A citation-based method for searching scientific literature

Amanda C Hall, Lauren A Ostrowski, Violena Pietrobon, Karim Mekhail. Nucleus 2017
Times Cited: 18







List of co-cited articles
204 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Roles for Pbp1 and caloric restriction in genome and lifespan maintenance via suppression of RNA-DNA hybrids.
Jayesh S Salvi, Janet N Y Chan, Kirk Szafranski, Tony T Liu, Jane D Wu, Jonathan B Olsen, Nurussaba Khanam, Betty P K Poon, Andrew Emili, Karim Mekhail. Dev Cell 2014
46
27

Intersection of calorie restriction and magnesium in the suppression of genome-destabilizing RNA-DNA hybrids.
Karan J Abraham, Janet N Y Chan, Jayesh S Salvi, Brandon Ho, Amanda Hall, Elva Vidya, Ru Guo, Samuel A Killackey, Nancy Liu, Jeffrey E Lee,[...]. Nucleic Acids Res 2016
19
22

Ataxin-2 intermediate-length polyglutamine expansions are associated with increased risk for ALS.
Andrew C Elden, Hyung-Jun Kim, Michael P Hart, Alice S Chen-Plotkin, Brian S Johnson, Xiaodong Fang, Maria Armakola, Felix Geser, Robert Greene, Min Min Lu,[...]. Nature 2010
750
22

Retrotransposon activation contributes to neurodegeneration in a Drosophila TDP-43 model of ALS.
Lisa Krug, Nabanita Chatterjee, Rebeca Borges-Monroy, Stephen Hearn, Wen-Wei Liao, Kathleen Morrill, Lisa Prazak, Nikolay Rozhkov, Delphine Theodorou, Molly Hammell,[...]. PLoS Genet 2017
87
22

Initial sequencing and analysis of the human genome.
E S Lander, L M Linton, B Birren, C Nusbaum, M C Zody, J Baldwin, K Devon, K Dewar, M Doyle, W FitzHugh,[...]. Nature 2001
22



R loops: new modulators of genome dynamics and function.
José M Santos-Pereira, Andrés Aguilera. Nat Rev Genet 2015
357
22

The DNA-damage response in human biology and disease.
Stephen P Jackson, Jiri Bartek. Nature 2009
16

Repetitive elements may comprise over two-thirds of the human genome.
A P Jason de Koning, Wanjun Gu, Todd A Castoe, Mark A Batzer, David D Pollock. PLoS Genet 2011
577
16

Ataxin-2: From RNA Control to Human Health and Disease.
Lauren A Ostrowski, Amanda C Hall, Karim Mekhail. Genes (Basel) 2017
26
16

Multiple cellular mechanisms prevent chromosomal rearrangements involving repetitive DNA.
Carolyn M George, Eric Alani. Crit Rev Biochem Mol Biol 2012
37
16



Transcription termination and RNA degradation contribute to silencing of RNA polymerase II transcription within heterochromatin.
Lidia Vasiljeva, Minkyu Kim, Nihal Terzi, Luis M Soares, Stephen Buratowski. Mol Cell 2008
108
16

Role for perinuclear chromosome tethering in maintenance of genome stability.
Karim Mekhail, Jan Seebacher, Steven P Gygi, Danesh Moazed. Nature 2008
170
16

Ribosomal RNA gene repeats, their stability and cellular senescence.
Takehiko Kobayashi. Proc Jpn Acad Ser B Phys Biol Sci 2014
75
16

Somatic retrotransposition in human cancer revealed by whole-genome and exome sequencing.
Elena Helman, Michael S Lawrence, Chip Stewart, Carrie Sougnez, Gad Getz, Matthew Meyerson. Genome Res 2014
125
16

Trf4 targets ncRNAs from telomeric and rDNA spacer regions and functions in rDNA copy number control.
Jonathan Houseley, Kimberly Kotovic, Aziz El Hage, David Tollervey. EMBO J 2007
136
16

Genome-wide profiling of yeast DNA:RNA hybrid prone sites with DRIP-chip.
Yujia A Chan, Maria J Aristizabal, Phoebe Y T Lu, Zongli Luo, Akil Hamza, Michael S Kobor, Peter C Stirling, Philip Hieter. PLoS Genet 2014
132
16

The multifunctional nucleolus.
François-Michel Boisvert, Silvana van Koningsbruggen, Joaquín Navascués, Angus I Lamond. Nat Rev Mol Cell Biol 2007
932
16

Human ribosomal RNA gene arrays display a broad range of palindromic structures.
Sandrine Caburet, Chiara Conti, Catherine Schurra, Ronald Lebofsky, Stuart J Edelstein, Aaron Bensimon. Genome Res 2005
92
16

DNA replication stress restricts ribosomal DNA copy number.
Devika Salim, William D Bradford, Amy Freeland, Gillian Cady, Jianmin Wang, Steven C Pruitt, Jennifer L Gerton. PLoS Genet 2017
37
16

