human Neurons Retain Aging-Associated Transcriptomic Signatures and Reveal Age-Related Nucleocytoplasmic Defects.
Jerome Mertens, Apuã C M Paquola, Manching Ku, Emily Hatch, Lena Böhnke, Shauheen Ladjevardi, Sean McGrath, Benjamin Campbell, Hyungjun Lee, Joseph R Herdy,[...]. Cell Stem Cell 2015
366
11

Highly efficient neural conversion of human ES and iPS cells by dual inhibition of SMAD signaling.
Stuart M Chambers, Christopher A Fasano, Eirini P Papapetrou, Mark Tomishima, Michel Sadelain, Lorenz Studer. Nat Biotechnol 2009
11

Direct Neuronal Reprogramming: Achievements, Hurdles, and New Roads to Success.
Sergio Gascón, Giacomo Masserdotti, Gianluca Luigi Russo, Magdalena Götz. Cell Stem Cell 2017
84
13

Synaptic, transcriptional and chromatin genes disrupted in autism.
Silvia De Rubeis, Xin He, Arthur P Goldberg, Christopher S Poultney, Kaitlin Samocha, A Erucment Cicek, Yan Kou, Li Liu, Menachem Fromer, Susan Walker,[...]. Nature 2014
11

Rapid Conversion of Fibroblasts into Functional Forebrain GABAergic Interneurons by Direct Genetic Reprogramming.
Gaia Colasante, Gabriele Lignani, Alicia Rubio, Lucian Medrihan, Latefa Yekhlef, Alessandro Sessa, Luca Massimino, Serena G Giannelli, Silvio Sacchetti, Massimiliano Caiazzo,[...]. Cell Stem Cell 2015
105
10


Conversion of mouse and human fibroblasts into functional spinal motor neurons.
Esther Y Son, Justin K Ichida, Brian J Wainger, Jeremy S Toma, Victor F Rafuse, Clifford J Woolf, Kevin Eggan. Cell Stem Cell 2011
464
10

Rapid single-step induction of functional neurons from human pluripotent stem cells.
Yingsha Zhang, Changhui Pak, Yan Han, Henrik Ahlenius, Zhenjie Zhang, Soham Chanda, Samuele Marro, Christopher Patzke, Claudio Acuna, Jason Covy,[...]. Neuron 2013
665
10

NeuroD1 reprograms chromatin and transcription factor landscapes to induce the neuronal program.
Abhijeet Pataskar, Johannes Jung, Pawel Smialowski, Florian Noack, Federico Calegari, Tobias Straub, Vijay K Tiwari. EMBO J 2016
122
10

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
10

CRISPR Activation Screens Systematically Identify Factors that Drive Neuronal Fate and Reprogramming.
Yanxia Liu, Chen Yu, Timothy Patrick Daley, Fangyuan Wang, William S Cao, Salil Bhate, Xueqiu Lin, Chris Still, Honglei Liu, Dehua Zhao,[...]. Cell Stem Cell 2018
95
10

Direct lineage conversion of terminally differentiated hepatocytes to functional neurons.
Samuele Marro, Zhiping P Pang, Nan Yang, Miao-Chih Tsai, Kun Qu, Howard Y Chang, Thomas C Südhof, Marius Wernig. Cell Stem Cell 2011
245
10

Proneural genes and the specification of neural cell types.
Nicolas Bertrand, Diogo S Castro, François Guillemot. Nat Rev Neurosci 2002
10

Pioneer Factor NeuroD1 Rearranges Transcriptional and Epigenetic Profiles to Execute Microglia-Neuron Conversion.
Taito Matsuda, Takashi Irie, Shutaro Katsurabayashi, Yoshinori Hayashi, Tatsuya Nagai, Nobuhiko Hamazaki, Aliya Mari D Adefuin, Fumihito Miura, Takashi Ito, Hiroshi Kimura,[...]. Neuron 2019
78
12

Direct pericyte-to-neuron reprogramming via unfolding of a neural stem cell-like program.
Marisa Karow, J Gray Camp, Sven Falk, Tobias Gerber, Abhijeet Pataskar, Malgorzata Gac-Santel, Jorge Kageyama, Agnieska Brazovskaja, Angela Garding, Wenqiang Fan,[...]. Nat Neurosci 2018
51
19

Maintenance of age in human neurons generated by microRNA-based neuronal conversion of fibroblasts.
Christine J Huh, Bo Zhang, Matheus B Victor, Sonika Dahiya, Luis Fz Batista, Steve Horvath, Andrew S Yoo. Elife 2016
99
10

Small Molecules Efficiently Reprogram Human Astroglial Cells into Functional Neurons.
Lei Zhang, Jiu-Chao Yin, Hana Yeh, Ning-Xin Ma, Grace Lee, Xiangyun Amy Chen, Yanming Wang, Li Lin, Li Chen, Peng Jin,[...]. Cell Stem Cell 2015
170
9

Beyond proneural: emerging functions and regulations of proneural proteins.
François Guillemot, Bassem A Hassan. Curr Opin Neurobiol 2017
46
19

Sox2-mediated conversion of NG2 glia into induced neurons in the injured adult cerebral cortex.
Christophe Heinrich, Matteo Bergami, Sergio Gascón, Alexandra Lepier, Francesca Viganò, Leda Dimou, Bernd Sutor, Benedikt Berninger, Magdalena Götz. Stem Cell Reports 2014
192
9

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.
Jason D Buenrostro, Paul G Giresi, Lisa C Zaba, Howard Y Chang, William J Greenleaf. Nat Methods 2013
9


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.