Lauren A Laboissonniere, Gregory M Martin, Jillian J Goetz, Ran Bi, Brock Pope, Kallie Weinand, Laura Ellson, Diane Fru, Miranda Lee, Andrea K Wester, Peng Liu, Jeffrey M Trimarchi. J Comp Neurol 2017
Times Cited: 6
Times Cited: 6
Times Cited
Times Co-cited
Similarity
Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
83
Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics.
Karthik Shekhar, Sylvain W Lapan, Irene E Whitney, Nicholas M Tran, Evan Z Macosko, Monika Kowalczyk, Xian Adiconis, Joshua Z Levin, James Nemesh, Melissa Goldman,[...]. Cell 2016
Karthik Shekhar, Sylvain W Lapan, Irene E Whitney, Nicholas M Tran, Evan Z Macosko, Monika Kowalczyk, Xian Adiconis, Joshua Z Levin, James Nemesh, Melissa Goldman,[...]. Cell 2016
83
Molecular Anatomy of the Developing Human Retina.
Akina Hoshino, Rinki Ratnapriya, Matthew J Brooks, Vijender Chaitankar, Matthew S Wilken, Chi Zhang, Margaret R Starostik, Linn Gieser, Anna La Torre, Mario Nishio,[...]. Dev Cell 2017
Akina Hoshino, Rinki Ratnapriya, Matthew J Brooks, Vijender Chaitankar, Matthew S Wilken, Chi Zhang, Margaret R Starostik, Linn Gieser, Anna La Torre, Mario Nishio,[...]. Dev Cell 2017
66
The transcriptome of retinal Müller glial cells.
Karin Roesch, Ashutosh P Jadhav, Jeffrey M Trimarchi, Michael B Stadler, Botond Roska, Ben B Sun, Constance L Cepko. J Comp Neurol 2008
Karin Roesch, Ashutosh P Jadhav, Jeffrey M Trimarchi, Michael B Stadler, Botond Roska, Ben B Sun, Constance L Cepko. J Comp Neurol 2008
66
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.
Cole Trapnell, Davide Cacchiarelli, Jonna Grimsby, Prapti Pokharel, Shuqiang Li, Michael Morse, Niall J Lennon, Kenneth J Livak, Tarjei S Mikkelsen, John L Rinn. Nat Biotechnol 2014
Cole Trapnell, Davide Cacchiarelli, Jonna Grimsby, Prapti Pokharel, Shuqiang Li, Michael Morse, Niall J Lennon, Kenneth J Livak, Tarjei S Mikkelsen, John L Rinn. Nat Biotechnol 2014
66
Decomposing Cell Identity for Transfer Learning across Cellular Measurements, Platforms, Tissues, and Species.
Genevieve L Stein-O'Brien, Brian S Clark, Thomas Sherman, Cristina Zibetti, Qiwen Hu, Rachel Sealfon, Sheng Liu, Jiang Qian, Carlo Colantuoni, Seth Blackshaw,[...]. Cell Syst 2019
Genevieve L Stein-O'Brien, Brian S Clark, Thomas Sherman, Cristina Zibetti, Qiwen Hu, Rachel Sealfon, Sheng Liu, Jiang Qian, Carlo Colantuoni, Seth Blackshaw,[...]. Cell Syst 2019
66
Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes.
Bruce A Rheaume, Amyeo Jereen, Mohan Bolisetty, Muhammad S Sajid, Yue Yang, Kathleen Renna, Lili Sun, Paul Robson, Ephraim F Trakhtenberg. Nat Commun 2018
Bruce A Rheaume, Amyeo Jereen, Mohan Bolisetty, Muhammad S Sajid, Yue Yang, Kathleen Renna, Lili Sun, Paul Robson, Ephraim F Trakhtenberg. Nat Commun 2018
66
Genomic analysis of mouse retinal development.
Seth Blackshaw, Sanjiv Harpavat, Jeff Trimarchi, Li Cai, Haiyan Huang, Winston P Kuo, Griffin Weber, Kyungjoon Lee, Rebecca E Fraioli, Seo-Hee Cho,[...]. PLoS Biol 2004
Seth Blackshaw, Sanjiv Harpavat, Jeff Trimarchi, Li Cai, Haiyan Huang, Winston P Kuo, Griffin Weber, Kyungjoon Lee, Rebecca E Fraioli, Seo-Hee Cho,[...]. PLoS Biol 2004
50
How variable clones build an invariant retina.
