A citation-based method for searching scientific literature

Christie K Campla, Hannah Breit, Lijin Dong, Jessica D Gumerson, Jerome E Roger, Anand Swaroop. Biol Open 2017
Times Cited: 5







List of co-cited articles
24 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Transcriptional regulation of photoreceptor development and homeostasis in the mammalian retina.
Anand Swaroop, Douglas Kim, Douglas Forrest. Nat Rev Neurosci 2010
353
40

Nrl is required for rod photoreceptor development.
A J Mears, M Kondo, P K Swain, Y Takada, R A Bush, T L Saunders, P A Sieving, A Swaroop. Nat Genet 2001
689
40

NRL-Regulated Transcriptome Dynamics of Developing Rod Photoreceptors.
Jung-Woong Kim, Hyun-Jin Yang, Matthew John Brooks, Lina Zelinger, Gökhan Karakülah, Norimoto Gotoh, Alexis Boleda, Linn Gieser, Felipe Giuste, Dustin Thad Whitaker,[...]. Cell Rep 2016
68
40


Retinopathy and attenuated circadian entrainment in Crx-deficient mice.
T Furukawa, E M Morrow, T Li, F C Davis, C L Cepko. Nat Genet 1999
421
40

Sumoylation of bZIP transcription factor NRL modulates target gene expression during photoreceptor differentiation.
Jerome E Roger, Jacob Nellissery, Douglas S Kim, Anand Swaroop. J Biol Chem 2010
36
40

Transcriptional regulation of rod photoreceptor homeostasis revealed by in vivo NRL targetome analysis.
Hong Hao, Douglas S Kim, Bernward Klocke, Kory R Johnson, Kairong Cui, Norimoto Gotoh, Chongzhi Zang, Janina Gregorski, Linn Gieser, Weiqun Peng,[...]. PLoS Genet 2012
77
40

Two transcription factors can direct three photoreceptor outcomes from rod precursor cells in mouse retinal development.
Lily Ng, Ailing Lu, Alok Swaroop, David S Sharlin, Anand Swaroop, Douglas Forrest. J Neurosci 2011
60
40

CRX ChIP-seq reveals the cis-regulatory architecture of mouse photoreceptors.
Joseph C Corbo, Karen A Lawrence, Marcus Karlstetter, Connie A Myers, Musa Abdelaziz, William Dirkes, Karin Weigelt, Martin Seifert, Vladimir Benes, Lars G Fritsche,[...]. Genome Res 2010
139
40

Molecular Anatomy of the Developing Human Retina.
Akina Hoshino, Rinki Ratnapriya, Matthew J Brooks, Vijender Chaitankar, Matthew S Wilken, Chi Zhang, Margaret R Starostik, Linn Gieser, Anna La Torre, Mario Nishio,[...]. Dev Cell 2017
125
40

Pias3-dependent SUMOylation directs rod photoreceptor development.
Akishi Onishi, Guang-Hua Peng, Chengda Hsu, Uel Alexis, Shiming Chen, Seth Blackshaw. Neuron 2009
91
40

The deSUMOylase SENP7 promotes chromatin relaxation for homologous recombination DNA repair.
Alexander J Garvin, Ruth M Densham, Sarah A Blair-Reid, Kenny M Pratt, Helen R Stone, Daniel Weekes, Kirsty J Lawrence, Joanna R Morris. EMBO Rep 2013
58
40

SUMO2 is essential while SUMO3 is dispensable for mouse embryonic development.
Liangli Wang, Carolien Wansleeben, Shengli Zhao, Pei Miao, Wulf Paschen, Wei Yang. EMBO Rep 2014
118
40


SUMO-specific protease 1 is critical for early lymphoid development through regulation of STAT5 activation.
Thang Van Nguyen, Pornpimon Angkasekwinai, Hong Dou, Feng-Ming Lin, Long-Sheng Lu, Jinke Cheng, Y Eugene Chin, Chen Dong, Edward T H Yeh. Mol Cell 2012
82
40

