A citation-based method for searching scientific literature

Alina Patke, Patricia J Murphy, Onur Emre Onat, Ana C Krieger, Tayfun Özçelik, Scott S Campbell, Michael W Young. Cell 2017
Times Cited: 160







List of co-cited articles
3966 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


An hPer2 phosphorylation site mutation in familial advanced sleep phase syndrome.
K L Toh, C R Jones, Y He, E J Eide, W A Hinz, D M Virshup, L J Ptácek, Y H Fu. Science 2001
913
35

A Cryptochrome 2 mutation yields advanced sleep phase in humans.
Arisa Hirano, Guangsen Shi, Christopher R Jones, Anna Lipzen, Len A Pennacchio, Ying Xu, William C Hallows, Thomas McMahon, Maya Yamazaki, Louis J Ptáček,[...]. Elife 2016
67
50


Transcriptional architecture and chromatin landscape of the core circadian clock in mammals.
Nobuya Koike, Seung-Hee Yoo, Hung-Chung Huang, Vivek Kumar, Choogon Lee, Tae-Kyung Kim, Joseph S Takahashi. Science 2012
859
24

Functional consequences of a CKIdelta mutation causing familial advanced sleep phase syndrome.
Ying Xu, Quasar S Padiath, Robert E Shapiro, Christopher R Jones, Susan C Wu, Noriko Saigoh, Kazumasa Saigoh, Louis J Ptácek, Ying-Hui Fu. Nature 2005
522
22

A circadian gene expression atlas in mammals: implications for biology and medicine.
Ray Zhang, Nicholas F Lahens, Heather I Ballance, Michael E Hughes, John B Hogenesch. Proc Natl Acad Sci U S A 2014
22

Identification of small molecule activators of cryptochrome.
Tsuyoshi Hirota, Jae Wook Lee, Peter C St John, Mariko Sawa, Keiko Iwaisako, Takako Noguchi, Pagkapol Y Pongsawakul, Tim Sonntag, David K Welsh, David A Brenner,[...]. Science 2012
286
18

SCF(FBXL3) ubiquitin ligase targets cryptochromes at their cofactor pocket.
Weiman Xing, Luca Busino, Thomas R Hinds, Samuel T Marionni, Nabiha H Saifee, Matthew F Bush, Michele Pagano, Ning Zheng. Nature 2013
146
17

Formation of a repressive complex in the mammalian circadian clock is mediated by the secondary pocket of CRY1.
Alicia K Michael, Jennifer L Fribourgh, Yogarany Chelliah, Colby R Sandate, Greg L Hura, Dina Schneidman-Duhovny, Sarvind M Tripathi, Joseph S Takahashi, Carrie L Partch. Proc Natl Acad Sci U S A 2017
51
33

Modeling of a human circadian mutation yields insights into clock regulation by PER2.
Y Xu, K L Toh, C R Jones, J-Y Shin, Y-H Fu, L J Ptácek. Cell 2007
269
15

Mammalian Cry1 and Cry2 are essential for maintenance of circadian rhythms.
G T van der Horst, M Muijtjens, K Kobayashi, R Takano, S Kanno, M Takao, J de Wit, A Verkerk, A P Eker, D van Leenen,[...]. Nature 1999
976
15

Cryptochrome mediates circadian regulation of cAMP signaling and hepatic gluconeogenesis.
Eric E Zhang, Yi Liu, Renaud Dentin, Pagkapol Y Pongsawakul, Andrew C Liu, Tsuyoshi Hirota, Dmitri A Nusinow, Xiujie Sun, Severine Landais, Yuzo Kodama,[...]. Nat Med 2010
345
14

Isoform-selective regulation of mammalian cryptochromes.
Simon Miller, You Lee Son, Yoshiki Aikawa, Eri Makino, Yoshiko Nagai, Ashutosh Srivastava, Tsuyoshi Oshima, Akiko Sugiyama, Aya Hara, Kazuhiro Abe,[...]. Nat Chem Biol 2020
29
48

Life between clocks: daily temporal patterns of human chronotypes.
Till Roenneberg, Anna Wirz-Justice, Martha Merrow. J Biol Rhythms 2003
13

Macromolecular Assemblies of the Mammalian Circadian Clock.
Rajindra P Aryal, Pieter Bas Kwak, Alfred G Tamayo, Michael Gebert, Po-Lin Chiu, Thomas Walz, Charles J Weitz. Mol Cell 2017
118
13

Circadian physiology of metabolism.
Satchidananda Panda. Science 2016
405
12

Circadian mutant Overtime reveals F-box protein FBXL3 regulation of cryptochrome and period gene expression.
Sandra M Siepka, Seung-Hee Yoo, Junghea Park, Weimin Song, Vivek Kumar, Yinin Hu, Choogon Lee, Joseph S Takahashi. Cell 2007
384
12

