A citation-based method for searching scientific literature

Megan Y Dennis, Lana Harshman, Bradley J Nelson, Osnat Penn, Stuart Cantsilieris, John Huddleston, Francesca Antonacci, Kelsi Penewit, Laura Denman, Archana Raja, Carl Baker, Kenneth Mark, Maika Malig, Nicolette Janke, Claudia Espinoza, Holly A F Stessman, Xander Nuttle, Kendra Hoekzema, Tina A Lindsay-Graves, Richard K Wilson, Evan E Eichler. Nat Ecol Evol 2017
Times Cited: 58







List of co-cited articles
700 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Evolution of human-specific neural SRGAP2 genes by incomplete segmental duplication.
Megan Y Dennis, Xander Nuttle, Peter H Sudmant, Francesca Antonacci, Tina A Graves, Mikhail Nefedov, Jill A Rosenfeld, Saba Sajjadian, Maika Malig, Holland Kotkiewicz,[...]. Cell 2012
193
37

Human-specific gene ARHGAP11B promotes basal progenitor amplification and neocortex expansion.
Marta Florio, Mareike Albert, Elena Taverna, Takashi Namba, Holger Brandl, Eric Lewitus, Christiane Haffner, Alex Sykes, Fong Kuan Wong, Jula Peters,[...]. Science 2015
270
37

Human adaptation and evolution by segmental duplication.
Megan Y Dennis, Evan E Eichler. Curr Opin Genet Dev 2016
65
34

Inhibition of SRGAP2 function by its human-specific paralogs induces neoteny during spine maturation.
Cécile Charrier, Kaumudi Joshi, Jaeda Coutinho-Budd, Ji-Eun Kim, Nelle Lambert, Jacqueline de Marchena, Wei-Lin Jin, Pierre Vanderhaeghen, Anirvan Ghosh, Takayuki Sassa,[...]. Cell 2012
212
32

Diversity of human copy number variation and multicopy genes.
Peter H Sudmant, Jacob O Kitzman, Francesca Antonacci, Can Alkan, Maika Malig, Anya Tsalenko, Nick Sampas, Laurakay Bruhn, Jay Shendure, Evan E Eichler. Science 2010
433
27

Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis.
Ian T Fiddes, Gerrald A Lodewijk, Meghan Mooring, Colleen M Bosworth, Adam D Ewing, Gary L Mantalas, Adam M Novak, Anouk van den Bout, Alex Bishara, Jimi L Rosenkrantz,[...]. Cell 2018
161
24

Evolution and diversity of copy number variation in the great ape lineage.
Peter H Sudmant, John Huddleston, Claudia R Catacchio, Maika Malig, Ladeana W Hillier, Carl Baker, Kiana Mohajeri, Ivanela Kondova, Ronald E Bontrop, Stephan Persengiev,[...]. Genome Res 2013
84
20

Development and evolution of the human neocortex.
Jan H Lui, David V Hansen, Arnold R Kriegstein. Cell 2011
685
20

High-resolution comparative analysis of great ape genomes.
Zev N Kronenberg, Ian T Fiddes, David Gordon, Shwetha Murali, Stuart Cantsilieris, Olivia S Meyerson, Jason G Underwood, Bradley J Nelson, Mark J P Chaisson, Max L Dougherty,[...]. Science 2018
133
20

Recent segmental duplications in the human genome.
Jeffrey A Bailey, Zhiping Gu, Royden A Clark, Knut Reinert, Rhea V Samonte, Stuart Schwartz, Mark D Adams, Eugene W Myers, Peter W Li, Evan E Eichler. Science 2002
931
18

Evolution and cell-type specificity of human-specific genes preferentially expressed in progenitors of fetal neocortex.
Marta Florio, Michael Heide, Anneline Pinson, Holger Brandl, Mareike Albert, Sylke Winkler, Pauline Wimberger, Wieland B Huttner, Michael Hiller. Elife 2018
61
18

Human-specific loss of regulatory DNA and the evolution of human-specific traits.
Cory Y McLean, Philip L Reno, Alex A Pollen, Abraham I Bassan, Terence D Capellini, Catherine Guenther, Vahan B Indjeian, Xinhong Lim, Douglas B Menke, Bruce T Schaar,[...]. Nature 2011
252
17

Evolution of the Human Nervous System Function, Structure, and Development.
André M M Sousa, Kyle A Meyer, Gabriel Santpere, Forrest O Gulden, Nenad Sestan. Cell 2017
129
17

Global diversity, population stratification, and selection of human copy-number variation.
Peter H Sudmant, Swapan Mallick, Bradley J Nelson, Fereydoun Hormozdiari, Niklas Krumm, John Huddleston, Bradley P Coe, Carl Baker, Susanne Nordenfelt, Michael Bamshad,[...]. Science 2015
175
15