Tripartite motif-containing protein 28 is a small ubiquitin-related modifier E3 ligase and negative regulator of IFN regulatory factor 7.
Qiming Liang, Hongying Deng, Xiaojuan Li, Xianfang Wu, Qiyi Tang, Tsung-Hsien Chang, Hongzhuang Peng, Frank J Rauscher, Keiko Ozato, Fanxiu Zhu. J Immunol 2011
106
40

Cbx4 governs HIF-1α to potentiate angiogenesis of hepatocellular carcinoma by its SUMO E3 ligase activity.
Jie Li, Ying Xu, Xi-Dai Long, Wei Wang, Hui-Ke Jiao, Zhu Mei, Qian-Qian Yin, Li-Na Ma, Ai-Wu Zhou, Li-Shun Wang,[...]. Cancer Cell 2014
149
40


SUMO-specific protease 1 is essential for stabilization of HIF1alpha during hypoxia.
Jinke Cheng, Xunlei Kang, Sui Zhang, Edward T H Yeh. Cell 2007
468
40

The SUMO-specific isopeptidase SENP3 regulates MLL1/MLL2 methyltransferase complexes and controls osteogenic differentiation.
Arnab Nayak, Sandra Viale-Bouroncle, Christian Morsczeck, Stefan Muller. Mol Cell 2014
47
40

SUMO E3 ligase activity of TRIM proteins.
Y Chu, X Yang. Oncogene 2011
138
40

The SUMO pathway is essential for nuclear integrity and chromosome segregation in mice.
Karim Nacerddine, François Lehembre, Mantu Bhaumik, Jérôme Artus, Michel Cohen-Tannoudji, Charles Babinet, Pier Paolo Pandolfi, Anne Dejean. Dev Cell 2005
404
40

The implication of SUMO in intrinsic and innate immunity.
Zara Hannoun, Ghizlane Maarifi, Mounira K Chelbi-Alix. Cytokine Growth Factor Rev 2016
54
40

Sumo-1 function is dispensable in normal mouse development.
Fu-Ping Zhang, Laura Mikkonen, Jorma Toppari, Jorma J Palvimo, Irma Thesleff, Olli A Jänne. Mol Cell Biol 2008
130
40

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
20

Nuclear receptor Rev-erb alpha (Nr1d1) functions in concert with Nr2e3 to regulate transcriptional networks in the retina.
Nissa J Mollema, Yang Yuan, Austin S Jelcick, Andrew J Sachs, Désirée von Alpen, Daniel Schorderet, Pascal Escher, Neena B Haider. PLoS One 2011
51
20

Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain.
Alisa Mo, Eran A Mukamel, Fred P Davis, Chongyuan Luo, Gilbert L Henry, Serge Picard, Mark A Urich, Joseph R Nery, Terrence J Sejnowski, Ryan Lister,[...]. Neuron 2015
378
20

The orphan nuclear hormone receptor ERRbeta controls rod photoreceptor survival.
Akishi Onishi, Guang-Hua Peng, Erin M Poth, Daniel A Lee, Jichao Chen, Uel Alexis, Jimmy de Melo, Shiming Chen, Seth Blackshaw. Proc Natl Acad Sci U S A 2010
55
20

Efficient genome editing in the mouse brain by local delivery of engineered Cas9 ribonucleoprotein complexes.
Brett T Staahl, Madhurima Benekareddy, Claire Coulon-Bainier, Ashwin A Banfal, Stephen N Floor, Jennifer K Sabo, Cole Urnes, Gabriela Acevedo Munares, Anirvan Ghosh, Jennifer A Doudna. Nat Biotechnol 2017
170
20

The expanding family of FERM proteins.
Susana Moleirinho, Andrew Tilston-Lunel, Liselotte Angus, Frank Gunn-Moore, Paul A Reynolds. Biochem J 2013
42
20

G alpha selectivity and inhibitor function of the multiple GoLoco motif protein GPSM2/LGN.
Christopher R McCudden, Francis S Willard, Randall J Kimple, Christopher A Johnston, Melinda D Hains, Miller B Jones, David P Siderovski. Biochim Biophys Acta 2005
37
20