Jie He, Gen Zhang, Alexandra D Almeida, Michel Cayouette, Benjamin D Simons, William A Harris. Neuron 2012
Jie He, Gen Zhang, Alexandra D Almeida, Michel Cayouette, Benjamin D Simons, William A Harris. Neuron 2012
50
Intrinsically different retinal progenitor cells produce specific types of progeny.
Connie Cepko. Nat Rev Neurosci 2014
Connie Cepko. Nat Rev Neurosci 2014
50
Reversed graph embedding resolves complex single-cell trajectories.
Xiaojie Qiu, Qi Mao, Ying Tang, Li Wang, Raghav Chawla, Hannah A Pliner, Cole Trapnell. Nat Methods 2017
Xiaojie Qiu, Qi Mao, Ying Tang, Li Wang, Raghav Chawla, Hannah A Pliner, Cole Trapnell. Nat Methods 2017
50
Individual retinal progenitor cells display extensive heterogeneity of gene expression.
Jeffrey M Trimarchi, Michael B Stadler, Constance L Cepko. PLoS One 2008
Jeffrey M Trimarchi, Michael B Stadler, Constance L Cepko. PLoS One 2008
50
The functional diversity of retinal ganglion cells in the mouse.
Tom Baden, Philipp Berens, Katrin Franke, Miroslav Román Rosón, Matthias Bethge, Thomas Euler. Nature 2016
Tom Baden, Philipp Berens, Katrin Franke, Miroslav Román Rosón, Matthias Bethge, Thomas Euler. Nature 2016
50
Development and diversification of retinal amacrine interneurons at single cell resolution.
Timothy J Cherry, Jeffrey M Trimarchi, Michael B Stadler, Constance L Cepko. Proc Natl Acad Sci U S A 2009
Timothy J Cherry, Jeffrey M Trimarchi, Michael B Stadler, Constance L Cepko. Proc Natl Acad Sci U S A 2009
50
Molecular heterogeneity of developing retinal ganglion and amacrine cells revealed through single cell gene expression profiling.
Jeffrey M Trimarchi, Michael B Stadler, Botond Roska, Nathan Billings, Ben Sun, Brandon Bartch, Constance L Cepko. J Comp Neurol 2007
Jeffrey M Trimarchi, Michael B Stadler, Botond Roska, Nathan Billings, Ben Sun, Brandon Bartch, Constance L Cepko. J Comp Neurol 2007
50
The types of retinal ganglion cells: current status and implications for neuronal classification.
Joshua R Sanes, Richard H Masland. Annu Rev Neurosci 2015
Joshua R Sanes, Richard H Masland. Annu Rev Neurosci 2015
50
Single-Cell Analysis of Human Retina Identifies Evolutionarily Conserved and Species-Specific Mechanisms Controlling Development.
Yufeng Lu, Fion Shiau, Wenyang Yi, Suying Lu, Qian Wu, Joel D Pearson, Alyssa Kallman, Suijuan Zhong, Thanh Hoang, Zhentao Zuo,[...]. Dev Cell 2020
Yufeng Lu, Fion Shiau, Wenyang Yi, Suying Lu, Qian Wu, Joel D Pearson, Alyssa Kallman, Suijuan Zhong, Thanh Hoang, Zhentao Zuo,[...]. Dev Cell 2020
50
Deconstructing Retinal Organoids: Single Cell RNA-Seq Reveals the Cellular Components of Human Pluripotent Stem Cell-Derived Retina.
Joseph Collin, Rachel Queen, Darin Zerti, Birthe Dorgau, Rafiqul Hussain, Jonathan Coxhead, Simon Cockell, Majlinda Lako. Stem Cells 2019
Joseph Collin, Rachel Queen, Darin Zerti, Birthe Dorgau, Rafiqul Hussain, Jonathan Coxhead, Simon Cockell, Majlinda Lako. Stem Cells 2019
50
Single-nuclei RNA-seq on human retinal tissue provides improved transcriptome profiling.
