A citation-based method for searching scientific literature

Jan Bednar, Isabel Garcia-Saez, Ramachandran Boopathi, Amber R Cutter, Gabor Papai, Anna Reymer, Sajad H Syed, Imtiaz Nisar Lone, Ognyan Tonchev, Corinne Crucifix, Hervé Menoni, Christophe Papin, Dimitrios A Skoufias, Hitoshi Kurumizaka, Richard Lavery, Ali Hamiche, Jeffrey J Hayes, Patrick Schultz, Dimitar Angelov, Carlo Petosa, Stefan Dimitrov. Mol Cell 2017
Times Cited: 119







List of co-cited articles
1270 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Crystal structure of the nucleosome core particle at 2.8 A resolution.
K Luger, A W Mäder, R K Richmond, D F Sargent, T J Richmond. Nature 1997
61

Cryo-EM study of the chromatin fiber reveals a double helix twisted by tetranucleosomal units.
Feng Song, Ping Chen, Dapeng Sun, Mingzhu Wang, Liping Dong, Dan Liang, Rui-Ming Xu, Ping Zhu, Guohong Li. Science 2014
338
48

Structural Mechanisms of Nucleosome Recognition by Linker Histones.
Bing-Rui Zhou, Jiansheng Jiang, Hanqiao Feng, Rodolfo Ghirlando, T Sam Xiao, Yawen Bai. Mol Cell 2015
128
46

Structural insights into the histone H1-nucleosome complex.
Bing-Rui Zhou, Hanqiao Feng, Hidenori Kato, Liang Dai, Yuedong Yang, Yaoqi Zhou, Yawen Bai. Proc Natl Acad Sci U S A 2013
125
34

Emerging roles of linker histones in regulating chromatin structure and function.
Dmitry V Fyodorov, Bing-Rui Zhou, Arthur I Skoultchi, Yawen Bai. Nat Rev Mol Cell Biol 2018
160
31


Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution.
Curt A Davey, David F Sargent, Karolin Luger, Armin W Maeder, Timothy J Richmond. J Mol Biol 2002
966
28

X-ray structure of a tetranucleosome and its implications for the chromatin fibre.
Thomas Schalch, Sylwia Duda, David F Sargent, Timothy J Richmond. Nature 2005
506
27


ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells.
Horng D Ou, Sébastien Phan, Thomas J Deerinck, Andrea Thor, Mark H Ellisman, Clodagh C O'Shea. Science 2017
361
25

Structure of an H1-Bound 6-Nucleosome Array Reveals an Untwisted Two-Start Chromatin Fiber Conformation.
Isabel Garcia-Saez, Hervé Menoni, Ramachandran Boopathi, Manu S Shukla, Lama Soueidan, Marjolaine Noirclerc-Savoye, Aline Le Roy, Dimitrios A Skoufias, Jan Bednar, Ali Hamiche,[...]. Mol Cell 2018
41
60


Nucleosome repeat length and linker histone stoichiometry determine chromatin fiber structure.
Andrew Routh, Sara Sandin, Daniela Rhodes. Proc Natl Acad Sci U S A 2008
232
22

Single-base resolution mapping of H1-nucleosome interactions and 3D organization of the nucleosome.
Sajad Hussain Syed, Damien Goutte-Gattat, Nils Becker, Sam Meyer, Manu Shubhdarshan Shukla, Jeffrey J Hayes, Ralf Everaers, Dimitar Angelov, Jan Bednar, Stefan Dimitrov. Proc Natl Acad Sci U S A 2010
134
22

Chromatin fibers are formed by heterogeneous groups of nucleosomes in vivo.
Maria Aurelia Ricci, Carlo Manzo, María Filomena García-Parajo, Melike Lakadamyali, Maria Pia Cosma. Cell 2015
308
21

EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure.
Philip J J Robinson, Louise Fairall, Van A T Huynh, Daniela Rhodes. Proc Natl Acad Sci U S A 2006
307
20

Hierarchical looping of zigzag nucleosome chains in metaphase chromosomes.
Sergei A Grigoryev, Gavin Bascom, Jenna M Buckwalter, Michael B Schubert, Christopher L Woodcock, Tamar Schlick. Proc Natl Acad Sci U S A 2016
83
22

Spheroid chromatin units (v bodies).
A L Olins, D E Olins. Science 1974
19

A Small Number of Residues Can Determine if Linker Histones Are Bound On or Off Dyad in the Chromatosome.
Bing-Rui Zhou, Hanqiao Feng, Rodolfo Ghirlando, Shipeng Li, Charles D Schwieters, Yawen Bai. J Mol Biol 2016
28
67

Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatin.
J Bednar, R A Horowitz, S A Grigoryev, L M Carruthers, J C Hansen, A J Koster, C L Woodcock. Proc Natl Acad Sci U S A 1998
371
17

Histone H1 depletion in mammals alters global chromatin structure but causes specific changes in gene regulation.
Yuhong Fan, Tatiana Nikitina, Jie Zhao, Tomara J Fleury, Riddhi Bhattacharyya, Eric E Bouhassira, Arnold Stein, Christopher L Woodcock, Arthur I Skoultchi. Cell 2005
385
17