Molecular architecture of the mammalian circadian clock.
Carrie L Partch, Carla B Green, Joseph S Takahashi. Trends Cell Biol 2014
729
12

Structures of Drosophila cryptochrome and mouse cryptochrome1 provide insight into circadian function.
Anna Czarna, Alex Berndt, Hari Raj Singh, Astrid Grudziecki, Andreas G Ladurner, Gyula Timinszky, Achim Kramer, Eva Wolf. Cell 2013
119
12

An evolutionary hotspot defines functional differences between CRYPTOCHROMES.
Clark Rosensweig, Kimberly A Reynolds, Peng Gao, Isara Laothamatas, Yongli Shan, Rama Ranganathan, Joseph S Takahashi, Carla B Green. Nat Commun 2018
41
29

Familial advanced sleep-phase syndrome: A short-period circadian rhythm variant in humans.
C R Jones, S S Campbell, S E Zone, F Cooper, A DeSano, P J Murphy, B Jones, L Czajkowski, L J Ptácek. Nat Med 1999
325
11

Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.
Samuel E Jones, Jessica Tyrrell, Andrew R Wood, Robin N Beaumont, Katherine S Ruth, Marcus A Tuke, Hanieh Yaghootkar, Youna Hu, Maris Teder-Laving, Caroline Hayward,[...]. PLoS Genet 2016
186
11


Diurnal transcriptome atlas of a primate across major neural and peripheral tissues.
Ludovic S Mure, Hiep D Le, Giorgia Benegiamo, Max W Chang, Luis Rios, Ngalla Jillani, Maina Ngotho, Thomas Kariuki, Ouria Dkhissi-Benyahya, Howard M Cooper,[...]. Science 2018
299
11

Generation of circadian rhythms in the suprachiasmatic nucleus.
Michael H Hastings, Elizabeth S Maywood, Marco Brancaccio. Nat Rev Neurosci 2018
270
11

Cryptochromes mediate rhythmic repression of the glucocorticoid receptor.
Katja A Lamia, Stephanie J Papp, Ruth T Yu, Grant D Barish, N Henriette Uhlenhaut, Johan W Jonker, Michael Downes, Ronald M Evans. Nature 2011
357
11

The after-hours mutant reveals a role for Fbxl3 in determining mammalian circadian period.
Sofia I H Godinho, Elizabeth S Maywood, Linda Shaw, Valter Tucci, Alun R Barnard, Luca Busino, Michele Pagano, Rachel Kendall, Mohamed M Quwailid, M Rosario Romero,[...]. Science 2007
344
11

Cryptochrome 1 regulates the circadian clock through dynamic interactions with the BMAL1 C terminus.
Haiyan Xu, Chelsea L Gustafson, Patrick J Sammons, Sanjoy K Khan, Nicole C Parsley, Chidambaram Ramanathan, Hsiau-Wei Lee, Andrew C Liu, Carrie L Partch. Nat Struct Mol Biol 2015
93
11

Molecular assembly of the period-cryptochrome circadian transcriptional repressor complex.
Shannon N Nangle, Clark Rosensweig, Nobuya Koike, Hajime Tei, Joseph S Takahashi, Carla B Green, Ning Zheng. Elife 2014
64
17

A PERIOD3 variant causes a circadian phenotype and is associated with a seasonal mood trait.
Luoying Zhang, Arisa Hirano, Pei-Ken Hsu, Christopher R Jones, Noriaki Sakai, Masashi Okuro, Thomas McMahon, Maya Yamazaki, Ying Xu, Noriko Saigoh,[...]. Proc Natl Acad Sci U S A 2016
77
12

A two process model of sleep regulation.
A A Borbély. Hum Neurobiol 1982
10

Social jetlag: misalignment of biological and social time.
Marc Wittmann, Jenny Dinich, Martha Merrow, Till Roenneberg. Chronobiol Int 2006
10

The orphan nuclear receptor REV-ERBalpha controls circadian transcription within the positive limb of the mammalian circadian oscillator.
Nicolas Preitner, Francesca Damiola, Luis Lopez-Molina, Joszef Zakany, Denis Duboule, Urs Albrecht, Ueli Schibler. Cell 2002
10

Competing E3 ubiquitin ligases govern circadian periodicity by degradation of CRY in nucleus and cytoplasm.
Seung-Hee Yoo, Jennifer A Mohawk, Sandra M Siepka, Yongli Shan, Seong Kwon Huh, Hee-Kyung Hong, Izabela Kornblum, Vivek Kumar, Nobuya Koike, Ming Xu,[...]. Cell 2013
206
10


