B S Weir, C Clark Cockerham. Evolution 1984
Times Cited: 7826
Times Cited: 7826
Times Cited
Times Co-cited
Similarity
The variant call format and VCFtools.
Petr Danecek, Adam Auton, Goncalo Abecasis, Cornelis A Albers, Eric Banks, Mark A DePristo, Robert E Handsaker, Gerton Lunter, Gabor T Marth, Stephen T Sherry,[...]. Bioinformatics 2011
Petr Danecek, Adam Auton, Goncalo Abecasis, Cornelis A Albers, Eric Banks, Mark A DePristo, Robert E Handsaker, Gerton Lunter, Gabor T Marth, Stephen T Sherry,[...]. Bioinformatics 2011
36
PLINK: a tool set for whole-genome association and population-based linkage analyses.
Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel A R Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I W de Bakker, Mark J Daly,[...]. Am J Hum Genet 2007
Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel A R Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I W de Bakker, Mark J Daly,[...]. Am J Hum Genet 2007
28
Inference of population structure using multilocus genotype data.
J K Pritchard, M Stephens, P Donnelly. Genetics 2000
J K Pritchard, M Stephens, P Donnelly. Genetics 2000
26
The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
24
Fast and accurate short read alignment with Burrows-Wheeler transform.
Heng Li, Richard Durbin. Bioinformatics 2009
Heng Li, Richard Durbin. Bioinformatics 2009
22
Fast model-based estimation of ancestry in unrelated individuals.
David H Alexander, John Novembre, Kenneth Lange. Genome Res 2009
David H Alexander, John Novembre, Kenneth Lange. Genome Res 2009
19
adegenet: a R package for the multivariate analysis of genetic markers.
Thibaut Jombart. Bioinformatics 2008
Thibaut Jombart. Bioinformatics 2008
18
Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study.
G Evanno, S Regnaut, J Goudet. Mol Ecol 2005
G Evanno, S Regnaut, J Goudet. Mol Ecol 2005
18
genepop'007: a complete re-implementation of the genepop software for Windows and Linux.
François Rousset. Mol Ecol Resour 2008
François Rousset. Mol Ecol Resour 2008
16
Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows.
Laurent Excoffier, Heidi E L Lischer. Mol Ecol Resour 2010
Laurent Excoffier, Heidi E L Lischer. Mol Ecol Resour 2010
14
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
Aaron McKenna, Matthew Hanna, Eric Banks, Andrey Sivachenko, Kristian Cibulskis, Andrew Kernytsky, Kiran Garimella, David Altshuler, Stacey Gabriel, Mark Daly,[...]. Genome Res 2010
Aaron McKenna, Matthew Hanna, Eric Banks, Andrey Sivachenko, Kristian Cibulskis, Andrew Kernytsky, Kiran Garimella, David Altshuler, Stacey Gabriel, Mark Daly,[...]. Genome Res 2010
14
Second-generation PLINK: rising to the challenge of larger and richer datasets.
Christopher C Chang, Carson C Chow, Laurent Cam Tellier, Shashaank Vattikuti, Shaun M Purcell, James J Lee. Gigascience 2015
Christopher C Chang, Carson C Chow, Laurent Cam Tellier, Shashaank Vattikuti, Shaun M Purcell, James J Lee. Gigascience 2015
13
Discriminant analysis of principal components: a new method for the analysis of genetically structured populations.
Thibaut Jombart, Sébastien Devillard, François Balloux. BMC Genet 2010
Thibaut Jombart, Sébastien Devillard, François Balloux. BMC Genet 2010
13
Stacks: an analysis tool set for population genomics.
Julian Catchen, Paul A Hohenlohe, Susan Bassham, Angel Amores, William A Cresko. Mol Ecol 2013
Julian Catchen, Paul A Hohenlohe, Susan Bassham, Angel Amores, William A Cresko. Mol Ecol 2013
11
PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format files.
Chi Zhang, Shan-Shan Dong, Jun-Yang Xu, Wei-Ming He, Tie-Lin Yang. Bioinformatics 2019
Chi Zhang, Shan-Shan Dong, Jun-Yang Xu, Wei-Ming He, Tie-Lin Yang. Bioinformatics 2019
10
Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
9
GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update.
Rod Peakall, Peter E Smouse. Bioinformatics 2012
Rod Peakall, Peter E Smouse. Bioinformatics 2012
9
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.