Role of linker histone in chromatin structure and function: H1 stoichiometry and nucleosome repeat length.
Christopher L Woodcock, Arthur I Skoultchi, Yuhong Fan. Chromosome Res 2006
301
17


The structure of histone H1 and its location in chromatin.
J Allan, P G Hartman, C Crane-Robinson, F X Aviles. Nature 1980
593
16

Nucleosome arrays reveal the two-start organization of the chromatin fiber.
Benedetta Dorigo, Thomas Schalch, Alexandra Kulangara, Sylwia Duda, Rasmus R Schroeder, Timothy J Richmond. Science 2004
375
16


UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
16

Variable chromatin structure revealed by in situ spatially correlated DNA cleavage mapping.
Viviana I Risca, Sarah K Denny, Aaron F Straight, William J Greenleaf. Nature 2017
89
17

Highly disordered histone H1-DNA model complexes and their condensates.
Abigail L Turner, Matthew Watson, Oscar G Wilkins, Laura Cato, Andrew Travers, Jean O Thomas, Katherine Stott. Proc Natl Acad Sci U S A 2018
73
21

Modulations of DNA Contacts by Linker Histones and Post-translational Modifications Determine the Mobility and Modifiability of Nucleosomal H3 Tails.
Alexandra Stützer, Stamatios Liokatis, Anja Kiesel, Dirk Schwarzer, Remco Sprangers, Johannes Söding, Philipp Selenko, Wolfgang Fischle. Mol Cell 2016
66
22

Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C.
Tsung-Han S Hsieh, Assaf Weiner, Bryan Lajoie, Job Dekker, Nir Friedman, Oliver J Rando. Cell 2015
280
15

Dynamic binding of histone H1 to chromatin in living cells.
T Misteli, A Gunjan, R Hock, M Bustin, D T Brown. Nature 2000
466
15

Crystal structure of globular domain of histone H5 and its implications for nucleosome binding.
V Ramakrishnan, J T Finch, V Graziano, P L Lee, R M Sweet. Nature 1993
616
14

Histone H4-K16 acetylation controls chromatin structure and protein interactions.
Michael Shogren-Knaak, Haruhiko Ishii, Jian-Min Sun, Michael J Pazin, James R Davie, Craig L Peterson. Science 2006
14

Conformational selection and dynamic adaptation upon linker histone binding to the nucleosome.
Mehmet Ali Öztürk, Georgi V Pachov, Rebecca C Wade, Vlad Cojocaru. Nucleic Acids Res 2016
22
63

Toward an Ensemble View of Chromatosome Structure: A Paradigm Shift from One to Many.
Mehmet Ali Öztürk, Vlad Cojocaru, Rebecca C Wade. Structure 2018
18
77

Coupling between Histone Conformations and DNA Geometry in Nucleosomes on a Microsecond Timescale: Atomistic Insights into Nucleosome Functions.
Alexey K Shaytan, Grigoriy A Armeev, Alexander Goncearenco, Victor B Zhurkin, David Landsman, Anna R Panchenko. J Mol Biol 2016
81
17


Solenoidal model for superstructure in chromatin.
J T Finch, A Klug. Proc Natl Acad Sci U S A 1976
13


Citrullination regulates pluripotency and histone H1 binding to chromatin.
Maria A Christophorou, Gonçalo Castelo-Branco, Richard P Halley-Stott, Clara Slade Oliveira, Remco Loos, Aliaksandra Radzisheuskaya, Kerri A Mowen, Paul Bertone, José C R Silva, Magdalena Zernicka-Goetz,[...]. Nature 2014
218
13

Nucleosome structure and function.
Robert K McGinty, Song Tan. Chem Rev 2015
209
13

Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ.
Mikhail Eltsov, Kirsty M Maclellan, Kazuhiro Maeshima, Achilleas S Frangakis, Jacques Dubochet. Proc Natl Acad Sci U S A 2008
229
13

Chromatin Unfolding by Epigenetic Modifications Explained by Dramatic Impairment of Internucleosome Interactions: A Multiscale Computational Study.
Rosana Collepardo-Guevara, Guillem Portella, Michele Vendruscolo, Daan Frenkel, Tamar Schlick, Modesto Orozco. J Am Chem Soc 2015
78
16

Evidence for heteromorphic chromatin fibers from analysis of nucleosome interactions.
Sergei A Grigoryev, Gaurav Arya, Sarah Correll, Christopher L Woodcock, Tamar Schlick. Proc Natl Acad Sci U S A 2009
157
13


Chromatin fiber polymorphism triggered by variations of DNA linker lengths.
Rosana Collepardo-Guevara, Tamar Schlick. Proc Natl Acad Sci U S A 2014
83
15

The structure of DNA in the nucleosome core.
Timothy J Richmond, Curt A Davey. Nature 2003
775
12

Cryo-EM structures of PRC2 simultaneously engaged with two functionally distinct nucleosomes.
Simon Poepsel, Vignesh Kasinath, Eva Nogales. Nat Struct Mol Biol 2018
99
12



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.