A citation-based method for searching scientific literature

B S Weir, C Clark Cockerham. Evolution 1984
Times Cited: 7826







List of co-cited articles
376 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The variant call format and VCFtools.
Petr Danecek, Adam Auton, Goncalo Abecasis, Cornelis A Albers, Eric Banks, Mark A DePristo, Robert E Handsaker, Gerton Lunter, Gabor T Marth, Stephen T Sherry,[...]. Bioinformatics 2011
36

PLINK: a tool set for whole-genome association and population-based linkage analyses.
Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel A R Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I W de Bakker, Mark J Daly,[...]. Am J Hum Genet 2007
28

Inference of population structure using multilocus genotype data.
J K Pritchard, M Stephens, P Donnelly. Genetics 2000
26

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
24


Fast model-based estimation of ancestry in unrelated individuals.
David H Alexander, John Novembre, Kenneth Lange. Genome Res 2009
19





The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
Aaron McKenna, Matthew Hanna, Eric Banks, Andrey Sivachenko, Kristian Cibulskis, Andrew Kernytsky, Kiran Garimella, David Altshuler, Stacey Gabriel, Mark Daly,[...]. Genome Res 2010
14

Second-generation PLINK: rising to the challenge of larger and richer datasets.
Christopher C Chang, Carson C Chow, Laurent Cam Tellier, Shashaank Vattikuti, Shaun M Purcell, James J Lee. Gigascience 2015
13


Stacks: an analysis tool set for population genomics.
Julian Catchen, Paul A Hohenlohe, Susan Bassham, Angel Amores, William A Cresko. Mol Ecol 2013
11

PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format files.
Chi Zhang, Shan-Shan Dong, Jun-Yang Xu, Wei-Ming He, Tie-Lin Yang. Bioinformatics 2019
262
10

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
9


A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.
Pablo Cingolani, Adrian Platts, Le Lily Wang, Melissa Coon, Tung Nguyen, Luan Wang, Susan J Land, Xiangyi Lu, Douglas M Ruden. Fly (Austin) 2012
9

Population structure and eigenanalysis.
Nick Patterson, Alkes L Price, David Reich. PLoS Genet 2006
8


Median-joining networks for inferring intraspecific phylogenies.
H J Bandelt, P Forster, A Röhl. Mol Biol Evol 1999
8


adegenet 1.3-1: new tools for the analysis of genome-wide SNP data.
Thibaut Jombart, Ismaïl Ahmed. Bioinformatics 2011
8

Robust demographic inference from genomic and SNP data.
Laurent Excoffier, Isabelle Dupanloup, Emilia Huerta-Sánchez, Vitor C Sousa, Matthieu Foll. PLoS Genet 2013
639
7

Fast and efficient estimation of individual ancestry coefficients.
Eric Frichot, François Mathieu, Théo Trouillon, Guillaume Bouchard, Olivier François. Genetics 2014
288
7

Genome-wide detection and characterization of positive selection in human populations.
Pardis C Sabeti, Patrick Varilly, Ben Fry, Jason Lohmueller, Elizabeth Hostetter, Chris Cotsapas, Xiaohui Xie, Elizabeth H Byrne, Steven A McCarroll, Rachelle Gaudet,[...]. Nature 2007
7



GCTA: a tool for genome-wide complex trait analysis.
Jian Yang, S Hong Lee, Michael E Goddard, Peter M Visscher. Am J Hum Genet 2011
7

A high-performance computing toolset for relatedness and principal component analysis of SNP data.
Xiuwen Zheng, David Levine, Jess Shen, Stephanie M Gogarten, Cathy Laurie, Bruce S Weir. Bioinformatics 2012
915
6

Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species.
Brant K Peterson, Jesse N Weber, Emily H Kay, Heidi S Fisher, Hopi E Hoekstra. PLoS One 2012
6


MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.
Sudhir Kumar, Glen Stecher, Koichiro Tamura. Mol Biol Evol 2016
6

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
6

Clumpak: a program for identifying clustering modes and packaging population structure inferences across K.
Naama M Kopelman, Jonathan Mayzel, Mattias Jakobsson, Noah A Rosenberg, Itay Mayrose. Mol Ecol Resour 2015
902
6

Linkage disequilibrium in finite populations.
W G Hill, A Robertson. Theor Appl Genet 1968
6


Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
6


A linear complexity phasing method for thousands of genomes.
Olivier Delaneau, Jonathan Marchini, Jean-François Zagury. Nat Methods 2011
5

Ancient admixture in human history.
Nick Patterson, Priya Moorjani, Yontao Luo, Swapan Mallick, Nadin Rohland, Yiping Zhan, Teri Genschoreck, Teresa Webster, David Reich. Genetics 2012
998
5


Refugia, differentiation and postglacial migration in arctic-alpine Eurasia, exemplified by the mountain avens (Dryas octopetala L.).
Inger Skrede, Pernille Bronken Eidesen, Rosalía Piñeiro Portela, Christian Brochmann. Mol Ecol 2006
442
5

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7.
Andrew Rambaut, Alexei J Drummond, Dong Xie, Guy Baele, Marc A Suchard. Syst Biol 2018
5


Stacks 2: Analytical methods for paired-end sequencing improve RADseq-based population genomics.
Nicolas C Rochette, Angel G Rivera-Colón, Julian M Catchen. Mol Ecol 2019
176
5


MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.
Sudhir Kumar, Glen Stecher, Michael Li, Christina Knyaz, Koichiro Tamura. Mol Biol Evol 2018
5

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets.
Julio Rozas, Albert Ferrer-Mata, Juan Carlos Sánchez-DelBarrio, Sara Guirao-Rico, Pablo Librado, Sebastián E Ramos-Onsins, Alejandro Sánchez-Gracia. Mol Biol Evol 2017
5

SNeP: a tool to estimate trends in recent effective population size trajectories using genome-wide SNP data.
Mario Barbato, Pablo Orozco-terWengel, Miika Tapio, Michael W Bruford. Front Genet 2015
168
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.