Qingnan Liang, Rachayata Dharmat, Leah Owen, Akbar Shakoor, Yumei Li, Sangbae Kim, Albert Vitale, Ivana Kim, Denise Morgan, Shaoheng Liang,[...]. Nat Commun 2019
Qingnan Liang, Rachayata Dharmat, Leah Owen, Akbar Shakoor, Yumei Li, Sangbae Kim, Albert Vitale, Ivana Kim, Denise Morgan, Shaoheng Liang,[...]. Nat Commun 2019
50
Lineage-independent determination of cell type in the embryonic mouse retina.
D L Turner, E Y Snyder, C L Cepko. Neuron 1990
D L Turner, E Y Snyder, C L Cepko. Neuron 1990
33
Genetic analysis of the homeodomain transcription factor Chx10 in the retina using a novel multifunctional BAC transgenic mouse reporter.
Sheldon Rowan, Constance L Cepko. Dev Biol 2004
Sheldon Rowan, Constance L Cepko. Dev Biol 2004
33
Otx2 and Onecut1 promote the fates of cone photoreceptors and horizontal cells and repress rod photoreceptors.
Mark M Emerson, Natalia Surzenko, Jillian J Goetz, Jeffrey Trimarchi, Constance L Cepko. Dev Cell 2013
Mark M Emerson, Natalia Surzenko, Jillian J Goetz, Jeffrey Trimarchi, Constance L Cepko. Dev Cell 2013
33
DNER and NFIA are expressed by developing and mature AII amacrine cells in the mouse retina.
Patrick W Keeley, Benjamin E Reese. J Comp Neurol 2018
Patrick W Keeley, Benjamin E Reese. J Comp Neurol 2018
33
Functional roles of Otx2 transcription factor in postnatal mouse retinal development.
Chieko Koike, Akihiro Nishida, Shinji Ueno, Hiromitsu Saito, Rikako Sanuki, Shigeru Sato, Akiko Furukawa, Shinichi Aizawa, Isao Matsuo, Noboru Suzuki,[...]. Mol Cell Biol 2007
Chieko Koike, Akihiro Nishida, Shinji Ueno, Hiromitsu Saito, Rikako Sanuki, Shigeru Sato, Akiko Furukawa, Shinichi Aizawa, Isao Matsuo, Noboru Suzuki,[...]. Mol Cell Biol 2007
33
A conserved regulatory logic controls temporal identity in mouse neural progenitors.
Pierre Mattar, Johan Ericson, Seth Blackshaw, Michel Cayouette. Neuron 2015
Pierre Mattar, Johan Ericson, Seth Blackshaw, Michel Cayouette. Neuron 2015
33
Multiple intrinsic factors act in concert with Lhx2 to direct retinal gliogenesis.
Jimmy de Melo, Brian S Clark, Seth Blackshaw. Sci Rep 2016
Jimmy de Melo, Brian S Clark, Seth Blackshaw. Sci Rep 2016
33
Transcription factor Olig2 defines subpopulations of retinal progenitor cells biased toward specific cell fates.
Brian P Hafler, Natalia Surzenko, Kevin T Beier, Claudio Punzo, Jeffrey M Trimarchi, Jennifer H Kong, Constance L Cepko. Proc Natl Acad Sci U S A 2012
Brian P Hafler, Natalia Surzenko, Kevin T Beier, Claudio Punzo, Jeffrey M Trimarchi, Jennifer H Kong, Constance L Cepko. Proc Natl Acad Sci U S A 2012
33
Otx2 homeobox gene controls retinal photoreceptor cell fate and pineal gland development.
Akihiro Nishida, Akiko Furukawa, Chieko Koike, Yasuo Tano, Shinichi Aizawa, Isao Matsuo, Takahisa Furukawa. Nat Neurosci 2003
Akihiro Nishida, Akiko Furukawa, Chieko Koike, Yasuo Tano, Shinichi Aizawa, Isao Matsuo, Takahisa Furukawa. Nat Neurosci 2003
33
Massively parallel digital transcriptional profiling of single cells.