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
20

A Simple Grammar Defines Activating and Repressing cis-Regulatory Elements in Photoreceptors.
Michael A White, Jamie C Kwasnieski, Connie A Myers, Susan Q Shen, Joseph C Corbo, Barak A Cohen. Cell Rep 2016
33
20

Photoreceptor-specific nuclear receptor NR2E3 functions as a transcriptional activator in rod photoreceptors.
Hong Cheng, Hemant Khanna, Edwin C T Oh, David Hicks, Kenneth P Mitton, Anand Swaroop. Hum Mol Genet 2004
190
20

Preso1 dynamically regulates group I metabotropic glutamate receptors.
Jia-Hua Hu, Linlin Yang, Paul J Kammermeier, Chester G Moore, Paul R Brakeman, Jiancheng Tu, Shouyang Yu, Ronald S Petralia, Zhe Li, Ping-Wu Zhang,[...]. Nat Neurosci 2012
66
20


Regulation of gene expression by alternative promoters.
T A Ayoubi, W J Van De Ven. FASEB J 1996
268
20

Ubiquitously expressed genes participate in cell-specific functions via alternative promoter usage.
Guihai Feng, Man Tong, Baolong Xia, Guan-Zheng Luo, Meng Wang, Dongfang Xie, Haifeng Wan, Ying Zhang, Qi Zhou, Xiu-Jie Wang. EMBO Rep 2016
15
20

Of mice and CRISPR: The post-CRISPR future of the mouse as a model system for the human condition.
Edison T Liu, Ewelina Bolcun-Filas, David S Grass, Cathleen Lutz, Steve Murray, Lenny Shultz, Nadia Rosenthal. EMBO Rep 2017
21
20

New Otx2 mRNA isoforms expressed in the mouse brain.
Virginie Courtois, Gilles Chatelain, Zhi-Yan Han, Nicolas Le Novère, Gilbert Brun, Thomas Lamonerie. J Neurochem 2003
32
20

Multiple evidence strands suggest that there may be as few as 19,000 human protein-coding genes.
Iakes Ezkurdia, David Juan, Jose Manuel Rodriguez, Adam Frankish, Mark Diekhans, Jennifer Harrow, Jesus Vazquez, Alfonso Valencia, Michael L Tress. Hum Mol Genet 2014
283
20

LRIT1 Modulates Adaptive Changes in Synaptic Communication of Cone Photoreceptors.
Ignacio Sarria, Yan Cao, Yuchen Wang, Norianne T Ingram, Cesare Orlandi, Naomi Kamasawa, Alexander V Kolesnikov, Johan Pahlberg, Vladimir J Kefalov, Alapakkam P Sampath,[...]. Cell Rep 2018
14
20

Lrit1, a Retinal Transmembrane Protein, Regulates Selective Synapse Formation in Cone Photoreceptor Cells and Visual Acuity.
Akiko Ueno, Yoshihiro Omori, Yuko Sugita, Satoshi Watanabe, Taro Chaya, Takashi Kozuka, Tetsuo Kon, Satoyo Yoshida, Kenji Matsushita, Ryusuke Kuwahara,[...]. Cell Rep 2018
23
20


Cone-rod homeobox CRX controls presynaptic active zone formation in photoreceptors of mammalian retina.
Juthaporn Assawachananont, Soo-Young Kim, Koray D Kaya, Robert Fariss, Jerome E Roger, Anand Swaroop. Hum Mol Genet 2018
13
20


Selective interaction of AGS3 with G-proteins and the influence of AGS3 on the activation state of G-proteins.
M L Bernard, Y K Peterson, P Chung, J Jourdan, S M Lanier. J Biol Chem 2001
122
20

One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering.
Haoyi Wang, Hui Yang, Chikdu S Shivalila, Meelad M Dawlaty, Albert W Cheng, Feng Zhang, Rudolf Jaenisch. Cell 2013
20


Untranslated regions of mRNAs.
Flavio Mignone, Carmela Gissi, Sabino Liuni, Graziano Pesole. Genome Biol 2002
597
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.