A citation-based method for searching scientific literature

Masahiro Yamashita, Alan N Engelman. Trends Microbiol 2017
Times Cited: 61







List of co-cited articles
836 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


HIV-1 capsid: the multifaceted key player in HIV-1 infection.
Edward M Campbell, Thomas J Hope. Nat Rev Microbiol 2015
215
60

Host cofactors and pharmacologic ligands share an essential interface in HIV-1 capsid that is lost upon disassembly.
Amanda J Price, David A Jacques, William A McEwan, Adam J Fletcher, Sebastian Essig, Jason W Chin, Upul D Halambage, Christopher Aiken, Leo C James. PLoS Pathog 2014
157
52

Structural basis of HIV-1 capsid recognition by PF74 and CPSF6.
Akash Bhattacharya, Steven L Alam, Thomas Fricke, Kaneil Zadrozny, Jaroslaw Sedzicki, Alexander B Taylor, Borries Demeler, Owen Pornillos, Barbie K Ganser-Pornillos, Felipe Diaz-Griffero,[...]. Proc Natl Acad Sci U S A 2014
140
49

Flexible use of nuclear import pathways by HIV-1.
KyeongEun Lee, Zandrea Ambrose, Thomas D Martin, Ilker Oztop, Alok Mulky, John G Julias, Nick Vandegraaff, Joerg G Baumann, Rui Wang, Wendy Yuen,[...]. Cell Host Microbe 2010
302
45


HIV-1 capsid-cyclophilin interactions determine nuclear import pathway, integration targeting and replication efficiency.
Torsten Schaller, Karen E Ocwieja, Jane Rasaiyaah, Amanda J Price, Troy L Brady, Shoshannah L Roth, Stéphane Hué, Adam J Fletcher, KyeongEun Lee, Vineet N KewalRamani,[...]. PLoS Pathog 2011
316
40


Capsid-CPSF6 Interaction Licenses Nuclear HIV-1 Trafficking to Sites of Viral DNA Integration.
Vasudevan Achuthan, Jill M Perreira, Gregory A Sowd, Maritza Puray-Chavez, William M McDougall, Adriana Paulucci-Holthauzen, Xiaolin Wu, Hind J Fadel, Eric M Poeschla, Asha S Multani,[...]. Cell Host Microbe 2018
78
40

A critical role for alternative polyadenylation factor CPSF6 in targeting HIV-1 integration to transcriptionally active chromatin.
Gregory A Sowd, Erik Serrao, Hao Wang, Weifeng Wang, Hind J Fadel, Eric M Poeschla, Alan N Engelman. Proc Natl Acad Sci U S A 2016
125
39

HIV-1 evades innate immune recognition through specific cofactor recruitment.
Jane Rasaiyaah, Choon Ping Tan, Adam J Fletcher, Amanda J Price, Caroline Blondeau, Laura Hilditch, David A Jacques, David L Selwood, Leo C James, Mahdad Noursadeghi,[...]. Nature 2013
295
37


Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics.
Gongpu Zhao, Juan R Perilla, Ernest L Yufenyuy, Xin Meng, Bo Chen, Jiying Ning, Jinwoo Ahn, Angela M Gronenborn, Klaus Schulten, Christopher Aiken,[...]. Nature 2013
443
36

HIV capsid is a tractable target for small molecule therapeutic intervention.
Wade S Blair, Chris Pickford, Stephen L Irving, David G Brown, Marie Anderson, Richard Bazin, Joan Cao, Giuseppe Ciaramella, Jason Isaacson, Lynn Jackson,[...]. PLoS Pathog 2010
184
34

Quantitative microscopy of functional HIV post-entry complexes reveals association of replication with the viral capsid.
Ke Peng, Walter Muranyi, Bärbel Glass, Vibor Laketa, Stephen R Yant, Luong Tsai, Tomas Cihlar, Barbara Müller, Hans-Georg Kräusslich. Elife 2014
119
34

CPSF6 defines a conserved capsid interface that modulates HIV-1 replication.
Amanda J Price, Adam J Fletcher, Torsten Schaller, Tom Elliott, KyeongEun Lee, Vineet N KewalRamani, Jason W Chin, Greg J Towers, Leo C James. PLoS Pathog 2012
163
32

Formation of a human immunodeficiency virus type 1 core of optimal stability is crucial for viral replication.
Brett M Forshey, Uta von Schwedler, Wesley I Sundquist, Christopher Aiken. J Virol 2002
384
32