Genomic architecture and inheritance of human ribosomal RNA gene clusters.
Dawn M Stults, Michael W Killen, Heather H Pierce, Andrew J Pierce. Genome Res 2008
159
16

Structure and function of ribosomal RNA gene chromatin.
Joanna L Birch, Joost C B M Zomerdijk. Biochem Soc Trans 2008
42
16

RNase H enables efficient repair of R-loop induced DNA damage.
Jeremy D Amon, Douglas Koshland. Elife 2016
63
16

Integrative genomic analysis of human ribosomal DNA.
Gabriel E Zentner, Alina Saiakhova, Pavel Manaenkov, Mark D Adams, Peter C Scacheri. Nucleic Acids Res 2011
99
16

Ribosomal DNA copy loss and repeat instability in ATRX-mutated cancers.
Maheshi Udugama, Elaine Sanij, Hsiao P J Voon, Jinbae Son, Linda Hii, Jeremy D Henson, F Lyn Chan, Fiona T M Chang, Yumei Liu, Richard B Pearson,[...]. Proc Natl Acad Sci U S A 2018
37
16

Breaks in the 45S rDNA Lead to Recombination-Mediated Loss of Repeats.
Daniël O Warmerdam, Jeroen van den Berg, René H Medema. Cell Rep 2016
45
16


The Nucleolus: In Genome Maintenance and Repair.
Maria Tsekrekou, Kalliopi Stratigi, Georgia Chatzinikolaou. Int J Mol Sci 2017
34
16

The Smc5-Smc6 complex and SUMO modification of Rad52 regulates recombinational repair at the ribosomal gene locus.
Jordi Torres-Rosell, Ivana Sunjevaric, Giacomo De Piccoli, Meik Sacher, Nadine Eckert-Boulet, Robert Reid, Stefan Jentsch, Rodney Rothstein, Luis Aragón, Michael Lisby. Nat Cell Biol 2007
271
16

Abundance of ribosomal RNA gene copies maintains genome integrity.
Satoru Ide, Takaaki Miyazaki, Hisaji Maki, Takehiko Kobayashi. Science 2010
183
16



The nucleolus under stress.
Séverine Boulon, Belinda J Westman, Saskia Hutten, François-Michel Boisvert, Angus I Lamond. Mol Cell 2010
586
16

Repeated genes in eukaryotes.
E O Long, I B Dawid. Annu Rev Biochem 1980
968
16

G-quadruplexes and their regulatory roles in biology.
Daniela Rhodes, Hans J Lipps. Nucleic Acids Res 2015
661
16

Immobilization of proteins in the nucleolus by ribosomal intergenic spacer noncoding RNA.
Timothy E Audas, Mathieu D Jacob, Stephen Lee. Mol Cell 2012
147
16

Alu element-containing RNAs maintain nucleolar structure and function.
Maïwen Caudron-Herger, Teresa Pankert, Jeanette Seiler, Attila Németh, Renate Voit, Ingrid Grummt, Karsten Rippe. EMBO J 2015
71
16

Heterochromatin: Guardian of the Genome.
Aniek Janssen, Serafin U Colmenares, Gary H Karpen. Annu Rev Cell Dev Biol 2018
112
16

Roles for retrotransposon insertions in human disease.
Dustin C Hancks, Haig H Kazazian. Mob DNA 2016
254
16

RNaseH1 regulates TERRA-telomeric DNA hybrids and telomere maintenance in ALT tumour cells.
Rajika Arora, Yongwoo Lee, Harry Wischnewski, Catherine M Brun, Tobias Schwarz, Claus M Azzalin. Nat Commun 2014
196
16

R loops: from transcription byproducts to threats to genome stability.
Andrés Aguilera, Tatiana García-Muse. Mol Cell 2012
555
16

Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination.
Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Natalia Gromak. Mol Cell 2011
417
16

The Fanconi Anemia Pathway Maintains Genome Stability by Coordinating Replication and Transcription.
Rebekka A Schwab, Jadwiga Nieminuszczy, Fenil Shah, Jamie Langton, David Lopez Martinez, Chih-Chao Liang, Martin A Cohn, Richard J Gibbons, Andrew J Deans, Wojciech Niedzwiedz. Mol Cell 2015
185
16

RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships.
Julie Nadel, Rodoniki Athanasiadou, Christophe Lemetre, N Ari Wijetunga, Pilib Ó Broin, Hanae Sato, Zhengdong Zhang, Jeffrey Jeddeloh, Cristina Montagna, Aaron Golden,[...]. Epigenetics Chromatin 2015
73
16

Regulatory R-loops as facilitators of gene expression and genome stability.
Christof Niehrs, Brian Luke. Nat Rev Mol Cell Biol 2020
54
16

R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
162
16

Ultra-deep Coverage Single-molecule R-loop Footprinting Reveals Principles of R-loop Formation.
Maika Malig, Stella R Hartono, Jenna M Giafaglione, Lionel A Sanz, Frederic Chedin. J Mol Biol 2020
17
17


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.