Grace X Y Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu,[...]. Nat Commun 2017
Grace X Y Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu,[...]. Nat Commun 2017
33
Birthdays of retinal amacrine cell subtypes are systematically related to their molecular identity and soma position.
P Emanuela Voinescu, Jeremy N Kay, Joshua R Sanes. J Comp Neurol 2009
P Emanuela Voinescu, Jeremy N Kay, Joshua R Sanes. J Comp Neurol 2009
33
Expression Profiling of Developing Zebrafish Retinal Cells.
Madelyn Mullally, Caitlin Albrecht, Mary Horton, Lauren A Laboissonniere, Jillian J Goetz, Rebecca Chowdhury, Alicia Manning, Andrea K Wester, Quinton Bose, Jeffrey M Trimarchi. Zebrafish 2016
Madelyn Mullally, Caitlin Albrecht, Mary Horton, Lauren A Laboissonniere, Jillian J Goetz, Rebecca Chowdhury, Alicia Manning, Andrea K Wester, Quinton Bose, Jeffrey M Trimarchi. Zebrafish 2016
40
Temporal fate specification and neural progenitor competence during development.
Minoree Kohwi, Chris Q Doe. Nat Rev Neurosci 2013
Minoree Kohwi, Chris Q Doe. Nat Rev Neurosci 2013
33
Ikaros confers early temporal competence to mouse retinal progenitor cells.
Jimmy Elliott, Christine Jolicoeur, Vasanth Ramamurthy, Michel Cayouette. Neuron 2008
Jimmy Elliott, Christine Jolicoeur, Vasanth Ramamurthy, Michel Cayouette. Neuron 2008
33
Ascl1 expression defines a subpopulation of lineage-restricted progenitors in the mammalian retina.
Joseph A Brzezinski, Euiseok J Kim, Jane E Johnson, Thomas A Reh. Development 2011
Joseph A Brzezinski, Euiseok J Kim, Jane E Johnson, Thomas A Reh. Development 2011
33
Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells.
Monika S Kowalczyk, Itay Tirosh, Dirk Heckl, Tata Nageswara Rao, Atray Dixit, Brian J Haas, Rebekka K Schneider, Amy J Wagers, Benjamin L Ebert, Aviv Regev. Genome Res 2015
Monika S Kowalczyk, Itay Tirosh, Dirk Heckl, Tata Nageswara Rao, Atray Dixit, Brian J Haas, Rebekka K Schneider, Amy J Wagers, Benjamin L Ebert, Aviv Regev. Genome Res 2015
33
A common progenitor for neurons and glia persists in rat retina late in development.
D L Turner, C L Cepko. Nature 1987
D L Turner, C L Cepko. Nature 1987
33
The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis.
Issam Aldiri, Beisi Xu, Lu Wang, Xiang Chen, Daniel Hiler, Lyra Griffiths, Marc Valentine, Abbas Shirinifard, Suresh Thiagarajan, Andras Sablauer,[...]. Neuron 2017
Issam Aldiri, Beisi Xu, Lu Wang, Xiang Chen, Daniel Hiler, Lyra Griffiths, Marc Valentine, Abbas Shirinifard, Suresh Thiagarajan, Andras Sablauer,[...]. Neuron 2017
33
Reconstruction of rat retinal progenitor cell lineages in vitro reveals a surprising degree of stochasticity in cell fate decisions.
Francisco L A F Gomes, Gen Zhang, Felix Carbonell, José A Correa, William A Harris, Benjamin D Simons, Michel Cayouette. Development 2011
Francisco L A F Gomes, Gen Zhang, Felix Carbonell, José A Correa, William A Harris, Benjamin D Simons, Michel Cayouette. Development 2011
33
Blimp1 suppresses Chx10 expression in differentiating retinal photoreceptor precursors to ensure proper photoreceptor development.
Kimiko Katoh, Yoshihiro Omori, Akishi Onishi, Shigeru Sato, Mineo Kondo, Takahisa Furukawa. J Neurosci 2010
Kimiko Katoh, Yoshihiro Omori, Akishi Onishi, Shigeru Sato, Mineo Kondo, Takahisa Furukawa. J Neurosci 2010
33
Math5 defines the ganglion cell competence state in a subpopulation of retinal progenitor cells exiting the cell cycle.
