A citation-based method for searching scientific literature

Yehudit Hasin, Marcus Seldin, Aldons Lusis. Genome Biol 2017
Times Cited: 631







List of co-cited articles
318 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Multi-omics Data Integration, Interpretation, and Its Application.
Indhupriya Subramanian, Srikant Verma, Shiva Kumar, Abhay Jere, Krishanpal Anamika. Bioinform Biol Insights 2020
178
10

Integrative omics for health and disease.
Konrad J Karczewski, Michael P Snyder. Nat Rev Genet 2018
318
9

Network approaches to systems biology analysis of complex disease: integrative methods for multi-omics data.
Jingwen Yan, Shannon L Risacher, Li Shen, Andrew J Saykin. Brief Bioinform 2018
98
9

Deep Learning-Based Multi-Omics Integration Robustly Predicts Survival in Liver Cancer.
Kumardeep Chaudhary, Olivier B Poirion, Liangqun Lu, Lana X Garmire. Clin Cancer Res 2018
301
7

Similarity network fusion for aggregating data types on a genomic scale.
Bo Wang, Aziz M Mezlini, Feyyaz Demir, Marc Fiume, Zhuowen Tu, Michael Brudno, Benjamin Haibe-Kains, Anna Goldenberg. Nat Methods 2014
599
7

Multi-Omics Factor Analysis-a framework for unsupervised integration of multi-omics data sets.
Ricard Argelaguet, Britta Velten, Damien Arnol, Sascha Dietrich, Thorsten Zenz, John C Marioni, Florian Buettner, Wolfgang Huber, Oliver Stegle. Mol Syst Biol 2018
245
7

WGCNA: an R package for weighted correlation network analysis.
Peter Langfelder, Steve Horvath. BMC Bioinformatics 2008
6


Making multi-omics data accessible to researchers.
Ana Conesa, Stephan Beck. Sci Data 2019
42
11

Systems Biology and Multi-Omics Integration: Viewpoints from the Metabolomics Research Community.
Farhana R Pinu, David J Beale, Amy M Paten, Konstantinos Kouremenos, Sanjay Swarup, Horst J Schirra, David Wishart. Metabolites 2019
189
5

STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.
Damian Szklarczyk, Annika L Gable, David Lyon, Alexander Junge, Stefan Wyder, Jaime Huerta-Cepas, Milan Simonovic, Nadezhda T Doncheva, John H Morris, Peer Bork,[...]. Nucleic Acids Res 2019
5


Integrated Omics: Tools, Advances, and Future Approaches.
Biswapriya B Misra, Carl D Langefeld, Michael Olivier, Laura A Cox. J Mol Endocrinol 2018
121
5

KEGG: kyoto encyclopedia of genes and genomes.
M Kanehisa, S Goto. Nucleic Acids Res 2000
5

Methods of integrating data to uncover genotype-phenotype interactions.
Marylyn D Ritchie, Emily R Holzinger, Ruowang Li, Sarah A Pendergrass, Dokyoon Kim. Nat Rev Genet 2015
431
4

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
4


Network propagation: a universal amplifier of genetic associations.
Lenore Cowen, Trey Ideker, Benjamin J Raphael, Roded Sharan. Nat Rev Genet 2017
215
4

DrugBank 5.0: a major update to the DrugBank database for 2018.
David S Wishart, Yannick D Feunang, An C Guo, Elvis J Lo, Ana Marcu, Jason R Grant, Tanvir Sajed, Daniel Johnson, Carin Li, Zinat Sayeeda,[...]. Nucleic Acids Res 2018
4


mixOmics: An R package for 'omics feature selection and multiple data integration.
Florian Rohart, Benoît Gautier, Amrit Singh, Kim-Anh Lê Cao. PLoS Comput Biol 2017
948
4

JOINT AND INDIVIDUAL VARIATION EXPLAINED (JIVE) FOR INTEGRATED ANALYSIS OF MULTIPLE DATA TYPES.
Eric F Lock, Katherine A Hoadley, J S Marron, Andrew B Nobel. Ann Appl Stat 2013
154
4

More Is Better: Recent Progress in Multi-Omics Data Integration Methods.
Sijia Huang, Kumardeep Chaudhary, Lana X Garmire. Front Genet 2017
285
4

Benefits and limitations of genome-wide association studies.
Vivian Tam, Nikunj Patel, Michelle Turcotte, Yohan Bossé, Guillaume Paré, David Meyre. Nat Rev Genet 2019
426
4

Transcriptomics technologies.
Rohan Lowe, Neil Shirley, Mark Bleackley, Stephen Dolan, Thomas Shafee. PLoS Comput Biol 2017
238
4

Global Cancer Statistics 2020: GLOBOCAN Estimates of Incidence and Mortality Worldwide for 36 Cancers in 185 Countries.
Hyuna Sung, Jacques Ferlay, Rebecca L Siegel, Mathieu Laversanne, Isabelle Soerjomataram, Ahmedin Jemal, Freddie Bray. CA Cancer J Clin 2021
4

