A citation-based method for searching scientific literature

Constance L Cepko. Annu Rev Vis Sci 2015
Times Cited: 18







List of co-cited articles
119 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Transcriptional regulation of photoreceptor development and homeostasis in the mammalian retina.
Anand Swaroop, Douglas Kim, Douglas Forrest. Nat Rev Neurosci 2010
322
38


Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
27

Crx, a novel Otx-like paired-homeodomain protein, binds to and transactivates photoreceptor cell-specific genes.
S Chen, Q L Wang, Z Nie, H Sun, G Lennon, N G Copeland, D J Gilbert, N A Jenkins, D J Zack. Neuron 1997
536
27

Nrl is required for rod photoreceptor development.
A J Mears, M Kondo, P K Swain, Y Takada, R A Bush, T L Saunders, P A Sieving, A Swaroop. Nat Genet 2001
655
27


Timing and topography of cell genesis in the rat retina.
David H Rapaport, Lily L Wong, Eric D Wood, Douglas Yasumura, Matthew M LaVail. J Comp Neurol 2004
263
22

Photoreceptor cell fate specification in vertebrates.
Joseph A Brzezinski, Thomas A Reh. Development 2015
75
22


Otx2 homeobox gene controls retinal photoreceptor cell fate and pineal gland development.
Akihiro Nishida, Akiko Furukawa, Chieko Koike, Yasuo Tano, Shinichi Aizawa, Isao Matsuo, Takahisa Furukawa. Nat Neurosci 2003
400
22


Photoreceptor Fate Determination in the Vertebrate Retina.
Sui Wang, Constance L Cepko. Invest Ophthalmol Vis Sci 2016
10
30

Recurrent mutation in the first zinc finger of the orphan nuclear receptor NR2E3 causes autosomal dominant retinitis pigmentosa.
Frauke Coppieters, Bart P Leroy, Diane Beysen, Jan Hellemans, Karolien De Bosscher, Guy Haegeman, Kirsten Robberecht, Wim Wuyts, Paul J Coucke, Elfride De Baere. Am J Hum Genet 2007
80
16


Cone-rod dystrophy due to mutations in a novel photoreceptor-specific homeobox gene (CRX) essential for maintenance of the photoreceptor.
C L Freund, C Y Gregory-Evans, T Furukawa, M Papaioannou, J Looser, L Ploder, J Bellingham, D Ng, J A Herbrick, A Duncan,[...]. Cell 1997
434
16

Mutations in NR2E3 can cause dominant or recessive retinal degenerations in the same family.
Pascal Escher, Peter Gouras, Raphaël Roduit, Leila Tiab, Sylvain Bolay, Tania Delarive, Shiming Chen, Chih-Cheng Tsai, Masanori Hayashi, Jana Zernant,[...]. Hum Mutat 2009
47
16


Recruitment of Rod Photoreceptors from Short-Wavelength-Sensitive Cones during the Evolution of Nocturnal Vision in Mammals.
Jung-Woong Kim, Hyun-Jin Yang, Adam Phillip Oel, Matthew John Brooks, Li Jia, David Charles Plachetzki, Wei Li, William Ted Allison, Anand Swaroop. Dev Cell 2016
62
16

Functional roles of Otx2 transcription factor in postnatal mouse retinal development.
Chieko Koike, Akihiro Nishida, Shinji Ueno, Hiromitsu Saito, Rikako Sanuki, Shigeru Sato, Akiko Furukawa, Shinichi Aizawa, Isao Matsuo, Noboru Suzuki,[...]. Mol Cell Biol 2007
126
16

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics.
Karthik Shekhar, Sylvain W Lapan, Irene E Whitney, Nicholas M Tran, Evan Z Macosko, Monika Kowalczyk, Xian Adiconis, Joshua Z Levin, James Nemesh, Melissa Goldman,[...]. Cell 2016
457
16

Number and distribution of mouse retinal cone photoreceptors: differences between an albino (Swiss) and a pigmented (C57/BL6) strain.
Arturo Ortín-Martínez, Francisco M Nadal-Nicolás, Manuel Jiménez-López, Juan J Alburquerque-Béjar, Leticia Nieto-López, Diego García-Ayuso, Maria P Villegas-Pérez, Manuel Vidal-Sanz, Marta Agudo-Barriuso. PLoS One 2014
67
16


Photoreceptor-specific nuclear receptor NR2E3 functions as a transcriptional activator in rod photoreceptors.
Hong Cheng, Hemant Khanna, Edwin C T Oh, David Hicks, Kenneth P Mitton, Anand Swaroop. Hum Mol Genet 2004
176
16

Retinoid X receptor (gamma) is necessary to establish the S-opsin gradient in cone photoreceptors of the developing mouse retina.
Melanie R Roberts, Anita Hendrickson, Christopher R McGuire, Thomas A Reh. Invest Ophthalmol Vis Sci 2005
147
16

The origin and evolution of cell types.
Detlev Arendt, Jacob M Musser, Clare V H Baker, Aviv Bergman, Connie Cepko, Douglas H Erwin, Mihaela Pavlicev, Gerhard Schlosser, Stefanie Widder, Manfred D Laubichler,[...]. Nat Rev Genet 2016
212
16


HTSeq--a Python framework to work with high-throughput sequencing data.
Simon Anders, Paul Theodor Pyl, Wolfgang Huber. Bioinformatics 2015
16