Pablo Cingolani, Adrian Platts, Le Lily Wang, Melissa Coon, Tung Nguyen, Luan Wang, Susan J Land, Xiangyi Lu, Douglas M Ruden. Fly (Austin) 2012
Pablo Cingolani, Adrian Platts, Le Lily Wang, Melissa Coon, Tung Nguyen, Luan Wang, Susan J Land, Xiangyi Lu, Douglas M Ruden. Fly (Austin) 2012
9
8
A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective.
Matthieu Foll, Oscar Gaggiotti. Genetics 2008
Matthieu Foll, Oscar Gaggiotti. Genetics 2008
8
Median-joining networks for inferring intraspecific phylogenies.
H J Bandelt, P Forster, A Röhl. Mol Biol Evol 1999
H J Bandelt, P Forster, A Röhl. Mol Biol Evol 1999
8
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.
F Tajima. Genetics 1989
F Tajima. Genetics 1989
8
adegenet 1.3-1: new tools for the analysis of genome-wide SNP data.
Thibaut Jombart, Ismaïl Ahmed. Bioinformatics 2011
Thibaut Jombart, Ismaïl Ahmed. Bioinformatics 2011
8
Robust demographic inference from genomic and SNP data.
Laurent Excoffier, Isabelle Dupanloup, Emilia Huerta-Sánchez, Vitor C Sousa, Matthieu Foll. PLoS Genet 2013
Laurent Excoffier, Isabelle Dupanloup, Emilia Huerta-Sánchez, Vitor C Sousa, Matthieu Foll. PLoS Genet 2013
7
Fast and efficient estimation of individual ancestry coefficients.
Eric Frichot, François Mathieu, Théo Trouillon, Guillaume Bouchard, Olivier François. Genetics 2014
Eric Frichot, François Mathieu, Théo Trouillon, Guillaume Bouchard, Olivier François. Genetics 2014
7
Genome-wide detection and characterization of positive selection in human populations.
Pardis C Sabeti, Patrick Varilly, Ben Fry, Jason Lohmueller, Elizabeth Hostetter, Chris Cotsapas, Xiaohui Xie, Elizabeth H Byrne, Steven A McCarroll, Rachelle Gaudet,[...]. Nature 2007
Pardis C Sabeti, Patrick Varilly, Ben Fry, Jason Lohmueller, Elizabeth Hostetter, Chris Cotsapas, Xiaohui Xie, Elizabeth H Byrne, Steven A McCarroll, Rachelle Gaudet,[...]. Nature 2007
7
StAMPP: an R package for calculation of genetic differentiation and structure of mixed-ploidy level populations.
Luke W Pembleton, Noel O I Cogan, John W Forster. Mol Ecol Resour 2013
Luke W Pembleton, Noel O I Cogan, John W Forster. Mol Ecol Resour 2013
7
Estimation of average heterozygosity and genetic distance from a small number of individuals.
M Nei. Genetics 1978
M Nei. Genetics 1978
7
GCTA: a tool for genome-wide complex trait analysis.
Jian Yang, S Hong Lee, Michael E Goddard, Peter M Visscher. Am J Hum Genet 2011
Jian Yang, S Hong Lee, Michael E Goddard, Peter M Visscher. Am J Hum Genet 2011
7
A high-performance computing toolset for relatedness and principal component analysis of SNP data.
Xiuwen Zheng, David Levine, Jess Shen, Stephanie M Gogarten, Cathy Laurie, Bruce S Weir. Bioinformatics 2012
Xiuwen Zheng, David Levine, Jess Shen, Stephanie M Gogarten, Cathy Laurie, Bruce S Weir. Bioinformatics 2012
6
Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species.
Brant K Peterson, Jesse N Weber, Emily H Kay, Heidi S Fisher, Hopi E Hoekstra. PLoS One 2012
Brant K Peterson, Jesse N Weber, Emily H Kay, Heidi S Fisher, Hopi E Hoekstra. PLoS One 2012
6
Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data.
L Excoffier, P E Smouse, J M Quattro. Genetics 1992
L Excoffier, P E Smouse, J M Quattro. Genetics 1992
6
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.
Sudhir Kumar, Glen Stecher, Koichiro Tamura. Mol Biol Evol 2016
Sudhir Kumar, Glen Stecher, Koichiro Tamura. Mol Biol Evol 2016
6
A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
6
Clumpak: a program for identifying clustering modes and packaging population structure inferences across K.