Onco-Multi-OMICS Approach: A New Frontier in Cancer Research.
Sajib Chakraborty, Md Ismail Hosen, Musaddeque Ahmed, Hossain Uddin Shekhar. Biomed Res Int 2018
104
4

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update.
Maxim V Kuleshov, Matthew R Jones, Andrew D Rouillard, Nicolas F Fernandez, Qiaonan Duan, Zichen Wang, Simon Koplev, Sherry L Jenkins, Kathleen M Jagodnik, Alexander Lachmann,[...]. Nucleic Acids Res 2016
4

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
4

Prediction of total genetic value using genome-wide dense marker maps.
T H Meuwissen, B J Hayes, M E Goddard. Genetics 2001
4

An omics perspective on drug target discovery platforms.
Jussi Paananen, Vittorio Fortino. Brief Bioinform 2020
31
12

Cytoscape: a software environment for integrated models of biomolecular interaction networks.
Paul Shannon, Andrew Markiel, Owen Ozier, Nitin S Baliga, Jonathan T Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker. Genome Res 2003
4

Comprehensive functional genomic resource and integrative model for the human brain.
Daifeng Wang, Shuang Liu, Jonathan Warrell, Hyejung Won, Xu Shi, Fabio C P Navarro, Declan Clarke, Mengting Gu, Prashant Emani, Yucheng T Yang,[...]. Science 2018
291
3

A novel approach for data integration and disease subtyping.
Tin Nguyen, Rebecca Tagett, Diana Diaz, Sorin Draghici. Genome Res 2017
68
4

Integrative functional genomic analysis of human brain development and neuropsychiatric risks.
Mingfeng Li, Gabriel Santpere, Yuka Imamura Kawasawa, Oleg V Evgrafov, Forrest O Gulden, Sirisha Pochareddy, Susan M Sunkin, Zhen Li, Yurae Shin, Ying Zhu,[...]. Science 2018
256
3


Untargeted Metabolomics Strategies-Challenges and Emerging Directions.
Alexandra C Schrimpe-Rutledge, Simona G Codreanu, Stacy D Sherrod, John A McLean. J Am Soc Mass Spectrom 2016
344
3

The role of omics in the pathophysiology, diagnosis and treatment of non-alcoholic fatty liver disease.
Nikolaos Perakakis, Konstantinos Stefanakis, Christos S Mantzoros. Metabolism 2020
31
9

The Cancer Genome Atlas Pan-Cancer analysis project.
John N Weinstein, Eric A Collisson, Gordon B Mills, Kenna R Mills Shaw, Brad A Ozenberger, Kyle Ellrott, Ilya Shmulevich, Chris Sander, Joshua M Stuart. Nat Genet 2013
3

A reference map of the human binary protein interactome.
Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J Campos-Laborie, Benoit Charloteaux,[...]. Nature 2020
247
3

Assessment of network module identification across complex diseases.
Sarvenaz Choobdar, Mehmet E Ahsen, Jake Crawford, Mattia Tomasoni, Tao Fang, David Lamparter, Junyuan Lin, Benjamin Hescott, Xiaozhe Hu, Johnathan Mercer,[...]. Nat Methods 2019
73
4

Discovery of multi-dimensional modules by integrative analysis of cancer genomic data.
Shihua Zhang, Chun-Chi Liu, Wenyuan Li, Hui Shen, Peter W Laird, Xianghong Jasmine Zhou. Nucleic Acids Res 2012
163
3


The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog).
Jacqueline MacArthur, Emily Bowler, Maria Cerezo, Laurent Gil, Peggy Hall, Emma Hastings, Heather Junkins, Aoife McMahon, Annalisa Milano, Joannella Morales,[...]. Nucleic Acids Res 2017
3

Network medicine: a network-based approach to human disease.
Albert-László Barabási, Natali Gulbahce, Joseph Loscalzo. Nat Rev Genet 2011
3

Genome-wide polygenic scores for common diseases identify individuals with risk equivalent to monogenic mutations.
Amit V Khera, Mark Chaffin, Krishna G Aragam, Mary E Haas, Carolina Roselli, Seung Hoan Choi, Pradeep Natarajan, Eric S Lander, Steven A Lubitz, Patrick T Ellinor,[...]. Nat Genet 2018
990
3

Multi-omics integration-a comparison of unsupervised clustering methodologies.
Giulia Tini, Luca Marchetti, Corrado Priami, Marie-Pier Scott-Boyer. Brief Bioinform 2019
49
6

Drug development in the era of precision medicine.
Sarah A Dugger, Adam Platt, David B Goldstein. Nat Rev Drug Discov 2018
138
3


SALMON: Survival Analysis Learning With Multi-Omics Neural Networks on Breast Cancer.
Zhi Huang, Xiaohui Zhan, Shunian Xiang, Travis S Johnson, Bryan Helm, Christina Y Yu, Jie Zhang, Paul Salama, Maher Rizkalla, Zhi Han,[...]. Front Genet 2019
53
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.