Foxn4 controls the genesis of amacrine and horizontal cells by retinal progenitors.
Shengguo Li, Zeqian Mo, Xuejie Yang, Sandy M Price, Michael M Shen, Mengqing Xiang. Neuron 2004
177
16

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.
Cole Trapnell, Brian A Williams, Geo Pertea, Ali Mortazavi, Gordon Kwan, Marijke J van Baren, Steven L Salzberg, Barbara J Wold, Lior Pachter. Nat Biotechnol 2010
11



Leber congenital amaurosis: comprehensive survey of the genetic heterogeneity, refinement of the clinical definition, and genotype-phenotype correlations as a strategy for molecular diagnosis.
Sylvain Hanein, Isabelle Perrault, Sylvie Gerber, Gaëlle Tanguy, Fabienne Barbet, Dominique Ducroq, Patrick Calvas, Hélène Dollfus, Christian Hamel, Tuija Lopponen,[...]. Hum Mutat 2004
246
11

Shared mutations in NR2E3 in enhanced S-cone syndrome, Goldmann-Favre syndrome, and many cases of clumped pigmentary retinal degeneration.
Dror Sharon, Michael A Sandberg, Rafael C Caruso, Eliot L Berson, Thaddeus P Dryja. Arch Ophthalmol 2003
122
11

Ablation of retinal horizontal cells from adult mice leads to rod degeneration and remodeling in the outer retina.
Stephan Sonntag, Karin Dedek, Birthe Dorgau, Konrad Schultz, Karl-Friedrich Schmidt, Kerstin Cimiotti, Reto Weiler, Siegrid Löwel, Klaus Willecke, Ulrike Janssen-Bienhold. J Neurosci 2012
35
11

Dkk3-Cre BAC transgenic mouse line: a tool for highly efficient gene deletion in retinal progenitor cells.
Shigeru Sato, Tatsuya Inoue, Koji Terada, Isao Matsuo, Shinichi Aizawa, Yasuo Tano, Takashi Fujikado, Takahisa Furukawa. Genesis 2007
65
11

Next-generation sequencing facilitates quantitative analysis of wild-type and Nrl(-/-) retinal transcriptomes.
Matthew J Brooks, Harsha K Rajasimha, Jerome E Roger, Anand Swaroop. Mol Vis 2011
80
11

TRPM1 is mutated in patients with autosomal-recessive complete congenital stationary night blindness.
Isabelle Audo, Susanne Kohl, Bart P Leroy, Francis L Munier, Xavier Guillonneau, Saddek Mohand-Saïd, Kinga Bujakowska, Emeline F Nandrot, Birgit Lorenz, Markus Preising,[...]. Am J Hum Genet 2009
155
11

Self-organizing optic-cup morphogenesis in three-dimensional culture.
Mototsugu Eiraku, Nozomu Takata, Hiroki Ishibashi, Masako Kawada, Eriko Sakakura, Satoru Okuda, Kiyotoshi Sekiguchi, Taiji Adachi, Yoshiki Sasai. Nature 2011
11


Retinoic acid-dependent eye morphogenesis is orchestrated by neural crest cells.
Nicolas Matt, Valérie Dupé, Jean-Marie Garnier, Christine Dennefeld, Pierre Chambon, Manuel Mark, Norbert B Ghyselinck. Development 2005
181
11

Analysis of thyroid response element activity during retinal development.
Nathan A Billings, Mark M Emerson, Constance L Cepko. PLoS One 2010
21
11

Ocular retardation mouse caused by Chx10 homeobox null allele: impaired retinal progenitor proliferation and bipolar cell differentiation.
M Burmeister, J Novak, M Y Liang, S Basu, L Ploder, N L Hawes, D Vidgen, F Hoover, D Goldman, V I Kalnins,[...]. Nat Genet 1996
407
11

Development of Retinal Layers in Prenatal Human Retina.
Anita Hendrickson. Am J Ophthalmol 2016
35
11


Molecular analysis of the amphioxus frontal eye unravels the evolutionary origin of the retina and pigment cells of the vertebrate eye.
Pavel Vopalensky, Jiri Pergner, Michaela Liegertova, Elia Benito-Gutierrez, Detlev Arendt, Zbynek Kozmik. Proc Natl Acad Sci U S A 2012
76
11

A deletion in a photoreceptor-specific nuclear receptor mRNA causes retinal degeneration in the rd7 mouse.
N B Akhmedov, N I Piriev, B Chang, A L Rapoport, N L Hawes, P M Nishina, S Nusinowitz, J R Heckenlively, T H Roderick, C A Kozak,[...]. Proc Natl Acad Sci U S A 2000
167
11

Chx10 is required to block photoreceptor differentiation but is dispensable for progenitor proliferation in the postnatal retina.
Izzy Livne-Bar, Marek Pacal, Melissa C Cheung, Mark Hankin, Judy Trogadis, Danian Chen, Kimberley M Dorval, Rod Bremner. Proc Natl Acad Sci U S A 2006
67
11

Pias3-dependent SUMOylation directs rod photoreceptor development.
Akishi Onishi, Guang-Hua Peng, Chengda Hsu, Uel Alexis, Shiming Chen, Seth Blackshaw. Neuron 2009
88
11


Evolution of eyes and photoreceptor cell types.
Detlev Arendt. Int J Dev Biol 2003
217
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.