Joseph A Brzezinski, Lev Prasov, Tom Glaser. Dev Biol 2012
Joseph A Brzezinski, Lev Prasov, Tom Glaser. Dev Biol 2012
33
Identification of molecular markers of bipolar cells in the murine retina.
Douglas S Kim, Sarah E Ross, Jeffrey M Trimarchi, John Aach, Michael E Greenberg, Constance L Cepko. J Comp Neurol 2008
Douglas S Kim, Sarah E Ross, Jeffrey M Trimarchi, John Aach, Michael E Greenberg, Constance L Cepko. J Comp Neurol 2008
33
Molecular identification of a retinal cell type that responds to upward motion.
In-Jung Kim, Yifeng Zhang, Masahito Yamagata, Markus Meister, Joshua R Sanes. Nature 2008
In-Jung Kim, Yifeng Zhang, Masahito Yamagata, Markus Meister, Joshua R Sanes. Nature 2008
33
Molecular codes for cell type specification in Brn3 retinal ganglion cells.
Szilard Sajgo, Miruna Georgiana Ghinia, Matthew Brooks, Friedrich Kretschmer, Katherine Chuang, Suja Hiriyanna, Zhijian Wu, Octavian Popescu, Tudor Constantin Badea. Proc Natl Acad Sci U S A 2017
Szilard Sajgo, Miruna Georgiana Ghinia, Matthew Brooks, Friedrich Kretschmer, Katherine Chuang, Suja Hiriyanna, Zhijian Wu, Octavian Popescu, Tudor Constantin Badea. Proc Natl Acad Sci U S A 2017
33
T-box transcription regulator Tbr2 is essential for the formation and maintenance of Opn4/melanopsin-expressing intrinsically photosensitive retinal ganglion cells.
Chai-An Mao, Hongyan Li, Zhijing Zhang, Takae Kiyama, Satchidananda Panda, Samer Hattar, Christophe P Ribelayga, Stephen L Mills, Steven W Wang. J Neurosci 2014
Chai-An Mao, Hongyan Li, Zhijing Zhang, Takae Kiyama, Satchidananda Panda, Samer Hattar, Christophe P Ribelayga, Stephen L Mills, Steven W Wang. J Neurosci 2014
33
Subtype-specific regeneration of retinal ganglion cells following axotomy: effects of osteopontin and mTOR signaling.
Xin Duan, Mu Qiao, Fengfeng Bei, In-Jung Kim, Zhigang He, Joshua R Sanes. Neuron 2015
Xin Duan, Mu Qiao, Fengfeng Bei, In-Jung Kim, Zhigang He, Joshua R Sanes. Neuron 2015
33
Digital Museum of Retinal Ganglion Cells with Dense Anatomy and Physiology.
J Alexander Bae, Shang Mu, Jinseop S Kim, Nicholas L Turner, Ignacio Tartavull, Nico Kemnitz, Chris S Jordan, Alex D Norton, William M Silversmith, Rachel Prentki,[...]. Cell 2018
J Alexander Bae, Shang Mu, Jinseop S Kim, Nicholas L Turner, Ignacio Tartavull, Nico Kemnitz, Chris S Jordan, Alex D Norton, William M Silversmith, Rachel Prentki,[...]. Cell 2018
33
Integration of electrophysiological recordings with single-cell RNA-seq data identifies neuronal subtypes.
János Fuzik, Amit Zeisel, Zoltán Máté, Daniela Calvigioni, Yuchio Yanagawa, Gábor Szabó, Sten Linnarsson, Tibor Harkany. Nat Biotechnol 2016
János Fuzik, Amit Zeisel, Zoltán Máté, Daniela Calvigioni, Yuchio Yanagawa, Gábor Szabó, Sten Linnarsson, Tibor Harkany. Nat Biotechnol 2016
33
Spatial reconstruction of single-cell gene expression data.
Rahul Satija, Jeffrey A Farrell, David Gennert, Alexander F Schier, Aviv Regev. Nat Biotechnol 2015
Rahul Satija, Jeffrey A Farrell, David Gennert, Alexander F Schier, Aviv Regev. Nat Biotechnol 2015
33
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.