An integrated map of structural variation in 2,504 human genomes.
Peter H Sudmant, Tobias Rausch, Eugene J Gardner, Robert E Handsaker, Alexej Abyzov, John Huddleston, Yan Zhang, Kai Ye, Goo Jun, Markus Hsi-Yang Fritz,[...]. Nature 2015
947
15

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
15

A single splice site mutation in human-specific ARHGAP11B causes basal progenitor amplification.
Marta Florio, Takashi Namba, Svante Pääbo, Michael Hiller, Wieland B Huttner. Sci Adv 2016
35
25


Human-chimpanzee differences in a FZD8 enhancer alter cell-cycle dynamics in the developing neocortex.
J Lomax Boyd, Stephanie L Skove, Jeremy P Rouanet, Louis-Jan Pilaz, Tristan Bepler, Raluca Gordân, Gregory A Wray, Debra L Silver. Curr Biol 2015
101
15


The birth of a human-specific neural gene by incomplete duplication and gene fusion.
Max L Dougherty, Xander Nuttle, Osnat Penn, Bradley J Nelson, John Huddleston, Carl Baker, Lana Harshman, Michael H Duyzend, Mario Ventura, Francesca Antonacci,[...]. Genome Biol 2017
20
45

Emergence of a Homo sapiens-specific gene family and chromosome 16p11.2 CNV susceptibility.
Xander Nuttle, Giuliana Giannuzzi, Michael H Duyzend, Joshua G Schraiber, Iñigo Narvaiza, Peter H Sudmant, Osnat Penn, Giorgia Chiatante, Maika Malig, John Huddleston,[...]. Nature 2016
58
15

The hominoid-specific gene TBC1D3 promotes generation of basal neural progenitors and induces cortical folding in mice.
Xiang-Chun Ju, Qiong-Qiong Hou, Ai-Li Sheng, Kong-Yan Wu, Yang Zhou, Ying Jin, Tieqiao Wen, Zhengang Yang, Xiaoqun Wang, Zhen-Ge Luo. Elife 2016
55
16

Human-Specific NOTCH2NL Genes Expand Cortical Neurogenesis through Delta/Notch Regulation.
Ikuo K Suzuki, David Gacquer, Roxane Van Heurck, Devesh Kumar, Marta Wojno, Angéline Bilheu, Adèle Herpoel, Nelle Lambert, Julian Cheron, Franck Polleux,[...]. Cell 2018
124
15


Mutations in Human Accelerated Regions Disrupt Cognition and Social Behavior.
Ryan N Doan, Byoung-Il Bae, Beatriz Cubelos, Cindy Chang, Amer A Hossain, Samira Al-Saad, Nahit M Mukaddes, Ozgur Oner, Muna Al-Saffar, Soher Balkhy,[...]. Cell 2016
103
13

An RNA gene expressed during cortical development evolved rapidly in humans.
Katherine S Pollard, Sofie R Salama, Nelle Lambert, Marie-Alexandra Lambot, Sandra Coppens, Jakob S Pedersen, Sol Katzman, Bryan King, Courtney Onodera, Adam Siepel,[...]. Nature 2006
551
13

Palindromic GOLGA8 core duplicons promote chromosome 15q13.3 microdeletion and evolutionary instability.
Francesca Antonacci, Megan Y Dennis, John Huddleston, Peter H Sudmant, Karyn Meltz Steinberg, Jill A Rosenfeld, Mattia Miroballo, Tina A Graves, Laura Vives, Maika Malig,[...]. Nat Genet 2014
60
12

Ancestral reconstruction of segmental duplications reveals punctuated cores of human genome evolution.
Zhaoshi Jiang, Haixu Tang, Mario Ventura, Maria Francesca Cardone, Tomas Marques-Bonet, Xinwei She, Pavel A Pevzner, Evan E Eichler. Nat Genet 2007
130
12

Lineage-specific gene duplication and loss in human and great ape evolution.
Andrew Fortna, Young Kim, Erik MacLaren, Kriste Marshall, Gretchen Hahn, Lynne Meltesen, Matthew Brenton, Raquel Hink, Sonya Burgers, Tina Hernandez-Boussard,[...]. PLoS Biol 2004
192
12

A burst of segmental duplications in the genome of the African great ape ancestor.
Tomas Marques-Bonet, Jeffrey M Kidd, Mario Ventura, Tina A Graves, Ze Cheng, LaDeana W Hillier, Zhaoshi Jiang, Carl Baker, Ray Malfavon-Borja, Lucinda A Fulton,[...]. Nature 2009
145
12