Naama M Kopelman, Jonathan Mayzel, Mattias Jakobsson, Noah A Rosenberg, Itay Mayrose. Mol Ecol Resour 2015
Naama M Kopelman, Jonathan Mayzel, Mattias Jakobsson, Noah A Rosenberg, Itay Mayrose. Mol Ecol Resour 2015
6
Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction.
Zhian N Kamvar, Javier F Tabima, Niklaus J Grünwald. PeerJ 2014
Zhian N Kamvar, Javier F Tabima, Niklaus J Grünwald. PeerJ 2014
6
6
NeEstimator v2: re-implementation of software for the estimation of contemporary effective population size (Ne ) from genetic data.
C Do, R S Waples, D Peel, G M Macbeth, B J Tillett, J R Ovenden. Mol Ecol Resour 2014
C Do, R S Waples, D Peel, G M Macbeth, B J Tillett, J R Ovenden. Mol Ecol Resour 2014
6
A linear complexity phasing method for thousands of genomes.
Olivier Delaneau, Jonathan Marchini, Jean-François Zagury. Nat Methods 2011
Olivier Delaneau, Jonathan Marchini, Jean-François Zagury. Nat Methods 2011
5
Ancient admixture in human history.
Nick Patterson, Priya Moorjani, Yontao Luo, Swapan Mallick, Nadin Rohland, Yiping Zhan, Teri Genschoreck, Teresa Webster, David Reich. Genetics 2012
Nick Patterson, Priya Moorjani, Yontao Luo, Swapan Mallick, Nadin Rohland, Yiping Zhan, Teri Genschoreck, Teresa Webster, David Reich. Genetics 2012
5
Refugia, differentiation and postglacial migration in arctic-alpine Eurasia, exemplified by the mountain avens (Dryas octopetala L.).
Inger Skrede, Pernille Bronken Eidesen, Rosalía Piñeiro Portela, Christian Brochmann. Mol Ecol 2006
Inger Skrede, Pernille Bronken Eidesen, Rosalía Piñeiro Portela, Christian Brochmann. Mol Ecol 2006
5
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7.
Andrew Rambaut, Alexei J Drummond, Dong Xie, Guy Baele, Marc A Suchard. Syst Biol 2018
Andrew Rambaut, Alexei J Drummond, Dong Xie, Guy Baele, Marc A Suchard. Syst Biol 2018
5
Fast and accurate long-read alignment with Burrows-Wheeler transform.
Heng Li, Richard Durbin. Bioinformatics 2010
Heng Li, Richard Durbin. Bioinformatics 2010
5
Stacks 2: Analytical methods for paired-end sequencing improve RADseq-based population genomics.
Nicolas C Rochette, Angel G Rivera-Colón, Julian M Catchen. Mol Ecol 2019
Nicolas C Rochette, Angel G Rivera-Colón, Julian M Catchen. Mol Ecol 2019
5
Robust and scalable inference of population history from hundreds of unphased whole genomes.
Jonathan Terhorst, John A Kamm, Yun S Song. Nat Genet 2017
Jonathan Terhorst, John A Kamm, Yun S Song. Nat Genet 2017
5
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.
Sudhir Kumar, Glen Stecher, Michael Li, Christina Knyaz, Koichiro Tamura. Mol Biol Evol 2018
Sudhir Kumar, Glen Stecher, Michael Li, Christina Knyaz, Koichiro Tamura. Mol Biol Evol 2018
5
DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets.
Julio Rozas, Albert Ferrer-Mata, Juan Carlos Sánchez-DelBarrio, Sara Guirao-Rico, Pablo Librado, Sebastián E Ramos-Onsins, Alejandro Sánchez-Gracia. Mol Biol Evol 2017
Julio Rozas, Albert Ferrer-Mata, Juan Carlos Sánchez-DelBarrio, Sara Guirao-Rico, Pablo Librado, Sebastián E Ramos-Onsins, Alejandro Sánchez-Gracia. Mol Biol Evol 2017
5
SNeP: a tool to estimate trends in recent effective population size trajectories using genome-wide SNP data.
Mario Barbato, Pablo Orozco-terWengel, Miika Tapio, Michael W Bruford. Front Genet 2015
Mario Barbato, Pablo Orozco-terWengel, Miika Tapio, Michael W Bruford. Front Genet 2015
5
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.