Circadian time signatures of fitness and disease.
Joseph Bass, Mitchell A Lazar. Science 2016
283
10

Intercellular coupling confers robustness against mutations in the SCN circadian clock network.
Andrew C Liu, David K Welsh, Caroline H Ko, Hien G Tran, Eric E Zhang, Aaron A Priest, Ethan D Buhr, Oded Singer, Kirsten Meeker, Inder M Verma,[...]. Cell 2007
493
10

Dynamics at the serine loop underlie differential affinity of cryptochromes for CLOCK:BMAL1 to control circadian timing.
Jennifer L Fribourgh, Ashutosh Srivastava, Colby R Sandate, Alicia K Michael, Peter L Hsu, Christin Rakers, Leslee T Nguyen, Megan R Torgrimson, Gian Carlo G Parico, Sarvind Tripathi,[...]. Elife 2020
21
47

Disruption of the clock components CLOCK and BMAL1 leads to hypoinsulinaemia and diabetes.
Biliana Marcheva, Kathryn Moynihan Ramsey, Ethan D Buhr, Yumiko Kobayashi, Hong Su, Caroline H Ko, Ganka Ivanova, Chiaki Omura, Shelley Mo, Martha H Vitaterna,[...]. Nature 2010
935
9

Feedback repression is required for mammalian circadian clock function.
Trey K Sato, Rikuhiro G Yamada, Hideki Ukai, Julie E Baggs, Loren J Miraglia, Tetsuya J Kobayashi, David K Welsh, Steve A Kay, Hiroki R Ueda, John B Hogenesch. Nat Genet 2006
263
9

Posttranslational mechanisms regulate the mammalian circadian clock.
C Lee, J P Etchegaray, F R Cagampang, A S Loudon, S M Reppert. Cell 2001
835
9

Entrainment of the human circadian clock to the natural light-dark cycle.
Kenneth P Wright, Andrew W McHill, Brian R Birks, Brandon R Griffin, Thomas Rusterholz, Evan D Chinoy. Curr Biol 2013
310
9

A length polymorphism in the circadian clock gene Per3 is linked to delayed sleep phase syndrome and extreme diurnal preference.
Simon N Archer, Donna L Robilliard, Debra J Skene, Marcel Smits, Adrian Williams, Josephine Arendt, Malcolm von Schantz. Sleep 2003
427
9

Coordinated transcription of key pathways in the mouse by the circadian clock.
Satchidananda Panda, Marina P Antoch, Brooke H Miller, Andrew I Su, Andrew B Schook, Marty Straume, Peter G Schultz, Steve A Kay, Joseph S Takahashi, John B Hogenesch. Cell 2002
9

PERIOD2::LUCIFERASE real-time reporting of circadian dynamics reveals persistent circadian oscillations in mouse peripheral tissues.
Seung-Hee Yoo, Shin Yamazaki, Phillip L Lowrey, Kazuhiro Shimomura, Caroline H Ko, Ethan D Buhr, Sandra M Siepka, Hee-Kyung Hong, Won Jun Oh, Ook Joon Yoo,[...]. Proc Natl Acad Sci U S A 2004
9

mCRY1 and mCRY2 are essential components of the negative limb of the circadian clock feedback loop.
K Kume, M J Zylka, S Sriram, L P Shearman, D R Weaver, X Jin, E S Maywood, M H Hastings, S M Reppert. Cell 1999
9

Phosphorylation of the cryptochrome 1 C-terminal tail regulates circadian period length.
Peng Gao, Seung-Hee Yoo, Kyung-Jong Lee, Clark Rosensweig, Joseph S Takahashi, Benjamin P Chen, Carla B Green. J Biol Chem 2013
51
17

SCFFbxl3 controls the oscillation of the circadian clock by directing the degradation of cryptochrome proteins.
Luca Busino, Florian Bassermann, Alessio Maiolica, Choogon Lee, Patrick M Nolan, Sofia I H Godinho, Giulio F Draetta, Michele Pagano. Science 2007
358
9

Knockout-Rescue Embryonic Stem Cell-Derived Mouse Reveals Circadian-Period Control by Quality and Quantity of CRY1.
Koji L Ode, Hideki Ukai, Etsuo A Susaki, Ryohei Narumi, Katsuhiko Matsumoto, Junko Hara, Naoshi Koide, Takaya Abe, Masato T Kanemaki, Hiroshi Kiyonari,[...]. Mol Cell 2017
48
18

Mop3 is an essential component of the master circadian pacemaker in mammals.
M K Bunger, L D Wilsbacher, S M Moran, C Clendenin, L A Radcliffe, J B Hogenesch, M C Simon, J S Takahashi, C A Bradfield. Cell 2000
9


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.