Molecular identity of human outer radial glia during cortical development.
Alex A Pollen, Tomasz J Nowakowski, Jiadong Chen, Hanna Retallack, Carmen Sandoval-Espinosa, Cory R Nicholas, Joe Shuga, Siyuan John Liu, Michael C Oldham, Aaron Diaz,[...]. Cell 2015
355
12

Precursor diversity and complexity of lineage relationships in the outer subventricular zone of the primate.
Marion Betizeau, Veronique Cortay, Dorothée Patti, Sabina Pfister, Elodie Gautier, Angèle Bellemin-Ménard, Marielle Afanassieff, Cyril Huissoud, Rodney J Douglas, Henry Kennedy,[...]. Neuron 2013
241
12

The outer subventricular zone and primate-specific cortical complexification.
Colette Dehay, Henry Kennedy, Kenneth S Kosik. Neuron 2015
147
12

OSVZ progenitors of human and ferret neocortex are epithelial-like and expand by integrin signaling.
Simone A Fietz, Iva Kelava, Johannes Vogt, Michaela Wilsch-Bräuninger, Denise Stenzel, Jennifer L Fish, Denis Corbeil, Axel Riehn, Wolfgang Distler, Robert Nitsch,[...]. Nat Neurosci 2010
461
12

Neurogenic radial glia in the outer subventricular zone of human neocortex.
David V Hansen, Jan H Lui, Philip R L Parker, Arnold R Kriegstein. Nature 2010
720
12

Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex.
Tomasz J Nowakowski, Aparna Bhaduri, Alex A Pollen, Beatriz Alvarado, Mohammed A Mostajo-Radji, Elizabeth Di Lullo, Maximilian Haeussler, Carmen Sandoval-Espinosa, Siyuan John Liu, Dmitry Velmeshev,[...]. Science 2017
274
12

Near-optimal probabilistic RNA-seq quantification.
Nicolas L Bray, Harold Pimentel, Páll Melsted, Lior Pachter. Nat Biotechnol 2016
10

Great ape genetic diversity and population history.
Javier Prado-Martinez, Peter H Sudmant, Jeffrey M Kidd, Heng Li, Joanna L Kelley, Belen Lorente-Galdos, Krishna R Veeramah, August E Woerner, Timothy D O'Connor, Gabriel Santpere,[...]. Nature 2013
423
10


A single nucleotide in the SMN gene regulates splicing and is responsible for spinal muscular atrophy.
C L Lorson, E Hahnen, E J Androphy, B Wirth. Proc Natl Acad Sci U S A 1999
10

Insights into hominid evolution from the gorilla genome sequence.
Aylwyn Scally, Julien Y Dutheil, LaDeana W Hillier, Gregory E Jordan, Ian Goodhead, Javier Herrero, Asger Hobolth, Tuuli Lappalainen, Thomas Mailund, Tomas Marques-Bonet,[...]. Nature 2012
388
10

Transcriptional landscape of the prenatal human brain.
Jeremy A Miller, Song-Lin Ding, Susan M Sunkin, Kimberly A Smith, Lydia Ng, Aaron Szafer, Amanda Ebbert, Zackery L Riley, Joshua J Royall, Kaylynn Aiona,[...]. Nature 2014
604
10

Many human accelerated regions are developmental enhancers.
John A Capra, Genevieve D Erwin, Gabriel McKinsey, John L R Rubenstein, Katherine S Pollard. Philos Trans R Soc Lond B Biol Sci 2013
87
10

Neural progenitors, neurogenesis and the evolution of the neocortex.
Marta Florio, Wieland B Huttner. Development 2014
316
10

Cortical evolution: judge the brain by its cover.
Daniel H Geschwind, Pasko Rakic. Neuron 2013
278
10


A genome-wide survey of structural variation between human and chimpanzee.
Tera L Newman, Eray Tuzun, V Anne Morrison, Karen E Hayden, Mario Ventura, Sean D McGrath, Mariano Rocchi, Evan E Eichler. Genome Res 2005
130
10

Evolutionary genomics. Evolutionary changes in promoter and enhancer activity during human corticogenesis.
Steven K Reilly, Jun Yin, Albert E Ayoub, Deena Emera, Jing Leng, Justin Cotney, Richard Sarro, Pasko Rakic, James P Noonan. Science 2015
116
10

A role for intermediate radial glia in the tangential expansion of the mammalian cerebral cortex.
Isabel Reillo, Camino de Juan Romero, Miguel Ángel García-Cabezas, Víctor Borrell. Cereb Cortex 2011
345
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.