HIV-1 nuclear import in macrophages is regulated by CPSF6-capsid interactions at the nuclear pore complex.
David Alejandro Bejarano, Ke Peng, Vibor Laketa, Kathleen Börner, K Laurence Jost, Bojana Lucic, Bärbel Glass, Marina Lusic, Barbara Müller, Hans-Georg Kräusslich. Elife 2019
77
32

STRUCTURAL VIROLOGY. X-ray crystal structures of native HIV-1 capsid protein reveal conformational variability.
Anna T Gres, Karen A Kirby, Vineet N KewalRamani, John J Tanner, Owen Pornillos, Stefan G Sarafianos. Science 2015
130
31

HIV-1 uncoats in the nucleus near sites of integration.
Ryan C Burdick, Chenglei Li, MohamedHusen Munshi, Jonathan M O Rawson, Kunio Nagashima, Wei-Shau Hu, Vinay K Pathak. Proc Natl Acad Sci U S A 2020
82
31

X-ray structures of the hexameric building block of the HIV capsid.
Owen Pornillos, Barbie K Ganser-Pornillos, Brian N Kelly, Yuanzi Hua, Frank G Whitby, C David Stout, Wesley I Sundquist, Christopher P Hill, Mark Yeager. Cell 2009
357
29

Direct Visualization of HIV-1 Replication Intermediates Shows that Capsid and CPSF6 Modulate HIV-1 Intra-nuclear Invasion and Integration.
Christopher R Chin, Jill M Perreira, George Savidis, Jocelyn M Portmann, Aaron M Aker, Eric M Feeley, Miles C Smith, Abraham L Brass. Cell Rep 2015
92
29

Atomic-level modelling of the HIV capsid.
Owen Pornillos, Barbie K Ganser-Pornillos, Mark Yeager. Nature 2011
251
29

The structure and flexibility of conical HIV-1 capsids determined within intact virions.
Simone Mattei, Bärbel Glass, Wim J H Hagen, Hans-Georg Kräusslich, John A G Briggs. Science 2016
118
29

Small-molecule inhibition of human immunodeficiency virus type 1 infection by virus capsid destabilization.
Jiong Shi, Jing Zhou, Vaibhav B Shah, Christopher Aiken, Kevin Whitby. J Virol 2011
167
27

Early cytoplasmic uncoating is associated with infectivity of HIV-1.
João I Mamede, Gianguido C Cianci, Meegan R Anderson, Thomas J Hope. Proc Natl Acad Sci U S A 2017
68
27

Human MX2 is an interferon-induced post-entry inhibitor of HIV-1 infection.
Caroline Goujon, Olivier Moncorgé, Hélène Bauby, Tomas Doyle, Christopher C Ward, Torsten Schaller, Stéphane Hué, Wendy S Barclay, Reiner Schulz, Michael H Malim. Nature 2013
370
27

Assembly and analysis of conical models for the HIV-1 core.
B K Ganser, S Li, V Y Klishko, J T Finch, W I Sundquist. Science 1999
456
27

Dynamics and regulation of nuclear import and nuclear movements of HIV-1 complexes.
Ryan C Burdick, Krista A Delviks-Frankenberry, Jianbo Chen, Sanath K Janaka, Jaya Sastri, Wei-Shau Hu, Vinay K Pathak. PLoS Pathog 2017
61
26

HIV-1 assembly, budding, and maturation.
Wesley I Sundquist, Hans-Georg Kräusslich. Cold Spring Harb Perspect Med 2012
447
26

Time-Resolved Imaging of Single HIV-1 Uncoating In Vitro and in Living Cells.
Ashwanth C Francis, Mariana Marin, Jiong Shi, Christopher Aiken, Gregory B Melikyan. PLoS Pathog 2016
70
26

HIV-1 uses dynamic capsid pores to import nucleotides and fuel encapsidated DNA synthesis.
David A Jacques, William A McEwan, Laura Hilditch, Amanda J Price, Greg J Towers, Leo C James. Nature 2016
109
26

MX2 is an interferon-induced inhibitor of HIV-1 infection.
Melissa Kane, Shalini S Yadav, Julia Bitzegeio, Sebla B Kutluay, Trinity Zang, Sam J Wilson, John W Schoggins, Charles M Rice, Masahiro Yamashita, Theodora Hatziioannou,[...]. Nature 2013
317
26

Capsid-CPSF6 Interaction Is Dispensable for HIV-1 Replication in Primary Cells but Is Selected during Virus Passage In Vivo.
Akatsuki Saito, Matthew S Henning, Erik Serrao, Brittany N Dubose, Samantha Teng, Jing Huang, Xiangming Li, Namiko Saito, Saumendra Prasad Roy, Mohammad Adnan Siddiqui,[...]. J Virol 2016
38
39

HIV-1 assembly, release and maturation.
Eric O Freed. Nat Rev Microbiol 2015
254
24

HIV-1 capsid is involved in post-nuclear entry steps.
Nan-Yu Chen, Lihong Zhou, Paul J Gane, Silvana Opp, Neil J Ball, Giuseppe Nicastro, Madeleine Zufferey, Cindy Buffone, Jeremy Luban, David Selwood,[...]. Retrovirology 2016
41
36

KIF5B and Nup358 Cooperatively Mediate the Nuclear Import of HIV-1 during Infection.
Adarsh Dharan, Sarah Talley, Abhishek Tripathi, João I Mamede, Matthias Majetschak, Thomas J Hope, Edward M Campbell. PLoS Pathog 2016
57
24

Human immunodeficiency virus type 1 Gag protein binds to cyclophilins A and B.
J Luban, K L Bossolt, E K Franke, G V Kalpana, S P Goff. Cell 1993
672
22

Crystal structure of human cyclophilin A bound to the amino-terminal domain of HIV-1 capsid.
T R Gamble, F F Vajdos, S Yoo, D K Worthylake, M Houseweart, W I Sundquist, C P Hill. Cell 1996
578
22

Complementary assays reveal a relationship between HIV-1 uncoating and reverse transcription.
Amy E Hulme, Omar Perez, Thomas J Hope. Proc Natl Acad Sci U S A 2011
176
22

HIV-1 capsids bind and exploit the kinesin-1 adaptor FEZ1 for inward movement to the nucleus.
Viacheslav Malikov, Eveline Santos da Silva, Vladimir Jovasevic, Geoffrey Bennett, Daniel A de Souza Aranha Vieira, Bianca Schulte, Felipe Diaz-Griffero, Derek Walsh, Mojgan H Naghavi. Nat Commun 2015
117
22

Nuclear pore heterogeneity influences HIV-1 infection and the antiviral activity of MX2.
Melissa Kane, Stephanie V Rebensburg, Matthew A Takata, Trinity M Zang, Masahiro Yamashita, Mamuka Kvaratskhelia, Paul D Bieniasz. Elife 2018
50
28

The cytoplasmic body component TRIM5alpha restricts HIV-1 infection in Old World monkeys.
Matthew Stremlau, Christopher M Owens, Michel J Perron, Michael Kiessling, Patrick Autissier, Joseph Sodroski. Nature 2004
22

Inhibitors of the HIV-1 capsid, a target of opportunity.
Stephanie K Carnes, Jonathan H Sheehan, Christopher Aiken. Curr Opin HIV AIDS 2018
49
28

Nup153 and Nup98 bind the HIV-1 core and contribute to the early steps of HIV-1 replication.
Francesca Di Nunzio, Thomas Fricke, Annarita Miccio, Jose Carlos Valle-Casuso, Patricio Perez, Philippe Souque, Ermanno Rizzi, Marco Severgnini, Fulvio Mavilio, Pierre Charneau,[...]. Virology 2013
99
21

Reverse Transcription Mechanically Initiates HIV-1 Capsid Disassembly.
Sanela Rankovic, Janani Varadarajan, Ruben Ramalho, Christopher Aiken, Itay Rousso. J Virol 2017
55
23

Extreme genetic fragility of the HIV-1 capsid.
Suzannah J Rihn, Sam J Wilson, Nick J Loman, Mudathir Alim, Saskia E Bakker, David Bhella, Robert J Gifford, Frazer J Rixon, Paul D Bieniasz. PLoS Pathog 2013
120
21



MxB binds to the HIV-1 core and prevents the uncoating process of HIV-1.
Thomas Fricke, Tommy E White, Bianca Schulte, Daniel A de Souza Aranha Vieira, Adarsh Dharan, Edward M Campbell, Alberto Brandariz-Nuñez, Felipe Diaz-Griffero. Retrovirology 2014
113
21

IP6 is an HIV pocket factor that prevents capsid collapse and promotes DNA synthesis.
Donna L Mallery, Chantal L Márquez, William A McEwan, Claire F Dickson, David A Jacques, Madhanagopal Anandapadamanaban, Katsiaryna Bichel, Gregory J Towers, Adolfo Saiardi, Till Böcking,[...]. Elife 2018
71
21


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.